Wall clock time and date at job start Mon Mar 30 2020 01:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00227 * 2 1 4 4 C 1.52999 * 109.47260 * 89.99790 * 3 2 1 5 5 N 1.46498 * 109.47072 * 180.02562 * 4 3 2 6 6 C 1.36943 * 119.99727 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00392 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99586 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00460 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99694 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 10 8 6 12 12 H 1.48503 * 109.47261 * 60.00129 * 10 8 6 13 13 H 1.48500 * 109.47454 * 300.00122 * 10 8 6 14 14 C 1.34773 * 119.99805 * 179.97438 * 2 1 3 15 15 O 1.21286 * 119.99991 * 179.97438 * 14 2 1 16 16 C 1.50700 * 120.00253 * 0.02562 * 14 2 1 17 17 C 1.53001 * 109.47044 * 180.02562 * 16 14 2 18 18 H 1.08999 * 110.44254 * 54.29544 * 17 16 14 19 19 C 1.54896 * 110.48384 * 291.75211 * 17 16 14 20 20 C 1.54888 * 102.74698 * 203.38439 * 19 17 16 21 21 C 1.54272 * 104.19826 * 37.94103 * 20 19 17 22 22 H 1.09003 * 117.40778 * 116.36935 * 21 20 19 23 23 C 1.52995 * 118.19899 * 270.99803 * 21 20 19 24 24 C 1.54084 * 106.62195 * 336.27971 * 21 20 19 25 25 H 1.08996 * 121.34652 * 138.12392 * 24 21 20 26 26 H 1.08996 * 109.47193 * 89.99991 * 1 2 3 27 27 H 1.09006 * 109.47362 * 210.00127 * 1 2 3 28 28 H 1.09000 * 109.47413 * 330.00387 * 1 2 3 29 29 H 1.09009 * 109.46775 * 330.00031 * 3 2 1 30 30 H 1.08994 * 109.47437 * 210.00243 * 3 2 1 31 31 H 1.09000 * 109.46925 * 60.00185 * 4 3 2 32 32 H 1.09007 * 109.47238 * 300.00210 * 4 3 2 33 33 H 0.96998 * 120.00095 * 359.97438 * 5 4 3 34 34 H 0.97001 * 119.99952 * 359.97438 * 9 8 6 35 35 H 1.09002 * 109.46866 * 299.99234 * 16 14 2 36 36 H 1.08991 * 109.47377 * 59.99481 * 16 14 2 37 37 H 1.08996 * 110.75201 * 321.69382 * 19 17 16 38 38 H 1.08998 * 110.75565 * 84.88643 * 19 17 16 39 39 H 1.09002 * 110.48858 * 156.62425 * 20 19 17 40 40 H 1.09001 * 110.48705 * 279.26488 * 20 19 17 41 41 H 1.08998 * 117.46150 * 201.21235 * 23 21 20 42 42 H 1.09004 * 117.46155 * 346.04346 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1845 2.9794 1.4424 6 6 3.5272 3.5722 2.6284 7 1 3.2575 3.1044 3.5637 8 6 4.2213 4.7743 2.6283 9 7 4.5496 5.3447 1.4885 10 14 4.6881 5.5833 4.2460 11 1 5.4187 6.8474 3.9747 12 1 5.5588 4.6664 5.0249 13 1 3.4587 5.8789 5.0247 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1672 0.0001 16 6 1.3853 -2.4723 0.0005 17 6 2.3796 -3.6352 0.0018 18 1 3.0794 -3.5368 0.8317 19 6 3.1416 -3.6983 -1.3453 20 6 3.5937 -5.1782 -1.4131 21 6 2.4054 -5.9644 -0.8216 22 1 1.8845 -6.6582 -1.4816 23 6 2.3774 -6.2040 0.6892 24 6 1.6336 -4.9832 0.0816 25 1 0.5440 -4.9543 0.0864 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6084 2.0284 -0.5139 30 1 3.1499 1.1384 -0.5138 31 1 3.0416 0.9508 1.9563 32 1 1.5000 1.8408 1.9563 33 1 3.4271 3.3994 0.6024 34 1 4.3068 4.9248 0.6484 35 1 0.7584 -2.5299 0.8904 36 1 0.7590 -2.5302 -0.8896 37 1 2.4779 -3.4588 -2.1760 38 1 4.0017 -3.0289 -1.3343 39 1 3.7715 -5.4758 -2.4465 40 1 4.4897 -5.3314 -0.8115 41 1 1.7650 -7.0276 1.0562 42 1 3.2966 -6.0183 1.2447 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481250042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:27 Heat of formation + Delta-G solvation = -26.357435 kcal Electronic energy + Delta-G solvation = -20168.915913 eV Core-core repulsion = 17148.787951 eV Total energy + Delta-G solvation = -3020.127962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31233 -39.96553 -37.57934 -36.30360 -33.93223 -33.18103 -31.40731 -29.73709 -27.60784 -26.57912 -25.19638 -23.74274 -23.27447 -21.33568 -20.43562 -20.14569 -19.41685 -17.98974 -17.30188 -17.22266 -16.47312 -16.41567 -15.82767 -15.66310 -15.27795 -15.00722 -14.52583 -14.17647 -14.03500 -13.82571 -13.68955 -13.28400 -13.08509 -12.86327 -12.76791 -12.71407 -12.38963 -12.15849 -12.00123 -11.89791 -11.69052 -11.59174 -11.41464 -11.01287 -10.97393 -10.73390 -10.51290 -9.73205 -9.22893 -8.48242 -5.43378 1.55365 1.62268 1.66455 1.83240 1.94896 2.68284 2.71562 3.32460 3.40246 3.64190 3.75885 3.81920 3.85458 4.05137 4.10152 4.20798 4.27953 4.30503 4.38962 4.42257 4.49119 4.54476 4.61617 4.68990 4.69560 4.85545 4.88108 4.93544 4.95442 4.96946 4.99983 5.08254 5.20034 5.34753 5.37504 5.42233 5.52089 5.52868 6.39950 6.41614 6.99587 7.18304 7.89012 7.99782 9.03669 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031668 B = 0.003323 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.956820 B = 8424.792058 C = 8680.193242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.615 5.615 3 C 0.122 3.878 4 C 0.155 3.845 5 N -0.755 5.755 6 C -0.344 4.344 7 H 0.064 0.936 8 C -0.101 4.101 9 N -0.970 5.970 10 Si 1.132 2.868 11 H -0.288 1.288 12 H -0.280 1.280 13 H -0.272 1.272 14 C 0.499 3.501 15 O -0.585 6.585 16 C -0.116 4.116 17 C -0.050 4.050 18 H 0.051 0.949 19 C -0.116 4.116 20 C -0.099 4.099 21 C -0.163 4.163 22 H 0.124 0.876 23 C -0.158 4.158 24 C -0.160 4.160 25 H 0.135 0.865 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.056 0.944 31 H -0.004 1.004 32 H 0.029 0.971 33 H 0.363 0.637 34 H 0.244 0.756 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.116 0.884 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -23.539 -5.910 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C -0.002 4.002 4 C 0.028 3.972 5 N -0.401 5.401 6 C -0.475 4.475 7 H 0.082 0.918 8 C -0.292 4.292 9 N -0.618 5.618 10 Si 0.955 3.045 11 H -0.214 1.214 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.155 4.155 17 C -0.069 4.069 18 H 0.069 0.931 19 C -0.154 4.154 20 C -0.137 4.137 21 C -0.181 4.181 22 H 0.142 0.858 23 C -0.195 4.195 24 C -0.178 4.178 25 H 0.153 0.847 26 H 0.098 0.902 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.014 0.986 32 H 0.047 0.953 33 H 0.195 0.805 34 H 0.055 0.945 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.079 -22.356 -5.033 25.904 hybrid contribution -0.178 -0.812 -0.987 1.291 sum -12.257 -23.169 -6.020 26.893 Atomic orbital electron populations 1.22150 0.76425 1.04854 1.03709 1.47966 1.08815 1.04800 1.73181 1.21282 0.97334 0.85876 0.95757 1.20881 0.93994 0.86269 0.96098 1.42426 1.68772 1.23846 1.05020 1.20377 1.34075 1.06169 0.86841 0.91823 1.27390 0.98463 0.96091 1.07268 1.70991 1.51225 1.42027 0.97529 0.82605 0.76706 0.75163 0.70031 1.21376 1.20645 1.19756 1.21632 0.87915 0.86761 0.74782 1.90701 1.16561 1.88011 1.51258 1.21745 0.98677 0.88534 1.06592 1.21269 0.95611 0.92323 0.97705 0.93093 1.22694 0.99572 0.96253 0.96873 1.21972 0.96794 0.93740 1.01175 1.23340 0.99597 1.02125 0.93013 0.85767 1.23499 1.02004 0.99052 0.94914 1.23668 0.99030 0.88538 1.06529 0.84678 0.90184 0.88140 0.90894 0.88863 0.92528 0.98611 0.95339 0.80532 0.94526 0.86382 0.85832 0.90804 0.93622 0.90283 0.92700 0.86548 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.24 127.77 1.31 2.44 16 2 N -0.61 -16.88 2.87 -846.76 -2.43 -19.31 16 3 C 0.12 4.35 5.52 86.38 0.48 4.83 16 4 C 0.16 6.97 6.58 86.38 0.57 7.54 16 5 N -0.76 -41.48 5.60 -343.45 -1.92 -43.41 16 6 C -0.34 -20.67 9.99 84.03 0.84 -19.83 16 7 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 8 C -0.10 -6.11 5.50 84.86 0.47 -5.65 16 9 N -0.97 -62.77 13.70 21.65 0.30 -62.48 16 10 Si 1.13 53.53 29.92 68.60 2.05 55.58 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.50 14.65 7.47 87.66 0.66 15.30 16 15 O -0.59 -23.52 14.18 -3.05 -0.04 -23.56 16 16 C -0.12 -2.10 3.73 29.85 0.11 -1.99 16 17 C -0.05 -1.05 2.27 -9.71 -0.02 -1.07 16 18 H 0.05 1.39 7.96 -2.39 -0.02 1.37 16 19 C -0.12 -2.60 5.69 31.89 0.18 -2.41 16 20 C -0.10 -1.83 6.62 31.67 0.21 -1.62 16 21 C -0.16 -2.39 6.86 -10.00 -0.07 -2.46 16 22 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 23 C -0.16 -2.30 10.20 31.39 0.32 -1.98 16 24 C -0.16 -2.36 6.47 -9.20 -0.06 -2.42 16 25 H 0.14 1.37 8.05 -2.39 -0.02 1.35 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.10 1.04 6.44 -2.38 -0.02 1.02 16 28 H 0.07 1.25 8.07 -2.39 -0.02 1.23 16 29 H 0.09 2.97 8.07 -2.38 -0.02 2.95 16 30 H 0.06 2.33 7.42 -2.39 -0.02 2.31 16 31 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.36 20.22 6.50 -92.71 -0.60 19.62 16 34 H 0.24 15.75 6.77 -92.71 -0.63 15.13 16 35 H 0.12 1.58 7.40 -2.39 -0.02 1.56 16 36 H 0.12 1.50 8.03 -2.39 -0.02 1.48 16 37 H 0.07 1.45 8.00 -2.39 -0.02 1.43 16 38 H 0.04 1.34 7.16 -2.39 -0.02 1.32 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -79.13 337.58 3.47 -75.67 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.53 Total: 26.83 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.99 Total: -9.32 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -4.06 Total: -125.20 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.04 Total: -23.56 kcal Atomic # 14 Polarization: 53.53 SS G_CDS: 2.05 Total: 55.58 kcal Total: -79.13 3.47 -75.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481250042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.310 kcal (2) G-P(sol) polarization free energy of solvation -79.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds