Wall clock time and date at job start Mon Mar 30 2020 01:33:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46504 * 119.99734 * 2 1
4 4 C 1.53001 * 109.47065 * 269.99450 * 3 2 1
5 5 N 1.46499 * 109.46960 * 180.02562 * 4 3 2
6 6 C 1.36939 * 119.99948 * 180.02562 * 5 4 3
7 7 H 1.08000 * 119.99668 * 359.97438 * 6 5 4
8 8 C 1.38807 * 120.00104 * 179.97438 * 6 5 4
9 9 N 1.31618 * 120.00034 * 0.02562 * 8 6 5
10 10 Si 1.86801 * 120.00040 * 179.97438 * 8 6 5
11 11 H 1.48502 * 109.47102 * 60.00417 * 10 8 6
12 12 H 1.48497 * 109.47216 * 180.02562 * 10 8 6
13 13 H 1.48500 * 109.47435 * 300.00543 * 10 8 6
14 14 C 1.34775 * 120.00241 * 179.97438 * 2 1 3
15 15 O 1.21272 * 120.00343 * 180.02562 * 14 2 1
16 16 C 1.50702 * 119.99406 * 0.02562 * 14 2 1
17 17 C 1.52991 * 109.47602 * 299.99672 * 16 14 2
18 18 C 1.53008 * 117.50031 * 106.67743 * 17 16 14
19 19 C 1.53002 * 117.50471 * 175.33761 * 17 16 14
20 20 C 1.53005 * 109.46644 * 179.97438 * 16 14 2
21 21 C 1.53003 * 117.49760 * 124.90238 * 20 16 14
22 22 C 1.52997 * 117.49756 * 56.23920 * 20 16 14
23 23 H 1.08998 * 109.47503 * 270.00207 * 1 2 3
24 24 H 1.09006 * 109.46926 * 30.00650 * 1 2 3
25 25 H 1.09004 * 109.46928 * 149.99863 * 1 2 3
26 26 H 1.08997 * 109.47074 * 29.99764 * 3 2 1
27 27 H 1.09002 * 109.46651 * 149.99978 * 3 2 1
28 28 H 1.08994 * 109.47269 * 300.00854 * 4 3 2
29 29 H 1.08996 * 109.46826 * 60.00290 * 4 3 2
30 30 H 0.96993 * 120.00316 * 359.97438 * 5 4 3
31 31 H 0.97000 * 119.99803 * 179.97438 * 9 8 6
32 32 H 1.09000 * 109.47243 * 60.00088 * 16 14 2
33 33 H 1.09000 * 115.55319 * 321.01055 * 17 16 14
34 34 H 1.08993 * 117.50082 * 215.00488 * 18 17 16
35 35 H 1.09002 * 117.49470 * 0.02582 * 18 17 16
36 36 H 1.09004 * 117.49519 * 359.97438 * 19 17 16
37 37 H 1.08990 * 117.50190 * 144.97313 * 19 17 16
38 38 H 1.09003 * 115.54822 * 270.57083 * 20 16 14
39 39 H 1.08999 * 117.50047 * 359.97438 * 21 20 16
40 40 H 1.08994 * 117.49789 * 145.01945 * 21 20 16
41 41 H 1.09003 * 117.49763 * 214.97488 * 22 20 16
42 42 H 1.08992 * 117.50009 * 359.97438 * 22 20 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4526 1.7104 -1.4425
5 7 3.1856 2.9788 -1.4425
6 6 3.5276 3.5720 -2.6284
7 1 3.2574 3.1044 -3.5637
8 6 4.2216 4.7741 -2.6284
9 7 4.5514 5.3436 -1.4886
10 14 4.6889 5.5828 -4.2462
11 1 3.4595 5.8784 -5.0250
12 1 5.4193 6.8469 -3.9748
13 1 5.5596 4.6659 -5.0248
14 6 2.1390 -1.1672 0.0005
15 8 3.3517 -1.1672 0.0010
16 6 1.3854 -2.4722 0.0005
17 6 0.5053 -2.5531 1.2494
18 6 -1.0032 -2.3780 1.0632
19 6 -0.4261 -3.7598 1.3805
20 6 2.3797 -3.6352 0.0005
21 6 2.2485 -4.6767 1.1136
22 6 3.4120 -3.6820 1.1288
23 1 -0.3634 0.0000 1.0276
24 1 -0.3633 0.8900 -0.5140
25 1 -0.3633 -0.8900 -0.5139
26 1 1.6084 2.0284 0.5138
27 1 3.1499 1.1384 0.5139
28 1 3.0416 0.9507 -1.9563
29 1 1.5002 1.8407 -1.9563
30 1 3.4279 3.3989 -0.6025
31 1 5.0367 6.1835 -1.4886
32 1 0.7591 -2.5302 -0.8897
33 1 0.9487 -2.1580 2.1634
34 1 -1.5522 -1.8678 1.8546
35 1 -1.3687 -2.2057 0.0508
36 1 -0.4122 -4.4960 0.5767
37 1 -0.5950 -4.1589 2.3805
38 1 2.6926 -3.9861 -0.9829
39 1 1.4542 -4.5333 1.8461
40 1 2.4755 -5.7128 0.8626
41 1 4.4039 -4.0642 0.8878
42 1 3.3831 -2.8841 1.8708
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001481300630.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:33:06
Heat of formation + Delta-G solvation = 17.563008 kcal
Electronic energy + Delta-G solvation = -20690.180085 eV
Core-core repulsion = 17671.956656 eV
Total energy + Delta-G solvation = -3018.223428 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-41.61260 -39.06721 -37.51626 -36.65383 -35.74762 -33.42817 -30.99889 -29.38448
-27.46244 -25.62473 -23.98138 -23.40374 -23.04976 -22.49703 -21.27094 -19.56869
-19.19166 -18.19765 -17.23451 -17.10091 -16.56240 -16.18700 -15.93811 -15.29689
-15.19791 -15.16859 -14.63961 -14.53378 -14.08865 -13.82564 -13.45678 -13.08199
-12.92564 -12.81860 -12.70506 -12.42718 -12.32012 -12.20541 -12.09650 -12.04146
-11.89096 -11.33551 -11.13878 -10.99785 -10.97441 -10.71754 -10.43552 -9.63449
-9.09554 -7.99765 -5.31164 1.44464 1.49063 1.55149 1.66284 1.97358
2.54246 2.84925 3.03481 3.33156 3.58601 3.73726 3.83493 4.00964
4.05485 4.07148 4.16051 4.22508 4.24816 4.31237 4.38923 4.44587
4.54009 4.58097 4.73778 4.84921 4.87615 4.91172 4.98351 5.00285
5.06928 5.09118 5.16594 5.28664 5.30260 5.38119 5.40260 5.40762
5.56551 6.21424 6.46813 7.24367 7.27457 7.98740 8.24655 9.23476
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.033326 B = 0.003815 C = 0.003601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.991165 B = 7337.876878 C = 7773.220433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.608 5.608
3 C 0.122 3.878
4 C 0.151 3.849
5 N -0.743 5.743
6 C -0.255 4.255
7 H 0.073 0.927
8 C -0.072 4.072
9 N -0.968 5.968
10 Si 0.979 3.021
11 H -0.272 1.272
12 H -0.290 1.290
13 H -0.280 1.280
14 C 0.506 3.494
15 O -0.578 6.578
16 C -0.033 4.033
17 C -0.164 4.164
18 C -0.167 4.167
19 C -0.157 4.157
20 C -0.149 4.149
21 C -0.154 4.154
22 C -0.176 4.176
23 H 0.078 0.922
24 H 0.071 0.929
25 H 0.097 0.903
26 H 0.092 0.908
27 H 0.055 0.945
28 H -0.003 1.003
29 H 0.030 0.970
30 H 0.375 0.625
31 H 0.254 0.746
32 H 0.116 0.884
33 H 0.091 0.909
34 H 0.108 0.892
35 H 0.111 0.889
36 H 0.106 0.894
37 H 0.107 0.893
38 H 0.100 0.900
39 H 0.122 0.878
40 H 0.105 0.895
41 H 0.081 0.919
42 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.619 -21.153 7.045 27.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 N -0.341 5.341
3 C -0.002 4.002
4 C 0.023 3.977
5 N -0.387 5.387
6 C -0.387 4.387
7 H 0.091 0.909
8 C -0.264 4.264
9 N -0.618 5.618
10 Si 0.807 3.193
11 H -0.198 1.198
12 H -0.216 1.216
13 H -0.207 1.207
14 C 0.295 3.705
15 O -0.457 6.457
16 C -0.054 4.054
17 C -0.182 4.182
18 C -0.203 4.203
19 C -0.194 4.194
20 C -0.168 4.168
21 C -0.190 4.190
22 C -0.213 4.213
23 H 0.096 0.904
24 H 0.090 0.910
25 H 0.116 0.884
26 H 0.111 0.889
27 H 0.074 0.926
28 H 0.015 0.985
29 H 0.048 0.952
30 H 0.207 0.793
31 H 0.063 0.937
32 H 0.134 0.866
33 H 0.109 0.891
34 H 0.127 0.873
35 H 0.130 0.870
36 H 0.124 0.876
37 H 0.125 0.875
38 H 0.118 0.882
39 H 0.139 0.861
40 H 0.123 0.877
41 H 0.099 0.901
42 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -15.006 -21.135 6.872 26.815
hybrid contribution 1.095 1.133 -0.555 1.671
sum -13.910 -20.002 6.317 25.169
Atomic orbital electron populations
1.22458 0.76829 1.04408 1.03475 1.47874 1.08608 1.04693 1.72884
1.21292 0.97208 0.85584 0.96076 1.20932 0.94169 0.86719 0.95885
1.42396 1.67640 1.23041 1.05607 1.19568 1.29448 1.02743 0.86915
0.90940 1.25643 1.01458 0.98739 1.00593 1.69816 1.45826 1.19926
1.26236 0.85136 0.78100 0.77304 0.78747 1.19788 1.21630 1.20655
1.21359 0.87703 0.86406 0.74991 1.90703 1.16266 1.87850 1.50891
1.20355 0.95815 0.88982 1.00212 1.21929 0.92272 1.06970 0.97046
1.23453 0.92853 0.99833 1.04194 1.23151 1.00855 0.91379 1.04016
1.21965 1.00917 0.98525 0.95352 1.23453 1.00238 0.94980 1.00320
1.22651 0.94829 1.02283 1.01549 0.90350 0.91032 0.88445 0.88939
0.92618 0.98497 0.95226 0.79288 0.93715 0.86624 0.89101 0.87335
0.87048 0.87586 0.87494 0.88232 0.86056 0.87669 0.90054 0.91156
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.25 8.50 127.77 1.09 2.33 16
2 N -0.61 -17.40 2.87 -846.73 -2.43 -19.83 16
3 C 0.12 4.47 5.52 86.38 0.48 4.95 16
4 C 0.15 6.74 6.58 86.38 0.57 7.31 16
5 N -0.74 -40.88 5.60 -343.47 -1.92 -42.80 16
6 C -0.26 -15.15 9.99 84.03 0.84 -14.31 16
7 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16
8 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16
9 N -0.97 -61.07 13.06 21.65 0.28 -60.79 16
10 Si 0.98 47.47 29.55 68.60 2.03 49.50 16
11 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16
12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16
13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
14 C 0.51 15.63 6.88 87.66 0.60 16.23 16
15 O -0.58 -23.87 14.33 -3.01 -0.04 -23.91 16
16 C -0.03 -0.67 1.98 -11.54 -0.02 -0.69 16
17 C -0.16 -2.38 2.95 -10.79 -0.03 -2.42 16
18 C -0.17 -1.47 7.37 30.62 0.23 -1.24 16
19 C -0.16 -1.42 7.39 30.62 0.23 -1.20 16
20 C -0.15 -3.24 5.48 -10.79 -0.06 -3.29 16
21 C -0.15 -2.50 9.01 30.62 0.28 -2.23 16
22 C -0.18 -4.31 8.69 30.62 0.27 -4.05 16
23 H 0.08 1.11 7.06 -2.39 -0.02 1.09 16
24 H 0.07 1.30 8.07 -2.38 -0.02 1.28 16
25 H 0.10 1.27 4.08 -2.38 -0.01 1.26 16
26 H 0.09 3.04 8.07 -2.39 -0.02 3.02 16
27 H 0.06 2.35 7.42 -2.39 -0.02 2.33 16
28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16
29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
30 H 0.38 21.55 7.67 -92.71 -0.71 20.84 16
31 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16
32 H 0.12 1.93 7.20 -2.39 -0.02 1.91 16
33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
34 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.11 0.76 6.62 -2.39 -0.02 0.74 16
36 H 0.11 0.87 7.96 -2.39 -0.02 0.85 16
37 H 0.11 0.77 8.13 -2.39 -0.02 0.75 16
38 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16
39 H 0.12 1.62 4.74 -2.39 -0.01 1.61 16
40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
41 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16
42 H 0.07 2.00 7.82 -2.39 -0.02 1.98 16
Total: -1.00 -75.49 330.55 3.13 -72.37
By element:
Atomic # 1 Polarization: 27.60 SS G_CDS: 0.30 Total: 27.90 kcal
Atomic # 6 Polarization: -7.34 SS G_CDS: 4.92 Total: -2.42 kcal
Atomic # 7 Polarization: -119.35 SS G_CDS: -4.07 Total: -123.43 kcal
Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal
Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal
Total: -75.49 3.13 -72.37 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001481300630.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.928 kcal
(2) G-P(sol) polarization free energy of solvation -75.492 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.436 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.365 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds