Wall clock time and date at job start Mon Mar 30 2020 00:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47164 * 2 1 4 4 C 1.36935 * 119.99673 * 85.12118 * 3 2 1 5 5 H 1.07994 * 120.00214 * 209.88747 * 4 3 2 6 6 C 1.38810 * 119.99957 * 29.89443 * 4 3 2 7 7 N 1.31621 * 120.00378 * 40.62604 * 6 4 3 8 8 Si 1.86805 * 119.99728 * 220.35109 * 6 4 3 9 9 H 1.48507 * 109.46977 * 270.27492 * 8 6 4 10 10 H 1.48499 * 109.47158 * 30.27285 * 8 6 4 11 11 H 1.48499 * 109.47370 * 150.27585 * 8 6 4 12 12 C 1.46499 * 120.00255 * 265.11781 * 3 2 1 13 13 C 1.52996 * 109.47720 * 270.00151 * 12 3 2 14 14 N 1.46499 * 109.47338 * 179.97438 * 13 12 3 15 15 C 1.34775 * 119.99797 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00300 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00178 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.63683 * 300.42381 * 17 15 14 19 19 C 1.53027 * 109.63928 * 61.05318 * 17 15 14 20 20 C 1.50061 * 110.14589 * 169.12340 * 19 17 15 21 21 C 1.29442 * 124.07488 * 342.87063 * 20 19 17 22 22 C 1.50063 * 124.07897 * 0.46973 * 21 20 19 23 23 C 1.53024 * 110.14624 * 342.86917 * 22 21 20 24 24 H 1.08997 * 109.47147 * 59.99730 * 1 2 3 25 25 H 1.09002 * 109.46712 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46712 * 299.99471 * 1 2 3 27 27 H 1.09009 * 109.47036 * 239.99973 * 2 1 3 28 28 H 1.09005 * 109.47461 * 120.00809 * 2 1 3 29 29 H 0.96995 * 119.99647 * 5.57066 * 7 6 4 30 30 H 1.09008 * 109.47060 * 30.00555 * 12 3 2 31 31 H 1.09002 * 109.47063 * 149.99827 * 12 3 2 32 32 H 1.09002 * 109.46788 * 300.00226 * 13 12 3 33 33 H 1.09002 * 109.47117 * 59.99710 * 13 12 3 34 34 H 0.96994 * 119.99808 * 359.97438 * 14 13 12 35 35 H 1.09000 * 109.36141 * 289.33082 * 19 17 15 36 36 H 1.09008 * 109.35243 * 48.91680 * 19 17 15 37 37 H 1.08000 * 117.96597 * 162.85000 * 20 19 17 38 38 H 1.08007 * 117.96148 * 180.49325 * 21 20 19 39 39 H 1.09008 * 109.36399 * 222.66108 * 22 21 20 40 40 H 1.08996 * 109.24828 * 103.00825 * 22 21 20 41 41 H 1.09004 * 109.64280 * 289.74864 * 23 22 21 42 42 H 1.09002 * 109.64153 * 169.11667 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1514 2.0603 1.1816 5 1 2.0327 3.1334 1.2041 6 6 2.4391 1.3693 2.3506 7 7 3.3079 0.3807 2.3340 8 14 1.5988 1.8474 3.9490 9 1 2.4099 2.8781 4.6456 10 1 0.2500 2.3946 3.6548 11 1 1.4685 0.6498 4.8174 12 6 2.3643 2.0359 -1.2641 13 6 3.8398 1.7847 -1.5815 14 7 4.1855 2.4389 -2.8459 15 6 5.4412 2.3527 -3.3279 16 8 6.2848 1.7332 -2.7151 17 6 5.7968 3.0252 -4.6288 18 1 5.1752 2.6250 -5.4299 19 6 5.5755 4.5343 -4.5051 20 6 6.1693 5.2424 -5.6874 21 6 7.0370 4.7132 -6.4890 22 6 7.5629 3.3143 -6.3540 23 6 7.2758 2.7764 -4.9505 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 3.8068 0.1871 1.5251 30 1 1.7461 1.6296 -2.0648 31 1 2.1886 3.1082 -1.1779 32 1 4.4579 2.1910 -0.7809 33 1 4.0155 0.7124 -1.6677 34 1 3.5107 2.9340 -3.3361 35 1 4.5061 4.7402 -4.4603 36 1 6.0495 4.8952 -3.5922 37 1 5.8527 6.2565 -5.8818 38 1 7.4057 5.3162 -7.3057 39 1 8.6390 3.3144 -6.5278 40 1 7.0780 2.6753 -7.0920 41 1 7.9011 3.2955 -4.2241 42 1 7.4828 1.7067 -4.9186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480961716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:00 Heat of formation + Delta-G solvation = -22.169151 kcal Electronic energy + Delta-G solvation = -20325.481611 eV Core-core repulsion = 17305.535267 eV Total energy + Delta-G solvation = -3019.946344 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01601 -37.72224 -36.42889 -34.34930 -31.77295 -31.33473 -30.95515 -29.96154 -27.18354 -24.28736 -23.65546 -22.98972 -21.97891 -20.31733 -19.80263 -18.08887 -17.39840 -16.96867 -15.95489 -15.43684 -14.99503 -14.42505 -14.26965 -14.06673 -13.78795 -13.59716 -13.35854 -13.24048 -12.86221 -12.62754 -12.37158 -12.22209 -12.18377 -11.31878 -11.11978 -11.00122 -10.88903 -10.80373 -10.65281 -10.51671 -10.43765 -10.04478 -9.97824 -9.56792 -9.45148 -9.21299 -8.63464 -8.24837 -6.94015 -6.18324 -3.24350 2.07146 2.89559 3.46316 3.49832 3.56019 3.71077 4.47656 4.50611 4.60803 4.74328 5.04223 5.08152 5.11782 5.16883 5.28303 5.35810 5.44859 5.48550 5.68148 5.75123 5.76519 5.82395 5.94403 6.06150 6.09878 6.18932 6.21225 6.40994 6.43324 6.48676 6.63455 6.68032 6.71898 6.72990 6.93985 7.09429 7.30415 7.81863 8.08752 8.52063 8.53902 9.06815 9.80545 10.25554 11.04840 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031340 B = 0.003684 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.209702 B = 7598.934389 C = 7748.364582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 N -0.585 5.585 4 C -0.375 4.375 5 H 0.054 0.946 6 C -0.007 4.007 7 N -0.879 5.879 8 Si 1.046 2.954 9 H -0.294 1.294 10 H -0.291 1.291 11 H -0.286 1.286 12 C 0.140 3.860 13 C 0.095 3.905 14 N -0.725 5.725 15 C 0.509 3.491 16 O -0.542 6.542 17 C -0.107 4.107 18 H 0.096 0.904 19 C -0.082 4.082 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.092 4.092 23 C -0.100 4.100 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.271 0.729 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.394 0.606 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.564 6.589 -17.328 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 N -0.307 5.307 4 C -0.503 4.503 5 H 0.072 0.928 6 C -0.213 4.213 7 N -0.515 5.515 8 Si 0.875 3.125 9 H -0.221 1.221 10 H -0.217 1.217 11 H -0.211 1.211 12 C 0.013 3.987 13 C -0.030 4.030 14 N -0.376 5.376 15 C 0.295 3.705 16 O -0.419 6.419 17 C -0.129 4.129 18 H 0.114 0.886 19 C -0.120 4.120 20 C -0.171 4.171 21 C -0.175 4.175 22 C -0.129 4.129 23 C -0.138 4.138 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.986 5.715 -15.232 16.540 hybrid contribution -0.128 0.816 -1.882 2.056 sum 2.858 6.531 -17.114 18.539 Atomic orbital electron populations 1.22170 0.99556 0.98931 1.01068 1.20881 0.91881 0.86251 1.00151 1.43979 1.72988 1.12099 1.01632 1.19679 1.51353 0.93245 0.86066 0.92823 1.25697 0.96332 0.98264 1.00993 1.70768 1.17018 1.33753 1.29953 0.83879 0.76532 0.75921 0.76206 1.22112 1.21713 1.21140 1.21086 0.90578 0.97523 0.89530 1.22455 1.00122 0.96862 0.83571 1.46209 1.11084 1.54906 1.25363 1.20591 0.82465 0.80712 0.86773 1.90706 1.48507 1.42452 1.60196 1.21404 0.99302 0.96176 0.95972 0.88635 1.20418 1.01299 0.92484 0.97764 1.22002 0.98567 0.99843 0.96652 1.22089 0.98488 0.97224 0.99713 1.20506 1.01036 0.94008 0.97380 1.21421 0.94017 1.02166 0.96195 0.94510 0.94502 0.92593 0.95346 0.91151 0.91852 0.94268 0.93279 0.91386 0.92695 0.77270 0.90433 0.90185 0.87669 0.87987 0.90776 0.90850 0.91100 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.21 37.16 0.38 -2.77 16 2 C 0.13 3.07 5.90 -4.04 -0.02 3.04 16 3 N -0.59 -14.14 2.36 -173.24 -0.41 -14.55 16 4 C -0.38 -10.24 9.25 -15.06 -0.14 -10.37 16 5 H 0.05 1.50 8.06 -52.49 -0.42 1.08 16 6 C -0.01 -0.19 4.52 -17.43 -0.08 -0.26 16 7 N -0.88 -25.95 12.22 55.49 0.68 -25.27 16 8 Si 1.05 24.90 30.05 -169.99 -5.11 19.79 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.14 2.79 5.76 -4.04 -0.02 2.77 16 13 C 0.10 1.89 6.00 -4.04 -0.02 1.86 16 14 N -0.72 -11.11 5.47 -60.30 -0.33 -11.44 16 15 C 0.51 8.14 7.13 -10.99 -0.08 8.06 16 16 O -0.54 -11.21 15.91 5.56 0.09 -11.13 16 17 C -0.11 -1.23 2.58 -91.56 -0.24 -1.47 16 18 H 0.10 0.95 8.13 -51.93 -0.42 0.52 16 19 C -0.08 -0.82 5.29 -28.18 -0.15 -0.97 16 20 C -0.15 -1.36 9.80 -35.90 -0.35 -1.71 16 21 C -0.16 -1.35 9.80 -35.90 -0.35 -1.70 16 22 C -0.09 -0.81 6.12 -28.18 -0.17 -0.98 16 23 C -0.10 -1.15 4.69 -26.52 -0.12 -1.27 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.03 0.60 8.04 -51.92 -0.42 0.18 16 28 H 0.07 1.83 5.70 -51.93 -0.30 1.53 16 29 H 0.27 8.19 8.10 -40.82 -0.33 7.86 16 30 H 0.04 0.69 8.07 -51.92 -0.42 0.27 16 31 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.39 4.69 8.22 -40.82 -0.34 4.35 16 35 H 0.08 0.66 7.95 -51.93 -0.41 0.25 16 36 H 0.08 0.90 8.10 -51.92 -0.42 0.48 16 37 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.10 0.73 8.06 -52.48 -0.42 0.30 16 39 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 42 H 0.07 0.93 7.91 -51.93 -0.41 0.52 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -31.51 341.93 -8.63 -40.14 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.33 Total: 3.08 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.37 Total: -5.78 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.06 Total: -51.26 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.11 Total: 19.79 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.51 -8.63 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480961716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.975 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds