Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00487 * 2 1 4 4 H 1.07999 * 120.00083 * 202.84141 * 3 2 1 5 5 C 1.38813 * 119.99784 * 22.83865 * 3 2 1 6 6 N 1.31617 * 120.00413 * 13.23682 * 5 3 2 7 7 Si 1.86805 * 120.00025 * 193.23261 * 5 3 2 8 8 H 1.48508 * 109.46915 * 60.00294 * 7 5 3 9 9 H 1.48496 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47052 * 300.00428 * 7 5 3 11 11 C 1.46504 * 119.99895 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47019 * 90.00368 * 11 2 1 13 13 H 1.09002 * 110.88516 * 308.88148 * 12 11 2 14 14 C 1.55155 * 111.00716 * 72.80511 * 12 11 2 15 15 C 1.54317 * 102.94570 * 153.57742 * 14 12 11 16 16 N 1.47023 * 107.27071 * 337.81103 * 15 14 12 17 17 C 1.34777 * 125.64575 * 178.90934 * 16 15 14 18 18 O 1.21282 * 119.99526 * 180.02562 * 17 16 15 19 19 C 1.50689 * 120.00522 * 0.03568 * 17 16 15 20 20 C 1.52995 * 109.47512 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.50039 * 243.74790 * 20 19 17 22 22 C 1.52999 * 117.50115 * 175.08797 * 20 19 17 23 23 C 1.47422 * 108.70352 * 358.93742 * 16 15 14 24 24 H 1.09002 * 109.47409 * 275.13672 * 1 2 3 25 25 H 1.09008 * 109.46745 * 35.12851 * 1 2 3 26 26 H 1.09000 * 109.47187 * 155.12858 * 1 2 3 27 27 H 0.97000 * 120.00623 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47212 * 210.00187 * 11 2 1 29 29 H 1.09004 * 109.46788 * 330.00809 * 11 2 1 30 30 H 1.09009 * 110.72065 * 271.94536 * 14 12 11 31 31 H 1.08998 * 110.71819 * 35.21017 * 14 12 11 32 32 H 1.09004 * 109.88299 * 218.39350 * 15 14 12 33 33 H 1.09000 * 109.88571 * 97.22717 * 15 14 12 34 34 H 1.09006 * 109.46934 * 300.00665 * 19 17 16 35 35 H 1.09004 * 109.47049 * 59.99893 * 19 17 16 36 36 H 1.08998 * 115.54973 * 29.41544 * 20 19 17 37 37 H 1.08999 * 117.49938 * 359.97438 * 21 20 19 38 38 H 1.09003 * 117.50013 * 145.01770 * 21 20 19 39 39 H 1.08999 * 117.49804 * 214.98226 * 22 20 19 40 40 H 1.09001 * 117.49691 * 359.97417 * 22 20 19 41 41 H 1.09004 * 110.36720 * 265.29454 * 23 16 15 42 42 H 1.09001 * 110.36749 * 142.96922 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1662 1.2224 -0.3631 5 6 1.5374 2.3409 0.4666 6 7 0.4115 2.2614 1.1437 7 14 2.3113 4.0082 0.1337 8 1 2.4126 4.2230 -1.3323 9 1 1.4686 5.0736 0.7335 10 1 3.6680 4.0532 0.7355 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5294 -1.6978 -2.0212 14 6 3.5417 -0.8304 -2.1091 15 6 4.1346 -1.7678 -3.1821 16 7 3.8375 -3.1471 -2.7690 17 6 4.1702 -4.2605 -3.4518 18 8 3.8723 -5.3518 -3.0144 19 6 4.9123 -4.1495 -4.7586 20 6 5.1639 -5.5492 -5.3228 21 6 6.6180 -6.0048 -5.4599 22 6 5.8066 -5.6477 -6.7077 23 6 3.1149 -3.1107 -1.4845 24 1 -0.3634 0.0920 1.0235 25 1 -0.3633 0.8406 -0.5914 26 1 -0.3633 -0.9323 -0.4322 27 1 -0.0162 3.0685 1.4701 28 1 3.1498 -1.1383 0.5143 29 1 1.6083 -2.0282 0.5146 30 1 3.0959 0.0508 -2.5706 31 1 4.3034 -0.5436 -1.3841 32 1 5.2132 -1.6238 -3.2451 33 1 3.6741 -1.5630 -4.1486 34 1 4.3164 -3.5741 -5.4671 35 1 5.8655 -3.6472 -4.5935 36 1 4.4231 -6.3033 -5.0570 37 1 7.3955 -5.3072 -5.1485 38 1 6.8338 -7.0588 -5.2846 39 1 5.4889 -6.4667 -7.3529 40 1 6.0498 -4.7152 -7.2171 41 1 3.8114 -3.2263 -0.6540 42 1 2.3547 -3.8913 -1.4546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481474416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = 6.770580 kcal Electronic energy + Delta-G solvation = -20352.059179 eV Core-core repulsion = 17333.367756 eV Total energy + Delta-G solvation = -3018.691423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.02885 -38.00733 -36.88806 -35.32997 -32.34958 -30.70795 -29.59853 -28.81921 -25.97406 -25.33598 -23.03901 -22.59332 -21.47180 -20.80696 -19.67010 -19.01501 -17.11081 -16.82391 -16.07820 -15.96982 -15.01201 -14.56045 -14.36591 -14.29194 -13.66095 -13.41008 -13.10353 -12.92810 -12.73217 -12.45653 -12.06123 -11.85208 -11.73939 -11.61284 -11.33426 -11.06595 -10.81324 -10.68435 -10.57268 -10.42378 -10.32877 -10.21107 -10.16057 -9.84730 -9.78416 -9.71649 -8.56416 -8.49937 -6.73770 -5.72095 -3.18867 2.69609 3.05130 3.36878 3.42559 3.43369 3.60809 4.41583 4.48061 4.51373 4.70469 4.85924 4.92563 5.03844 5.17240 5.26941 5.35068 5.40032 5.41641 5.47373 5.48270 5.59488 5.66963 5.78818 5.88212 5.88758 5.98748 6.11047 6.15494 6.26983 6.34406 6.51280 6.56462 6.67765 6.77107 6.93080 7.37523 7.63653 7.73522 7.80296 8.23636 8.39911 9.23696 9.87724 10.37293 11.32723 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036415 B = 0.003648 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.720662 B = 7672.777573 C = 8201.056763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.253 4.253 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.162 3.838 12 C -0.117 4.117 13 H 0.076 0.924 14 C -0.113 4.113 15 C 0.097 3.903 16 N -0.617 5.617 17 C 0.527 3.473 18 O -0.547 6.547 19 C -0.106 4.106 20 C -0.139 4.139 21 C -0.179 4.179 22 C -0.182 4.182 23 C 0.109 3.891 24 H 0.031 0.969 25 H 0.040 0.960 26 H -0.003 1.003 27 H 0.252 0.748 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 -10.757 -12.435 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.732 3.268 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.094 0.906 14 C -0.151 4.151 15 C -0.026 4.026 16 N -0.351 5.351 17 C 0.316 3.684 18 O -0.425 6.425 19 C -0.146 4.146 20 C -0.158 4.158 21 C -0.216 4.216 22 C -0.219 4.219 23 C -0.014 4.014 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.877 -11.244 -12.149 18.784 hybrid contribution 0.383 1.134 -0.213 1.216 sum 9.260 -10.110 -12.362 18.460 Atomic orbital electron populations 1.20792 0.82713 0.95324 0.99454 1.43856 1.01754 1.00578 1.86034 1.19147 0.98135 0.85474 1.35554 0.91270 1.25031 0.97929 0.98487 0.98299 1.70058 1.19505 1.27221 1.38483 0.86380 0.78453 0.84061 0.77898 1.21121 1.21717 1.20972 1.20624 0.96367 0.88602 0.91032 1.23180 0.97558 0.91507 1.01621 0.90554 1.22587 0.98175 0.97573 0.96745 1.22198 0.99858 0.81336 0.99212 1.48632 1.56999 1.06106 1.23355 1.20199 0.79401 0.82944 0.85829 1.90672 1.55473 1.26408 1.69967 1.21191 1.01323 0.97343 0.94707 1.22066 0.97114 0.97604 0.98973 1.23038 0.94243 1.02190 1.02113 1.23008 1.04752 1.03265 0.90832 1.22344 0.95441 0.98846 0.84738 0.95116 0.94171 0.98425 0.93738 0.93178 0.94307 0.89435 0.90674 0.91878 0.91768 0.88623 0.88981 0.86431 0.88876 0.88794 0.88728 0.88778 0.91598 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.98 59.85 0.54 4.45 16 2 N -0.60 -14.41 2.91 -181.12 -0.53 -14.93 16 3 C -0.25 -6.60 9.16 -15.06 -0.14 -6.74 16 4 H 0.07 1.72 7.10 -52.49 -0.37 1.34 16 5 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -26.10 10.71 55.49 0.59 -25.51 16 7 Si 0.90 21.23 29.57 -169.99 -5.03 16.21 16 8 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 C 0.16 3.14 5.17 -4.04 -0.02 3.12 16 12 C -0.12 -1.90 3.26 -88.47 -0.29 -2.19 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C -0.11 -1.69 5.29 -24.90 -0.13 -1.82 16 15 C 0.10 1.17 6.49 -3.07 -0.02 1.15 16 16 N -0.62 -8.66 3.33 -170.52 -0.57 -9.23 16 17 C 0.53 7.54 7.85 -10.99 -0.09 7.46 16 18 O -0.55 -9.75 15.82 5.56 0.09 -9.66 16 19 C -0.11 -1.09 5.17 -27.89 -0.14 -1.23 16 20 C -0.14 -1.43 5.41 -90.62 -0.49 -1.92 16 21 C -0.18 -1.58 10.18 -26.69 -0.27 -1.85 16 22 C -0.18 -1.45 10.25 -26.69 -0.27 -1.73 16 23 C 0.11 1.64 6.38 -2.53 -0.02 1.63 16 24 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 25 H 0.04 1.04 7.34 -51.92 -0.38 0.66 16 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 0.97 7.87 -51.93 -0.41 0.57 16 29 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 30 H 0.09 1.42 8.14 -51.92 -0.42 1.00 16 31 H 0.07 1.16 7.76 -51.93 -0.40 0.75 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 36 H 0.12 1.43 7.31 -51.93 -0.38 1.06 16 37 H 0.09 0.75 8.03 -51.93 -0.42 0.33 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 42 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -30.51 338.58 -9.11 -39.62 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.34 Total: -1.86 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.43 Total: 0.26 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.50 Total: -49.67 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.51 -9.11 -39.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481474416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.391 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds