Wall clock time and date at job start Mon Mar 30 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 N 1.46497 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00370 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99711 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00367 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99961 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99931 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46861 * 60.00677 * 10 8 6 12 12 H 1.48502 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47481 * 300.00367 * 10 8 6 14 14 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00463 * 179.97438 * 14 2 1 16 16 C 1.50700 * 119.99675 * 359.72090 * 14 2 1 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 2 18 18 H 1.09000 * 110.43414 * 56.08796 * 17 16 14 19 19 C 1.54884 * 110.48535 * 293.54653 * 17 16 14 20 20 C 1.54886 * 102.74873 * 203.37787 * 19 17 16 21 21 C 1.54265 * 104.19727 * 37.94126 * 20 19 17 22 22 H 1.09000 * 117.41557 * 195.19687 * 21 20 19 23 23 C 1.52999 * 118.19689 * 40.56949 * 21 20 19 24 24 C 1.53002 * 60.37810 * 266.38439 * 23 21 20 25 25 H 1.09001 * 119.75218 * 248.87714 * 24 23 21 26 26 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 27 27 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 28 28 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 29 29 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 30 30 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 31 31 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 32 32 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 33 33 H 0.97001 * 120.00037 * 359.97438 * 5 4 3 34 34 H 0.97004 * 119.99711 * 179.97438 * 9 8 6 35 35 H 1.09009 * 109.47352 * 300.27556 * 16 14 2 36 36 H 1.08998 * 109.47585 * 60.27844 * 16 14 2 37 37 H 1.09002 * 110.75686 * 321.69065 * 19 17 16 38 38 H 1.09004 * 110.75826 * 84.87690 * 19 17 16 39 39 H 1.09000 * 110.48738 * 156.62097 * 20 19 17 40 40 H 1.09003 * 110.48862 * 279.26087 * 20 19 17 41 41 H 1.09003 * 117.46219 * 13.98354 * 23 21 20 42 42 H 1.08998 * 117.46185 * 158.81227 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1844 2.9795 -1.4426 6 6 3.5261 3.5728 -2.6284 7 1 3.2564 3.1050 -3.5637 8 6 4.2192 4.7755 -2.6284 9 7 4.5484 5.3453 -1.4885 10 14 4.6860 5.5845 -4.2461 11 1 3.4564 5.8791 -5.0251 12 1 5.4144 6.8498 -3.9748 13 1 5.5575 4.6682 -5.0246 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 0.0053 17 6 2.3797 -3.6352 0.0104 18 1 3.0601 -3.5504 0.8577 19 6 3.1725 -3.6764 -1.3195 20 6 3.6265 -5.1550 -1.4011 21 6 2.4252 -5.9506 -0.8501 22 1 2.5970 -6.9904 -0.5719 23 6 1.0177 -5.5061 -1.2529 24 6 1.6325 -4.9843 0.0474 25 1 1.2250 -5.3062 1.0058 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1384 0.5137 31 1 3.0415 0.9508 -1.9564 32 1 1.5000 1.8408 -1.9563 33 1 3.4263 3.3998 -0.6025 34 1 5.0331 6.1856 -1.4886 35 1 0.7588 -2.5261 0.8956 36 1 0.7587 -2.5340 -0.8844 37 1 2.5281 -3.4232 -2.1614 38 1 4.0319 -3.0072 -1.2779 39 1 3.8281 -5.4357 -2.4349 40 1 4.5085 -5.3180 -0.7817 41 1 0.9301 -4.8062 -2.0839 42 1 0.2160 -6.2399 -1.1703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481250044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:31 Heat of formation + Delta-G solvation = -4.162987 kcal Electronic energy + Delta-G solvation = -20283.816815 eV Core-core repulsion = 17264.651276 eV Total energy + Delta-G solvation = -3019.165538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40933 -39.12567 -35.86408 -34.30859 -32.56948 -31.33443 -30.40193 -28.28927 -26.60693 -25.37245 -23.69641 -23.31675 -21.45024 -19.90782 -19.43601 -18.67838 -17.20842 -17.04692 -16.31481 -15.92327 -15.37768 -14.70440 -14.41324 -13.88919 -13.78437 -13.47019 -13.23160 -13.06391 -12.80862 -12.76880 -12.62667 -12.32628 -11.83068 -11.49116 -11.20810 -11.05048 -11.00740 -10.93727 -10.86715 -10.75771 -10.62271 -10.21941 -10.11698 -9.79852 -9.72609 -9.43970 -8.83900 -8.43326 -6.90159 -5.73197 -3.02332 2.83412 3.14802 3.47010 3.50426 3.51183 3.52686 4.22931 4.48003 4.61226 4.65390 4.80219 4.89459 5.00457 5.08113 5.15084 5.24201 5.35230 5.41906 5.42794 5.52251 5.57818 5.59032 5.65258 5.68565 5.75450 5.83929 5.89249 5.92582 6.02468 6.07387 6.08006 6.17458 6.30142 6.35647 6.61351 6.78870 6.96231 7.58480 7.72440 8.39215 8.45775 9.56138 10.12803 10.47949 11.49748 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.003591 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.899788 B = 7796.263587 C = 8318.982247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.107 3.893 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.508 3.492 15 O -0.531 6.531 16 C -0.129 4.129 17 C -0.045 4.045 18 H 0.087 0.913 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.167 4.167 22 H 0.107 0.893 23 C -0.155 4.155 24 C -0.163 4.163 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.016 0.984 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 -21.555 4.547 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.349 5.349 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.296 3.704 15 O -0.408 6.408 16 C -0.169 4.169 17 C -0.064 4.064 18 H 0.106 0.894 19 C -0.161 4.161 20 C -0.134 4.134 21 C -0.185 4.185 22 H 0.125 0.875 23 C -0.192 4.192 24 C -0.181 4.181 25 H 0.126 0.874 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.217 0.783 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.085 -21.501 4.386 24.151 hybrid contribution 0.127 0.666 -0.581 0.892 sum -9.957 -20.836 3.806 23.405 Atomic orbital electron populations 1.21794 0.79852 1.03344 1.01539 1.47857 1.06843 1.06460 1.73704 1.21686 0.97454 0.83356 0.99039 1.20898 0.94981 0.89334 0.93279 1.42209 1.67155 1.21604 1.06561 1.19166 1.29515 1.02314 0.85967 0.91282 1.24747 1.01269 0.98044 0.96931 1.69656 1.45034 1.19597 1.23997 0.86235 0.78129 0.78646 0.82992 1.21272 1.21638 1.21220 1.20704 0.88224 0.85294 0.76208 1.90709 1.13888 1.87215 1.48958 1.21685 0.99138 0.92077 1.03975 1.21325 0.95111 0.90390 0.99597 0.89440 1.22602 1.00991 0.96211 0.96326 1.21941 0.96302 0.94452 1.00750 1.23130 0.92034 0.98423 1.04904 0.87543 1.22888 0.95300 1.02928 0.98081 1.23155 1.03913 0.95777 0.95248 0.87396 0.92752 0.90671 0.91256 0.90659 0.89771 0.95990 0.96576 0.78275 0.93441 0.89176 0.89084 0.91859 0.89567 0.91653 0.90955 0.88911 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.24 59.84 0.61 1.38 16 2 N -0.61 -8.80 2.87 -181.57 -0.52 -9.32 16 3 C 0.11 1.90 5.52 -4.04 -0.02 1.88 16 4 C 0.14 3.12 6.58 -4.04 -0.03 3.10 16 5 N -0.73 -19.52 5.60 -59.91 -0.34 -19.86 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 10 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 C 0.51 7.53 7.46 -10.98 -0.08 7.44 16 15 O -0.53 -10.07 14.08 5.55 0.08 -9.99 16 16 C -0.13 -1.33 3.79 -27.88 -0.11 -1.44 16 17 C -0.05 -0.49 2.41 -88.96 -0.21 -0.70 16 18 H 0.09 1.06 8.02 -51.93 -0.42 0.65 16 19 C -0.12 -1.46 5.16 -24.74 -0.13 -1.59 16 20 C -0.10 -0.96 6.77 -25.07 -0.17 -1.13 16 21 C -0.17 -1.45 7.06 -89.50 -0.63 -2.09 16 22 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.16 -1.23 9.83 -26.73 -0.26 -1.50 16 24 C -0.16 -1.41 6.42 -89.50 -0.57 -1.99 16 25 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.75 8.07 -51.93 -0.42 0.34 16 28 H 0.07 0.53 6.45 -51.93 -0.33 0.20 16 29 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 30 H 0.08 1.66 7.42 -51.93 -0.39 1.27 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.09 0.75 8.11 -51.92 -0.42 0.33 16 36 H 0.09 0.83 7.36 -51.93 -0.38 0.44 16 37 H 0.06 0.74 7.26 -51.93 -0.38 0.36 16 38 H 0.09 1.25 7.05 -51.93 -0.37 0.89 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.78 7.21 -51.93 -0.37 0.40 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -33.61 337.17 -8.98 -42.59 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.14 Total: 6.05 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.85 Total: -4.27 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.13 Total: -57.43 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.61 -8.98 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481250044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.432 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds