Wall clock time and date at job start Mon Mar 30 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 N 1.46497 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00370 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99711 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00367 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99961 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99931 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46861 * 60.00677 * 10 8 6 12 12 H 1.48502 * 109.47272 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47481 * 300.00367 * 10 8 6 14 14 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00463 * 179.97438 * 14 2 1 16 16 C 1.50700 * 119.99675 * 359.72090 * 14 2 1 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 2 18 18 H 1.09000 * 110.43414 * 56.08796 * 17 16 14 19 19 C 1.54884 * 110.48535 * 293.54653 * 17 16 14 20 20 C 1.54886 * 102.74873 * 203.37787 * 19 17 16 21 21 C 1.54265 * 104.19727 * 37.94126 * 20 19 17 22 22 H 1.09000 * 117.41557 * 195.19687 * 21 20 19 23 23 C 1.52999 * 118.19689 * 40.56949 * 21 20 19 24 24 C 1.53002 * 60.37810 * 266.38439 * 23 21 20 25 25 H 1.09001 * 119.75218 * 248.87714 * 24 23 21 26 26 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 27 27 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 28 28 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 29 29 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 30 30 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 31 31 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 32 32 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 33 33 H 0.97001 * 120.00037 * 359.97438 * 5 4 3 34 34 H 0.97004 * 119.99711 * 179.97438 * 9 8 6 35 35 H 1.09009 * 109.47352 * 300.27556 * 16 14 2 36 36 H 1.08998 * 109.47585 * 60.27844 * 16 14 2 37 37 H 1.09002 * 110.75686 * 321.69065 * 19 17 16 38 38 H 1.09004 * 110.75826 * 84.87690 * 19 17 16 39 39 H 1.09000 * 110.48738 * 156.62097 * 20 19 17 40 40 H 1.09003 * 110.48862 * 279.26087 * 20 19 17 41 41 H 1.09003 * 117.46219 * 13.98354 * 23 21 20 42 42 H 1.08998 * 117.46185 * 158.81227 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1844 2.9795 -1.4426 6 6 3.5261 3.5728 -2.6284 7 1 3.2564 3.1050 -3.5637 8 6 4.2192 4.7755 -2.6284 9 7 4.5484 5.3453 -1.4885 10 14 4.6860 5.5845 -4.2461 11 1 3.4564 5.8791 -5.0251 12 1 5.4144 6.8498 -3.9748 13 1 5.5575 4.6682 -5.0246 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 0.0053 17 6 2.3797 -3.6352 0.0104 18 1 3.0601 -3.5504 0.8577 19 6 3.1725 -3.6764 -1.3195 20 6 3.6265 -5.1550 -1.4011 21 6 2.4252 -5.9506 -0.8501 22 1 2.5970 -6.9904 -0.5719 23 6 1.0177 -5.5061 -1.2529 24 6 1.6325 -4.9843 0.0474 25 1 1.2250 -5.3062 1.0058 26 1 -0.3633 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1384 0.5137 31 1 3.0415 0.9508 -1.9564 32 1 1.5000 1.8408 -1.9563 33 1 3.4263 3.3998 -0.6025 34 1 5.0331 6.1856 -1.4886 35 1 0.7588 -2.5261 0.8956 36 1 0.7587 -2.5340 -0.8844 37 1 2.5281 -3.4232 -2.1614 38 1 4.0319 -3.0072 -1.2779 39 1 3.8281 -5.4357 -2.4349 40 1 4.5085 -5.3180 -0.7817 41 1 0.9301 -4.8062 -2.0839 42 1 0.2160 -6.2399 -1.1703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481250044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:31 Heat of formation + Delta-G solvation = -25.151293 kcal Electronic energy + Delta-G solvation = -20284.726936 eV Core-core repulsion = 17264.651276 eV Total energy + Delta-G solvation = -3020.075659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37533 -40.11082 -37.37629 -36.05612 -33.73809 -33.04943 -31.33504 -29.87122 -27.56611 -26.70480 -25.14609 -24.37434 -23.16276 -20.70105 -20.40886 -19.65653 -19.19433 -18.11415 -17.38459 -17.05416 -16.65654 -16.41055 -15.55359 -15.35189 -15.23686 -14.96483 -14.50438 -14.30400 -14.08349 -13.76295 -13.39280 -13.24839 -13.08002 -12.87956 -12.85107 -12.54577 -12.36392 -12.21212 -12.17957 -11.95450 -11.89208 -11.77067 -11.57835 -10.99628 -10.90248 -10.75725 -10.38925 -9.65524 -9.09607 -7.99978 -5.31289 1.44384 1.48913 1.55015 1.69008 2.02454 2.54384 2.83961 3.32888 3.43706 3.71507 3.73903 3.96081 4.05253 4.13860 4.17830 4.23532 4.30270 4.34247 4.38328 4.48059 4.54445 4.58822 4.69785 4.76336 4.79147 4.89572 4.95508 4.98837 5.01009 5.05634 5.08228 5.12269 5.32680 5.37935 5.40229 5.40669 5.46547 5.55969 6.21346 6.47287 7.25035 7.27346 7.98842 8.24531 9.23267 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027940 B = 0.003591 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.899788 B = 7796.263587 C = 8318.982247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.615 5.615 3 C 0.121 3.879 4 C 0.151 3.849 5 N -0.744 5.744 6 C -0.255 4.255 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.291 1.291 13 H -0.280 1.280 14 C 0.498 3.502 15 O -0.584 6.584 16 C -0.116 4.116 17 C -0.046 4.046 18 H 0.066 0.934 19 C -0.126 4.126 20 C -0.098 4.098 21 C -0.174 4.174 22 H 0.121 0.879 23 C -0.144 4.144 24 C -0.158 4.158 25 H 0.126 0.874 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.056 0.944 31 H -0.003 1.003 32 H 0.029 0.971 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 -23.062 4.140 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.348 5.348 3 C -0.003 4.003 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.386 4.386 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.288 3.712 15 O -0.464 6.464 16 C -0.156 4.156 17 C -0.065 4.065 18 H 0.085 0.915 19 C -0.164 4.164 20 C -0.135 4.135 21 C -0.192 4.192 22 H 0.139 0.861 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.144 0.856 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.015 0.985 32 H 0.047 0.953 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.710 -23.046 3.973 26.617 hybrid contribution 0.931 1.103 -0.454 1.513 sum -11.778 -21.943 3.519 25.152 Atomic orbital electron populations 1.22128 0.76577 1.04761 1.03621 1.47982 1.08751 1.04921 1.73126 1.21292 0.97287 0.85664 0.96019 1.20936 0.94136 0.86689 0.95953 1.42401 1.67706 1.23001 1.05599 1.19563 1.29440 1.02690 0.86925 0.90954 1.25650 1.01499 0.98762 1.00603 1.69817 1.45878 1.19898 1.26227 0.85135 0.78102 0.77304 0.78746 1.19809 1.21644 1.20624 1.21636 0.87931 0.86742 0.74856 1.90697 1.16473 1.87995 1.51247 1.21714 0.98780 0.88705 1.06368 1.21263 0.95177 0.92208 0.97873 0.91530 1.22535 0.99844 0.96718 0.97304 1.21914 0.97086 0.93445 1.01053 1.23170 0.91840 0.98895 1.05265 0.86134 1.22989 0.95069 1.02851 0.97121 1.23100 1.04036 0.93938 0.96518 0.85627 0.90295 0.90797 0.88375 0.88922 0.92525 0.98483 0.95304 0.79276 0.93709 0.86007 0.86925 0.91827 0.93488 0.91361 0.91503 0.89346 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 10.24 127.77 1.31 2.47 16 2 N -0.61 -16.97 2.87 -846.76 -2.43 -19.41 16 3 C 0.12 4.36 5.52 86.38 0.48 4.84 16 4 C 0.15 6.67 6.58 86.38 0.57 7.24 16 5 N -0.74 -40.70 5.60 -343.45 -1.92 -42.63 16 6 C -0.25 -15.07 9.99 84.03 0.84 -14.23 16 7 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 9 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 10 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 14 C 0.50 14.65 7.46 87.66 0.65 15.30 16 15 O -0.58 -23.33 14.08 -3.04 -0.04 -23.38 16 16 C -0.12 -2.14 3.79 29.85 0.11 -2.03 16 17 C -0.05 -0.96 2.41 -9.72 -0.02 -0.98 16 18 H 0.07 1.65 8.02 -2.39 -0.02 1.63 16 19 C -0.13 -3.07 5.16 31.88 0.16 -2.91 16 20 C -0.10 -1.92 6.77 31.67 0.21 -1.71 16 21 C -0.17 -2.65 7.06 -10.07 -0.07 -2.73 16 22 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 23 C -0.14 -1.80 9.83 30.59 0.30 -1.50 16 24 C -0.16 -2.30 6.42 -10.07 -0.06 -2.37 16 25 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.10 1.07 6.45 -2.39 -0.02 1.06 16 29 H 0.09 2.99 8.07 -2.39 -0.02 2.97 16 30 H 0.06 2.34 7.42 -2.39 -0.02 2.33 16 31 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.38 21.46 7.67 -92.71 -0.71 20.74 16 34 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.12 1.53 8.11 -2.38 -0.02 1.51 16 36 H 0.11 1.64 7.36 -2.39 -0.02 1.62 16 37 H 0.06 1.49 7.26 -2.39 -0.02 1.47 16 38 H 0.05 1.50 7.05 -2.38 -0.02 1.48 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.21 7.21 -2.39 -0.02 1.20 16 42 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -75.34 337.17 3.14 -72.20 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.28 Total: 26.96 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.95 Total: -2.46 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.07 Total: -122.75 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.38 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -75.34 3.14 -72.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481250044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.050 kcal (2) G-P(sol) polarization free energy of solvation -75.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds