Wall clock time and date at job start Mon Mar 30 2020 01:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99734 * 2 1 4 4 C 1.53001 * 109.47065 * 269.99450 * 3 2 1 5 5 N 1.46499 * 109.46960 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99948 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00104 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00034 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00040 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47102 * 60.00417 * 10 8 6 12 12 H 1.48497 * 109.47216 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47435 * 300.00543 * 10 8 6 14 14 C 1.34775 * 120.00241 * 179.97438 * 2 1 3 15 15 O 1.21272 * 120.00343 * 180.02562 * 14 2 1 16 16 C 1.50702 * 119.99406 * 0.02562 * 14 2 1 17 17 C 1.52991 * 109.47602 * 299.99672 * 16 14 2 18 18 C 1.53008 * 117.50031 * 106.67743 * 17 16 14 19 19 C 1.53002 * 117.50471 * 175.33761 * 17 16 14 20 20 C 1.53005 * 109.46644 * 179.97438 * 16 14 2 21 21 C 1.53003 * 117.49760 * 124.90238 * 20 16 14 22 22 C 1.52997 * 117.49756 * 56.23920 * 20 16 14 23 23 H 1.08998 * 109.47503 * 270.00207 * 1 2 3 24 24 H 1.09006 * 109.46926 * 30.00650 * 1 2 3 25 25 H 1.09004 * 109.46928 * 149.99863 * 1 2 3 26 26 H 1.08997 * 109.47074 * 29.99764 * 3 2 1 27 27 H 1.09002 * 109.46651 * 149.99978 * 3 2 1 28 28 H 1.08994 * 109.47269 * 300.00854 * 4 3 2 29 29 H 1.08996 * 109.46826 * 60.00290 * 4 3 2 30 30 H 0.96993 * 120.00316 * 359.97438 * 5 4 3 31 31 H 0.97000 * 119.99803 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47243 * 60.00088 * 16 14 2 33 33 H 1.09000 * 115.55319 * 321.01055 * 17 16 14 34 34 H 1.08993 * 117.50082 * 215.00488 * 18 17 16 35 35 H 1.09002 * 117.49470 * 0.02582 * 18 17 16 36 36 H 1.09004 * 117.49519 * 359.97438 * 19 17 16 37 37 H 1.08990 * 117.50190 * 144.97313 * 19 17 16 38 38 H 1.09003 * 115.54822 * 270.57083 * 20 16 14 39 39 H 1.08999 * 117.50047 * 359.97438 * 21 20 16 40 40 H 1.08994 * 117.49789 * 145.01945 * 21 20 16 41 41 H 1.09003 * 117.49763 * 214.97488 * 22 20 16 42 42 H 1.08992 * 117.50009 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4425 6 6 3.5276 3.5720 -2.6284 7 1 3.2574 3.1044 -3.5637 8 6 4.2216 4.7741 -2.6284 9 7 4.5514 5.3436 -1.4886 10 14 4.6889 5.5828 -4.2462 11 1 3.4595 5.8784 -5.0250 12 1 5.4193 6.8469 -3.9748 13 1 5.5596 4.6659 -5.0248 14 6 2.1390 -1.1672 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3854 -2.4722 0.0005 17 6 0.5053 -2.5531 1.2494 18 6 -1.0032 -2.3780 1.0632 19 6 -0.4261 -3.7598 1.3805 20 6 2.3797 -3.6352 0.0005 21 6 2.2485 -4.6767 1.1136 22 6 3.4120 -3.6820 1.1288 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5002 1.8407 -1.9563 30 1 3.4279 3.3989 -0.6025 31 1 5.0367 6.1835 -1.4886 32 1 0.7591 -2.5302 -0.8897 33 1 0.9487 -2.1580 2.1634 34 1 -1.5522 -1.8678 1.8546 35 1 -1.3687 -2.2057 0.0508 36 1 -0.4122 -4.4960 0.5767 37 1 -0.5950 -4.1589 2.3805 38 1 2.6926 -3.9861 -0.9829 39 1 1.4542 -4.5333 1.8461 40 1 2.4755 -5.7128 0.8626 41 1 4.4039 -4.0642 0.8878 42 1 3.3831 -2.8841 1.8708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481300630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:07 Heat of formation + Delta-G solvation = 39.089171 kcal Electronic energy + Delta-G solvation = -20689.246640 eV Core-core repulsion = 17671.956656 eV Total energy + Delta-G solvation = -3017.289984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.60169 -38.08278 -36.37743 -35.33604 -34.17427 -31.46118 -29.76634 -27.99408 -26.24597 -23.74260 -23.24781 -22.35205 -21.81301 -21.64101 -20.16238 -18.52679 -17.30145 -17.01493 -16.19495 -15.85869 -15.37833 -14.84822 -14.57678 -14.10298 -13.85072 -13.58994 -13.17619 -13.14948 -12.91970 -12.73097 -12.52267 -11.91228 -11.66176 -11.60807 -11.36440 -11.14261 -10.93430 -10.85591 -10.62618 -10.50611 -10.40280 -10.24373 -10.10842 -9.96672 -9.71890 -9.33454 -8.83072 -8.38181 -6.89234 -5.72442 -3.01502 2.82830 3.12385 3.45078 3.47480 3.51384 3.52969 3.88335 4.34568 4.50084 4.55683 4.64953 4.80647 4.82453 4.93065 5.05074 5.16635 5.22149 5.31135 5.36182 5.44026 5.55242 5.56924 5.61914 5.68439 5.71761 5.75885 5.83249 5.90039 5.95724 5.99682 6.09508 6.14476 6.19072 6.22320 6.63798 6.80426 6.98368 7.61718 7.73242 8.42282 8.46797 9.56929 10.13679 10.48891 11.50521 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033326 B = 0.003815 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.991165 B = 7337.876878 C = 7773.220433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.515 3.485 15 O -0.524 6.524 16 C -0.045 4.045 17 C -0.145 4.145 18 C -0.179 4.179 19 C -0.170 4.170 20 C -0.136 4.136 21 C -0.190 4.190 22 C -0.150 4.150 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.384 0.616 31 H 0.256 0.744 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.973 -19.811 7.500 24.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.343 5.343 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.302 3.698 15 O -0.399 6.399 16 C -0.066 4.066 17 C -0.164 4.164 18 C -0.216 4.216 19 C -0.207 4.207 20 C -0.154 4.154 21 C -0.227 4.227 22 C -0.187 4.187 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.294 -19.756 7.331 24.396 hybrid contribution 0.279 0.761 -0.718 1.083 sum -12.015 -18.995 6.613 23.429 Atomic orbital electron populations 1.22134 0.79901 1.03091 1.01637 1.47780 1.06836 1.06192 1.73515 1.21680 0.97415 0.83364 0.99005 1.20899 0.94972 0.89331 0.93310 1.42207 1.67085 1.21676 1.06550 1.19170 1.29466 1.02343 0.85974 0.91286 1.24740 1.01266 0.98044 0.96913 1.69653 1.45012 1.19629 1.23993 0.86239 0.78126 0.78647 0.83012 1.21272 1.21637 1.21237 1.20426 0.87987 0.84912 0.76456 1.90730 1.13685 1.86998 1.48492 1.20402 0.95956 0.92131 0.98105 1.22118 0.91387 1.04000 0.98886 1.23333 0.95113 1.00006 1.03112 1.23062 1.03081 0.91567 1.03023 1.21853 1.00913 0.97320 0.95337 1.23391 1.02217 0.95086 1.01972 1.22739 0.94062 1.01035 1.00889 0.92496 0.91174 0.90904 0.90683 0.89835 0.96003 0.96555 0.78283 0.93453 0.88459 0.87592 0.88449 0.88195 0.88309 0.88687 0.87772 0.87520 0.89391 0.89175 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 8.50 59.85 0.51 1.28 16 2 N -0.61 -8.85 2.87 -181.56 -0.52 -9.37 16 3 C 0.11 1.93 5.52 -4.04 -0.02 1.91 16 4 C 0.14 3.15 6.58 -4.04 -0.03 3.12 16 5 N -0.73 -19.62 5.60 -59.91 -0.34 -19.95 16 6 C -0.24 -7.00 9.99 -15.06 -0.15 -7.15 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 10 Si 0.91 23.04 29.55 -169.99 -5.02 18.02 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 C 0.52 7.85 6.88 -10.99 -0.08 7.78 16 15 O -0.52 -10.21 14.33 5.56 0.08 -10.13 16 16 C -0.04 -0.49 1.98 -91.77 -0.18 -0.67 16 17 C -0.15 -1.23 2.95 -90.62 -0.27 -1.50 16 18 C -0.18 -1.15 7.37 -26.69 -0.20 -1.34 16 19 C -0.17 -1.10 7.39 -26.69 -0.20 -1.30 16 20 C -0.14 -1.51 5.48 -90.62 -0.50 -2.01 16 21 C -0.19 -1.72 9.01 -26.69 -0.24 -1.96 16 22 C -0.15 -1.78 8.69 -26.69 -0.23 -2.01 16 23 H 0.06 0.50 7.06 -51.93 -0.37 0.13 16 24 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 25 H 0.07 0.61 4.08 -51.93 -0.21 0.39 16 26 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.38 10.67 7.67 -40.82 -0.31 10.35 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.10 0.94 7.20 -51.93 -0.37 0.57 16 33 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.58 6.62 -51.93 -0.34 0.24 16 36 H 0.10 0.62 7.96 -51.93 -0.41 0.21 16 37 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 38 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.11 0.86 4.74 -51.93 -0.25 0.62 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.21 7.82 -51.93 -0.41 0.80 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -33.77 330.55 -8.60 -42.36 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.83 Total: 6.77 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.67 Total: -4.36 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.13 Total: -57.64 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.77 -8.60 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481300630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.453 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds