Wall clock time and date at job start Mon Mar 30 2020 01:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99734 * 2 1 4 4 C 1.53001 * 109.47065 * 269.99450 * 3 2 1 5 5 N 1.46499 * 109.46960 * 180.02562 * 4 3 2 6 6 C 1.36939 * 119.99948 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00104 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00034 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00040 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47102 * 60.00417 * 10 8 6 12 12 H 1.48497 * 109.47216 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47435 * 300.00543 * 10 8 6 14 14 C 1.34775 * 120.00241 * 179.97438 * 2 1 3 15 15 O 1.21272 * 120.00343 * 180.02562 * 14 2 1 16 16 C 1.50702 * 119.99406 * 0.02562 * 14 2 1 17 17 C 1.52991 * 109.47602 * 299.99672 * 16 14 2 18 18 C 1.53008 * 117.50031 * 106.67743 * 17 16 14 19 19 C 1.53002 * 117.50471 * 175.33761 * 17 16 14 20 20 C 1.53005 * 109.46644 * 179.97438 * 16 14 2 21 21 C 1.53003 * 117.49760 * 124.90238 * 20 16 14 22 22 C 1.52997 * 117.49756 * 56.23920 * 20 16 14 23 23 H 1.08998 * 109.47503 * 270.00207 * 1 2 3 24 24 H 1.09006 * 109.46926 * 30.00650 * 1 2 3 25 25 H 1.09004 * 109.46928 * 149.99863 * 1 2 3 26 26 H 1.08997 * 109.47074 * 29.99764 * 3 2 1 27 27 H 1.09002 * 109.46651 * 149.99978 * 3 2 1 28 28 H 1.08994 * 109.47269 * 300.00854 * 4 3 2 29 29 H 1.08996 * 109.46826 * 60.00290 * 4 3 2 30 30 H 0.96993 * 120.00316 * 359.97438 * 5 4 3 31 31 H 0.97000 * 119.99803 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47243 * 60.00088 * 16 14 2 33 33 H 1.09000 * 115.55319 * 321.01055 * 17 16 14 34 34 H 1.08993 * 117.50082 * 215.00488 * 18 17 16 35 35 H 1.09002 * 117.49470 * 0.02582 * 18 17 16 36 36 H 1.09004 * 117.49519 * 359.97438 * 19 17 16 37 37 H 1.08990 * 117.50190 * 144.97313 * 19 17 16 38 38 H 1.09003 * 115.54822 * 270.57083 * 20 16 14 39 39 H 1.08999 * 117.50047 * 359.97438 * 21 20 16 40 40 H 1.08994 * 117.49789 * 145.01945 * 21 20 16 41 41 H 1.09003 * 117.49763 * 214.97488 * 22 20 16 42 42 H 1.08992 * 117.50009 * 359.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1856 2.9788 -1.4425 6 6 3.5276 3.5720 -2.6284 7 1 3.2574 3.1044 -3.5637 8 6 4.2216 4.7741 -2.6284 9 7 4.5514 5.3436 -1.4886 10 14 4.6889 5.5828 -4.2462 11 1 3.4595 5.8784 -5.0250 12 1 5.4193 6.8469 -3.9748 13 1 5.5596 4.6659 -5.0248 14 6 2.1390 -1.1672 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3854 -2.4722 0.0005 17 6 0.5053 -2.5531 1.2494 18 6 -1.0032 -2.3780 1.0632 19 6 -0.4261 -3.7598 1.3805 20 6 2.3797 -3.6352 0.0005 21 6 2.2485 -4.6767 1.1136 22 6 3.4120 -3.6820 1.1288 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5139 28 1 3.0416 0.9507 -1.9563 29 1 1.5002 1.8407 -1.9563 30 1 3.4279 3.3989 -0.6025 31 1 5.0367 6.1835 -1.4886 32 1 0.7591 -2.5302 -0.8897 33 1 0.9487 -2.1580 2.1634 34 1 -1.5522 -1.8678 1.8546 35 1 -1.3687 -2.2057 0.0508 36 1 -0.4122 -4.4960 0.5767 37 1 -0.5950 -4.1589 2.3805 38 1 2.6926 -3.9861 -0.9829 39 1 1.4542 -4.5333 1.8461 40 1 2.4755 -5.7128 0.8626 41 1 4.4039 -4.0642 0.8878 42 1 3.3831 -2.8841 1.8708 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481300630.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:06 Heat of formation + Delta-G solvation = 17.563008 kcal Electronic energy + Delta-G solvation = -20690.180085 eV Core-core repulsion = 17671.956656 eV Total energy + Delta-G solvation = -3018.223428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.61260 -39.06721 -37.51626 -36.65383 -35.74762 -33.42817 -30.99889 -29.38448 -27.46244 -25.62473 -23.98138 -23.40374 -23.04976 -22.49703 -21.27094 -19.56869 -19.19166 -18.19765 -17.23451 -17.10091 -16.56240 -16.18700 -15.93811 -15.29689 -15.19791 -15.16859 -14.63961 -14.53378 -14.08865 -13.82564 -13.45678 -13.08199 -12.92564 -12.81860 -12.70506 -12.42718 -12.32012 -12.20541 -12.09650 -12.04146 -11.89096 -11.33551 -11.13878 -10.99785 -10.97441 -10.71754 -10.43552 -9.63449 -9.09554 -7.99765 -5.31164 1.44464 1.49063 1.55149 1.66284 1.97358 2.54246 2.84925 3.03481 3.33156 3.58601 3.73726 3.83493 4.00964 4.05485 4.07148 4.16051 4.22508 4.24816 4.31237 4.38923 4.44587 4.54009 4.58097 4.73778 4.84921 4.87615 4.91172 4.98351 5.00285 5.06928 5.09118 5.16594 5.28664 5.30260 5.38119 5.40260 5.40762 5.56551 6.21424 6.46813 7.24367 7.27457 7.98740 8.24655 9.23476 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033326 B = 0.003815 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.991165 B = 7337.876878 C = 7773.220433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.608 5.608 3 C 0.122 3.878 4 C 0.151 3.849 5 N -0.743 5.743 6 C -0.255 4.255 7 H 0.073 0.927 8 C -0.072 4.072 9 N -0.968 5.968 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.506 3.494 15 O -0.578 6.578 16 C -0.033 4.033 17 C -0.164 4.164 18 C -0.167 4.167 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.154 4.154 22 C -0.176 4.176 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.055 0.945 28 H -0.003 1.003 29 H 0.030 0.970 30 H 0.375 0.625 31 H 0.254 0.746 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 -21.153 7.045 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.002 4.002 4 C 0.023 3.977 5 N -0.387 5.387 6 C -0.387 4.387 7 H 0.091 0.909 8 C -0.264 4.264 9 N -0.618 5.618 10 Si 0.807 3.193 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.295 3.705 15 O -0.457 6.457 16 C -0.054 4.054 17 C -0.182 4.182 18 C -0.203 4.203 19 C -0.194 4.194 20 C -0.168 4.168 21 C -0.190 4.190 22 C -0.213 4.213 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.015 0.985 29 H 0.048 0.952 30 H 0.207 0.793 31 H 0.063 0.937 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.139 0.861 40 H 0.123 0.877 41 H 0.099 0.901 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.006 -21.135 6.872 26.815 hybrid contribution 1.095 1.133 -0.555 1.671 sum -13.910 -20.002 6.317 25.169 Atomic orbital electron populations 1.22458 0.76829 1.04408 1.03475 1.47874 1.08608 1.04693 1.72884 1.21292 0.97208 0.85584 0.96076 1.20932 0.94169 0.86719 0.95885 1.42396 1.67640 1.23041 1.05607 1.19568 1.29448 1.02743 0.86915 0.90940 1.25643 1.01458 0.98739 1.00593 1.69816 1.45826 1.19926 1.26236 0.85136 0.78100 0.77304 0.78747 1.19788 1.21630 1.20655 1.21359 0.87703 0.86406 0.74991 1.90703 1.16266 1.87850 1.50891 1.20355 0.95815 0.88982 1.00212 1.21929 0.92272 1.06970 0.97046 1.23453 0.92853 0.99833 1.04194 1.23151 1.00855 0.91379 1.04016 1.21965 1.00917 0.98525 0.95352 1.23453 1.00238 0.94980 1.00320 1.22651 0.94829 1.02283 1.01549 0.90350 0.91032 0.88445 0.88939 0.92618 0.98497 0.95226 0.79288 0.93715 0.86624 0.89101 0.87335 0.87048 0.87586 0.87494 0.88232 0.86056 0.87669 0.90054 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 8.50 127.77 1.09 2.33 16 2 N -0.61 -17.40 2.87 -846.73 -2.43 -19.83 16 3 C 0.12 4.47 5.52 86.38 0.48 4.95 16 4 C 0.15 6.74 6.58 86.38 0.57 7.31 16 5 N -0.74 -40.88 5.60 -343.47 -1.92 -42.80 16 6 C -0.26 -15.15 9.99 84.03 0.84 -14.31 16 7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 8 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 9 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16 10 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 C 0.51 15.63 6.88 87.66 0.60 16.23 16 15 O -0.58 -23.87 14.33 -3.01 -0.04 -23.91 16 16 C -0.03 -0.67 1.98 -11.54 -0.02 -0.69 16 17 C -0.16 -2.38 2.95 -10.79 -0.03 -2.42 16 18 C -0.17 -1.47 7.37 30.62 0.23 -1.24 16 19 C -0.16 -1.42 7.39 30.62 0.23 -1.20 16 20 C -0.15 -3.24 5.48 -10.79 -0.06 -3.29 16 21 C -0.15 -2.50 9.01 30.62 0.28 -2.23 16 22 C -0.18 -4.31 8.69 30.62 0.27 -4.05 16 23 H 0.08 1.11 7.06 -2.39 -0.02 1.09 16 24 H 0.07 1.30 8.07 -2.38 -0.02 1.28 16 25 H 0.10 1.27 4.08 -2.38 -0.01 1.26 16 26 H 0.09 3.04 8.07 -2.39 -0.02 3.02 16 27 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.38 21.55 7.67 -92.71 -0.71 20.84 16 31 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.12 1.93 7.20 -2.39 -0.02 1.91 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.76 6.62 -2.39 -0.02 0.74 16 36 H 0.11 0.87 7.96 -2.39 -0.02 0.85 16 37 H 0.11 0.77 8.13 -2.39 -0.02 0.75 16 38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 1.62 4.74 -2.39 -0.01 1.61 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.07 2.00 7.82 -2.39 -0.02 1.98 16 Total: -1.00 -75.49 330.55 3.13 -72.37 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.30 Total: 27.90 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 4.92 Total: -2.42 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.07 Total: -123.43 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -75.49 3.13 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481300630.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.928 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds