Wall clock time and date at job start Mon Mar 30 2020 00:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47164 * 2 1 4 4 C 1.36935 * 119.99673 * 85.12118 * 3 2 1 5 5 H 1.07994 * 120.00214 * 209.88747 * 4 3 2 6 6 C 1.38810 * 119.99957 * 29.89443 * 4 3 2 7 7 N 1.31621 * 120.00378 * 40.62604 * 6 4 3 8 8 Si 1.86805 * 119.99728 * 220.35109 * 6 4 3 9 9 H 1.48507 * 109.46977 * 270.27492 * 8 6 4 10 10 H 1.48499 * 109.47158 * 30.27285 * 8 6 4 11 11 H 1.48499 * 109.47370 * 150.27585 * 8 6 4 12 12 C 1.46499 * 120.00255 * 265.11781 * 3 2 1 13 13 C 1.52996 * 109.47720 * 270.00151 * 12 3 2 14 14 N 1.46499 * 109.47338 * 179.97438 * 13 12 3 15 15 C 1.34775 * 119.99797 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00300 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00178 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.63683 * 300.42381 * 17 15 14 19 19 C 1.53027 * 109.63928 * 61.05318 * 17 15 14 20 20 C 1.50061 * 110.14589 * 169.12340 * 19 17 15 21 21 C 1.29442 * 124.07488 * 342.87063 * 20 19 17 22 22 C 1.50063 * 124.07897 * 0.46973 * 21 20 19 23 23 C 1.53024 * 110.14624 * 342.86917 * 22 21 20 24 24 H 1.08997 * 109.47147 * 59.99730 * 1 2 3 25 25 H 1.09002 * 109.46712 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46712 * 299.99471 * 1 2 3 27 27 H 1.09009 * 109.47036 * 239.99973 * 2 1 3 28 28 H 1.09005 * 109.47461 * 120.00809 * 2 1 3 29 29 H 0.96995 * 119.99647 * 5.57066 * 7 6 4 30 30 H 1.09008 * 109.47060 * 30.00555 * 12 3 2 31 31 H 1.09002 * 109.47063 * 149.99827 * 12 3 2 32 32 H 1.09002 * 109.46788 * 300.00226 * 13 12 3 33 33 H 1.09002 * 109.47117 * 59.99710 * 13 12 3 34 34 H 0.96994 * 119.99808 * 359.97438 * 14 13 12 35 35 H 1.09000 * 109.36141 * 289.33082 * 19 17 15 36 36 H 1.09008 * 109.35243 * 48.91680 * 19 17 15 37 37 H 1.08000 * 117.96597 * 162.85000 * 20 19 17 38 38 H 1.08007 * 117.96148 * 180.49325 * 21 20 19 39 39 H 1.09008 * 109.36399 * 222.66108 * 22 21 20 40 40 H 1.08996 * 109.24828 * 103.00825 * 22 21 20 41 41 H 1.09004 * 109.64280 * 289.74864 * 23 22 21 42 42 H 1.09002 * 109.64153 * 169.11667 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1514 2.0603 1.1816 5 1 2.0327 3.1334 1.2041 6 6 2.4391 1.3693 2.3506 7 7 3.3079 0.3807 2.3340 8 14 1.5988 1.8474 3.9490 9 1 2.4099 2.8781 4.6456 10 1 0.2500 2.3946 3.6548 11 1 1.4685 0.6498 4.8174 12 6 2.3643 2.0359 -1.2641 13 6 3.8398 1.7847 -1.5815 14 7 4.1855 2.4389 -2.8459 15 6 5.4412 2.3527 -3.3279 16 8 6.2848 1.7332 -2.7151 17 6 5.7968 3.0252 -4.6288 18 1 5.1752 2.6250 -5.4299 19 6 5.5755 4.5343 -4.5051 20 6 6.1693 5.2424 -5.6874 21 6 7.0370 4.7132 -6.4890 22 6 7.5629 3.3143 -6.3540 23 6 7.2758 2.7764 -4.9505 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5140 0.8899 29 1 3.8068 0.1871 1.5251 30 1 1.7461 1.6296 -2.0648 31 1 2.1886 3.1082 -1.1779 32 1 4.4579 2.1910 -0.7809 33 1 4.0155 0.7124 -1.6677 34 1 3.5107 2.9340 -3.3361 35 1 4.5061 4.7402 -4.4603 36 1 6.0495 4.8952 -3.5922 37 1 5.8527 6.2565 -5.8818 38 1 7.4057 5.3162 -7.3057 39 1 8.6390 3.3144 -6.5278 40 1 7.0780 2.6753 -7.0920 41 1 7.9011 3.2955 -4.2241 42 1 7.4828 1.7067 -4.9186 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480961716.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:59 Heat of formation + Delta-G solvation = -41.472315 kcal Electronic energy + Delta-G solvation = -20326.318659 eV Core-core repulsion = 17305.535267 eV Total energy + Delta-G solvation = -3020.783392 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23934 -38.79609 -38.16963 -35.93736 -33.56581 -32.57993 -31.82243 -31.40982 -28.91219 -25.94508 -24.94105 -24.14253 -23.33364 -22.03543 -21.22321 -19.22746 -18.87777 -18.26361 -17.25245 -16.67513 -16.43089 -16.07521 -15.88956 -15.49874 -15.27636 -14.70508 -14.67643 -14.46803 -14.16686 -13.96709 -13.92229 -13.25093 -13.15240 -13.07658 -12.71713 -12.58471 -12.51526 -12.21902 -12.02643 -11.90428 -11.78340 -11.73520 -11.47446 -11.34514 -10.78465 -10.33580 -10.14751 -9.87601 -8.97162 -8.32458 -5.37682 1.42042 1.57618 1.58622 1.63374 1.83243 2.14245 2.66107 3.07102 3.49314 3.64215 3.72878 3.84219 4.12185 4.16716 4.25941 4.29487 4.36546 4.38663 4.44575 4.56094 4.59521 4.70958 4.76229 4.82198 4.89926 4.95076 5.01096 5.03819 5.03881 5.10766 5.24197 5.30904 5.33685 5.43674 5.55052 5.77405 5.95618 6.05904 6.31915 6.54794 7.04905 7.24709 7.77841 8.20787 8.85370 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031340 B = 0.003684 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.209702 B = 7598.934389 C = 7748.364582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 N -0.602 5.602 4 C -0.375 4.375 5 H 0.045 0.955 6 C -0.056 4.056 7 N -0.907 5.907 8 Si 1.094 2.906 9 H -0.286 1.286 10 H -0.274 1.274 11 H -0.289 1.289 12 C 0.144 3.856 13 C 0.117 3.883 14 N -0.709 5.709 15 C 0.505 3.495 16 O -0.595 6.595 17 C -0.095 4.095 18 H 0.123 0.877 19 C -0.081 4.081 20 C -0.161 4.161 21 C -0.157 4.157 22 C -0.088 4.088 23 C -0.103 4.103 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.035 0.965 27 H 0.043 0.957 28 H 0.034 0.966 29 H 0.252 0.748 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.032 0.968 34 H 0.416 0.584 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.123 0.877 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.030 7.964 -19.699 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 N -0.324 5.324 4 C -0.504 4.504 5 H 0.062 0.938 6 C -0.256 4.256 7 N -0.545 5.545 8 Si 0.919 3.081 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.215 1.215 12 C 0.017 3.983 13 C -0.010 4.010 14 N -0.362 5.362 15 C 0.293 3.707 16 O -0.476 6.476 17 C -0.116 4.116 18 H 0.141 0.859 19 C -0.118 4.118 20 C -0.179 4.179 21 C -0.175 4.175 22 C -0.125 4.125 23 C -0.141 4.141 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.253 0.747 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.416 7.128 -17.657 19.094 hybrid contribution 0.397 0.389 -1.233 1.353 sum 1.813 7.517 -18.890 20.411 Atomic orbital electron populations 1.22014 0.96858 1.00600 1.00980 1.20897 0.93939 0.85427 0.99148 1.44200 1.73490 1.12544 1.02143 1.19830 1.49923 0.93091 0.87580 0.93750 1.26903 0.96392 0.98269 1.04058 1.70906 1.18839 1.35770 1.28975 0.83213 0.76353 0.75637 0.72920 1.21257 1.19901 1.21545 1.21173 0.90534 0.97781 0.88769 1.21877 0.99463 0.95394 0.84244 1.45947 1.11825 1.54522 1.23869 1.21502 0.81647 0.79720 0.87812 1.90687 1.50017 1.44823 1.62058 1.21418 0.99700 0.97024 0.93506 0.85901 1.20427 1.02595 0.90977 0.97818 1.22061 0.99017 1.00632 0.96151 1.22272 0.97939 0.97057 1.00213 1.20504 1.02031 0.94536 0.95416 1.21419 0.93716 1.01141 0.97792 0.92539 0.92003 0.94575 0.93887 0.94741 0.93884 0.90854 0.92556 0.96061 0.95000 0.74698 0.88493 0.92097 0.85909 0.85954 0.89739 0.89341 0.93161 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.52 10.21 71.98 0.74 -4.78 16 2 C 0.13 5.98 5.90 86.38 0.51 6.49 16 3 N -0.60 -29.08 2.36 -701.99 -1.66 -30.73 16 4 C -0.38 -20.69 9.25 84.03 0.78 -19.91 16 5 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 6 C -0.06 -3.15 4.52 84.86 0.38 -2.77 16 7 N -0.91 -55.48 12.22 21.65 0.26 -55.21 16 8 Si 1.09 50.77 30.05 68.60 2.06 52.84 16 9 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 C 0.14 5.57 5.76 86.38 0.50 6.07 16 13 C 0.12 4.74 6.00 86.38 0.52 5.26 16 14 N -0.71 -21.28 5.47 -463.06 -2.53 -23.81 16 15 C 0.51 16.23 7.13 87.66 0.62 16.85 16 16 O -0.60 -25.81 15.91 -3.03 -0.05 -25.85 16 17 C -0.10 -2.06 2.58 -11.40 -0.03 -2.09 16 18 H 0.12 2.05 8.13 -2.39 -0.02 2.03 16 19 C -0.08 -1.46 5.29 29.66 0.16 -1.30 16 20 C -0.16 -2.39 9.80 27.04 0.27 -2.12 16 21 C -0.16 -2.20 9.80 27.04 0.27 -1.93 16 22 C -0.09 -1.34 6.12 29.66 0.18 -1.15 16 23 C -0.10 -2.30 4.69 30.73 0.14 -2.16 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.78 8.04 -2.38 -0.02 1.77 16 28 H 0.03 1.83 5.70 -2.38 -0.01 1.82 16 29 H 0.25 16.03 8.10 -92.71 -0.75 15.28 16 30 H 0.07 2.37 8.07 -2.38 -0.02 2.35 16 31 H 0.06 2.11 8.04 -2.39 -0.02 2.09 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.42 8.88 8.22 -92.71 -0.76 8.12 16 35 H 0.10 1.35 7.95 -2.39 -0.02 1.33 16 36 H 0.06 1.34 8.10 -2.38 -0.02 1.32 16 37 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 38 H 0.12 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.31 8.12 -2.38 -0.02 1.29 16 42 H 0.06 1.50 7.91 -2.39 -0.02 1.49 16 Total: -1.00 -71.72 341.93 3.35 -68.37 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.23 Total: 17.96 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.03 Total: -3.55 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -3.92 Total: -109.76 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.85 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.06 Total: 52.84 kcal Total: -71.72 3.35 -68.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480961716.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.900 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds