Wall clock time and date at job start Mon Mar 30 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00227 * 2 1 4 4 C 1.52999 * 109.47260 * 89.99790 * 3 2 1 5 5 N 1.46498 * 109.47072 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99727 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00392 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99586 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00460 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00129 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00122 * 10 8 6 14 14 C 1.34773 * 119.99805 * 179.97438 * 2 1 3 15 15 O 1.21286 * 119.99991 * 179.97438 * 14 2 1 16 16 C 1.50700 * 120.00253 * 0.02562 * 14 2 1 17 17 C 1.53001 * 109.47044 * 180.02562 * 16 14 2 18 18 H 1.08999 * 110.44254 * 54.29544 * 17 16 14 19 19 C 1.54896 * 110.48384 * 291.75211 * 17 16 14 20 20 C 1.54888 * 102.74698 * 203.38439 * 19 17 16 21 21 C 1.54272 * 104.19826 * 37.94103 * 20 19 17 22 22 H 1.09003 * 117.40778 * 116.36935 * 21 20 19 23 23 C 1.52995 * 118.19899 * 270.99803 * 21 20 19 24 24 C 1.54084 * 106.62195 * 336.27971 * 21 20 19 25 25 H 1.08996 * 121.34652 * 138.12392 * 24 21 20 26 26 H 1.08996 * 109.47193 * 89.99991 * 1 2 3 27 27 H 1.09006 * 109.47362 * 210.00127 * 1 2 3 28 28 H 1.09000 * 109.47413 * 330.00387 * 1 2 3 29 29 H 1.09009 * 109.46775 * 330.00031 * 3 2 1 30 30 H 1.08994 * 109.47437 * 210.00243 * 3 2 1 31 31 H 1.09000 * 109.46925 * 60.00185 * 4 3 2 32 32 H 1.09007 * 109.47238 * 300.00210 * 4 3 2 33 33 H 0.96998 * 120.00095 * 359.97438 * 5 4 3 34 34 H 0.97001 * 119.99952 * 359.97438 * 9 8 6 35 35 H 1.09002 * 109.46866 * 299.99234 * 16 14 2 36 36 H 1.08991 * 109.47377 * 59.99481 * 16 14 2 37 37 H 1.08996 * 110.75201 * 321.69382 * 19 17 16 38 38 H 1.08998 * 110.75565 * 84.88643 * 19 17 16 39 39 H 1.09002 * 110.48858 * 156.62425 * 20 19 17 40 40 H 1.09001 * 110.48705 * 279.26488 * 20 19 17 41 41 H 1.08998 * 117.46150 * 201.21235 * 23 21 20 42 42 H 1.09004 * 117.46155 * 346.04346 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1845 2.9794 1.4424 6 6 3.5272 3.5722 2.6284 7 1 3.2575 3.1044 3.5637 8 6 4.2213 4.7743 2.6283 9 7 4.5496 5.3447 1.4885 10 14 4.6881 5.5833 4.2460 11 1 5.4187 6.8474 3.9747 12 1 5.5588 4.6664 5.0249 13 1 3.4587 5.8789 5.0247 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1672 0.0001 16 6 1.3853 -2.4723 0.0005 17 6 2.3796 -3.6352 0.0018 18 1 3.0794 -3.5368 0.8317 19 6 3.1416 -3.6983 -1.3453 20 6 3.5937 -5.1782 -1.4131 21 6 2.4054 -5.9644 -0.8216 22 1 1.8845 -6.6582 -1.4816 23 6 2.3774 -6.2040 0.6892 24 6 1.6336 -4.9832 0.0816 25 1 0.5440 -4.9543 0.0864 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6084 2.0284 -0.5139 30 1 3.1499 1.1384 -0.5138 31 1 3.0416 0.9508 1.9563 32 1 1.5000 1.8408 1.9563 33 1 3.4271 3.3994 0.6024 34 1 4.3068 4.9248 0.6484 35 1 0.7584 -2.5299 0.8904 36 1 0.7590 -2.5302 -0.8896 37 1 2.4779 -3.4588 -2.1760 38 1 4.0017 -3.0289 -1.3343 39 1 3.7715 -5.4758 -2.4465 40 1 4.4897 -5.3314 -0.8115 41 1 1.7650 -7.0276 1.0562 42 1 3.2966 -6.0183 1.2447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481250042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:28 Heat of formation + Delta-G solvation = -4.110135 kcal Electronic energy + Delta-G solvation = -20167.951197 eV Core-core repulsion = 17148.787951 eV Total energy + Delta-G solvation = -3019.163246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.28664 -39.05135 -35.98522 -34.57236 -32.87067 -31.43341 -30.47590 -28.15129 -26.65390 -25.27727 -23.32971 -22.85593 -21.67618 -20.53345 -19.67439 -18.98996 -17.32101 -16.87454 -16.25562 -15.86824 -15.52090 -14.94648 -14.50119 -13.72433 -13.66424 -13.63032 -13.34502 -13.24059 -13.02675 -12.85037 -12.76631 -12.29495 -12.08307 -11.41573 -11.39758 -11.27417 -10.98141 -10.85265 -10.76946 -10.61087 -10.57011 -10.28072 -9.96769 -9.80703 -9.59617 -9.20158 -8.85385 -8.50010 -6.98670 -6.07836 -3.07482 2.76470 3.07438 3.38960 3.54050 3.58464 3.75632 4.21762 4.43822 4.53947 4.66386 4.72218 4.88728 4.99609 5.03311 5.11989 5.25131 5.29701 5.33175 5.37934 5.41387 5.52029 5.55299 5.60971 5.66871 5.67947 5.74446 5.79339 5.84199 5.89457 5.97604 6.03775 6.05797 6.18520 6.34150 6.51021 6.69444 6.87052 7.50533 7.83335 8.32228 8.78385 9.25309 10.11463 10.25945 11.40923 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003323 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.956820 B = 8424.792058 C = 8680.193242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.107 3.893 4 C 0.149 3.851 5 N -0.742 5.742 6 C -0.330 4.330 7 H 0.064 0.936 8 C -0.046 4.046 9 N -0.944 5.944 10 Si 1.082 2.918 11 H -0.284 1.284 12 H -0.295 1.295 13 H -0.295 1.295 14 C 0.509 3.491 15 O -0.531 6.531 16 C -0.129 4.129 17 C -0.047 4.047 18 H 0.084 0.916 19 C -0.115 4.115 20 C -0.098 4.098 21 C -0.165 4.165 22 H 0.105 0.895 23 C -0.155 4.155 24 C -0.164 4.164 25 H 0.110 0.890 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.367 0.633 34 H 0.255 0.745 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 -22.023 -6.202 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.349 5.349 3 C -0.016 4.016 4 C 0.020 3.980 5 N -0.388 5.388 6 C -0.461 4.461 7 H 0.082 0.918 8 C -0.243 4.243 9 N -0.590 5.590 10 Si 0.912 3.088 11 H -0.210 1.210 12 H -0.222 1.222 13 H -0.223 1.223 14 C 0.297 3.703 15 O -0.407 6.407 16 C -0.169 4.169 17 C -0.066 4.066 18 H 0.102 0.898 19 C -0.153 4.153 20 C -0.135 4.135 21 C -0.183 4.183 22 H 0.123 0.877 23 C -0.192 4.192 24 C -0.182 4.182 25 H 0.128 0.872 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.036 0.964 33 H 0.200 0.800 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.307 -20.792 -5.316 23.392 hybrid contribution -1.032 -1.242 -0.877 1.838 sum -10.339 -22.034 -6.193 25.115 Atomic orbital electron populations 1.21803 0.79756 1.03411 1.01575 1.47832 1.06881 1.06368 1.73780 1.21681 0.97402 0.83502 0.98991 1.20839 0.94968 0.88925 0.93240 1.42229 1.68240 1.22461 1.05886 1.20019 1.34364 1.05890 0.85848 0.91810 1.25813 0.98560 0.95137 1.04804 1.70879 1.49612 1.41323 0.97164 0.83222 0.75952 0.76132 0.73455 1.20968 1.22229 1.22260 1.20671 0.88214 0.85266 0.76172 1.90715 1.13896 1.87212 1.48903 1.21706 0.99081 0.92096 1.03981 1.21321 0.95653 0.90387 0.99239 0.89786 1.22742 1.00568 0.95890 0.96090 1.21977 0.96542 0.94511 1.00485 1.23306 1.00308 1.02036 0.92685 0.87666 1.23411 1.02167 0.98582 0.95070 1.23678 0.98082 0.90131 1.06293 0.87185 0.92706 0.91162 0.90675 0.90758 0.89872 0.95877 0.96429 0.80021 0.93420 0.88922 0.89075 0.91892 0.89963 0.91432 0.91436 0.88601 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.24 59.85 0.61 1.38 16 2 N -0.61 -8.79 2.87 -181.57 -0.52 -9.32 16 3 C 0.11 1.89 5.52 -4.04 -0.02 1.87 16 4 C 0.15 3.28 6.58 -4.04 -0.03 3.25 16 5 N -0.74 -19.91 5.60 -59.91 -0.34 -20.25 16 6 C -0.33 -9.83 9.99 -15.06 -0.15 -9.98 16 7 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 9 N -0.94 -30.08 13.70 55.49 0.76 -29.32 16 10 Si 1.08 26.71 29.92 -169.99 -5.09 21.62 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.51 7.55 7.47 -10.99 -0.08 7.47 16 15 O -0.53 -10.11 14.18 5.55 0.08 -10.03 16 16 C -0.13 -1.32 3.73 -27.88 -0.10 -1.42 16 17 C -0.05 -0.51 2.27 -88.95 -0.20 -0.71 16 18 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 19 C -0.12 -1.28 5.69 -24.74 -0.14 -1.42 16 20 C -0.10 -0.92 6.62 -25.07 -0.17 -1.08 16 21 C -0.17 -1.41 6.86 -89.39 -0.61 -2.02 16 22 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.16 -1.28 10.20 -25.50 -0.26 -1.54 16 24 C -0.16 -1.43 6.47 -88.15 -0.57 -2.00 16 25 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.53 6.44 -51.93 -0.33 0.19 16 28 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.07 1.20 8.07 -51.92 -0.42 0.78 16 30 H 0.08 1.63 7.42 -51.93 -0.39 1.24 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 9.89 6.50 -40.82 -0.27 9.63 16 34 H 0.25 7.98 6.77 -40.82 -0.28 7.70 16 35 H 0.09 0.80 7.40 -51.93 -0.38 0.42 16 36 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 37 H 0.06 0.65 8.00 -51.93 -0.42 0.24 16 38 H 0.08 1.11 7.16 -51.93 -0.37 0.74 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -35.08 337.58 -8.95 -44.02 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.11 Total: 5.87 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.82 Total: -7.69 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.10 Total: -58.88 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -5.09 Total: 21.62 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.08 -8.95 -44.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481250042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.912 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds