Wall clock time and date at job start Mon Mar 30 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 120.00487 * 2 1 4 4 H 1.07999 * 120.00083 * 202.84141 * 3 2 1 5 5 C 1.38813 * 119.99784 * 22.83865 * 3 2 1 6 6 N 1.31617 * 120.00413 * 13.23682 * 5 3 2 7 7 Si 1.86805 * 120.00025 * 193.23261 * 5 3 2 8 8 H 1.48508 * 109.46915 * 60.00294 * 7 5 3 9 9 H 1.48496 * 109.47027 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47052 * 300.00428 * 7 5 3 11 11 C 1.46504 * 119.99895 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47019 * 90.00368 * 11 2 1 13 13 H 1.09002 * 110.88516 * 308.88148 * 12 11 2 14 14 C 1.55155 * 111.00716 * 72.80511 * 12 11 2 15 15 C 1.54317 * 102.94570 * 153.57742 * 14 12 11 16 16 N 1.47023 * 107.27071 * 337.81103 * 15 14 12 17 17 C 1.34777 * 125.64575 * 178.90934 * 16 15 14 18 18 O 1.21282 * 119.99526 * 180.02562 * 17 16 15 19 19 C 1.50689 * 120.00522 * 0.03568 * 17 16 15 20 20 C 1.52995 * 109.47512 * 180.02562 * 19 17 16 21 21 C 1.53000 * 117.50039 * 243.74790 * 20 19 17 22 22 C 1.52999 * 117.50115 * 175.08797 * 20 19 17 23 23 C 1.47422 * 108.70352 * 358.93742 * 16 15 14 24 24 H 1.09002 * 109.47409 * 275.13672 * 1 2 3 25 25 H 1.09008 * 109.46745 * 35.12851 * 1 2 3 26 26 H 1.09000 * 109.47187 * 155.12858 * 1 2 3 27 27 H 0.97000 * 120.00623 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47212 * 210.00187 * 11 2 1 29 29 H 1.09004 * 109.46788 * 330.00809 * 11 2 1 30 30 H 1.09009 * 110.72065 * 271.94536 * 14 12 11 31 31 H 1.08998 * 110.71819 * 35.21017 * 14 12 11 32 32 H 1.09004 * 109.88299 * 218.39350 * 15 14 12 33 33 H 1.09000 * 109.88571 * 97.22717 * 15 14 12 34 34 H 1.09006 * 109.46934 * 300.00665 * 19 17 16 35 35 H 1.09004 * 109.47049 * 59.99893 * 19 17 16 36 36 H 1.08998 * 115.54973 * 29.41544 * 20 19 17 37 37 H 1.08999 * 117.49938 * 359.97438 * 21 20 19 38 38 H 1.09003 * 117.50013 * 145.01770 * 21 20 19 39 39 H 1.08999 * 117.49804 * 214.98226 * 22 20 19 40 40 H 1.09001 * 117.49691 * 359.97417 * 22 20 19 41 41 H 1.09004 * 110.36720 * 265.29454 * 23 16 15 42 42 H 1.09001 * 110.36749 * 142.96922 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1662 1.2224 -0.3631 5 6 1.5374 2.3409 0.4666 6 7 0.4115 2.2614 1.1437 7 14 2.3113 4.0082 0.1337 8 1 2.4126 4.2230 -1.3323 9 1 1.4686 5.0736 0.7335 10 1 3.6680 4.0532 0.7355 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 1 1.5294 -1.6978 -2.0212 14 6 3.5417 -0.8304 -2.1091 15 6 4.1346 -1.7678 -3.1821 16 7 3.8375 -3.1471 -2.7690 17 6 4.1702 -4.2605 -3.4518 18 8 3.8723 -5.3518 -3.0144 19 6 4.9123 -4.1495 -4.7586 20 6 5.1639 -5.5492 -5.3228 21 6 6.6180 -6.0048 -5.4599 22 6 5.8066 -5.6477 -6.7077 23 6 3.1149 -3.1107 -1.4845 24 1 -0.3634 0.0920 1.0235 25 1 -0.3633 0.8406 -0.5914 26 1 -0.3633 -0.9323 -0.4322 27 1 -0.0162 3.0685 1.4701 28 1 3.1498 -1.1383 0.5143 29 1 1.6083 -2.0282 0.5146 30 1 3.0959 0.0508 -2.5706 31 1 4.3034 -0.5436 -1.3841 32 1 5.2132 -1.6238 -3.2451 33 1 3.6741 -1.5630 -4.1486 34 1 4.3164 -3.5741 -5.4671 35 1 5.8655 -3.6472 -4.5935 36 1 4.4231 -6.3033 -5.0570 37 1 7.3955 -5.3072 -5.1485 38 1 6.8338 -7.0588 -5.2846 39 1 5.4889 -6.4667 -7.3529 40 1 6.0498 -4.7152 -7.2171 41 1 3.8114 -3.2263 -0.6540 42 1 2.3547 -3.8913 -1.4546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481474416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:09 Heat of formation + Delta-G solvation = -10.066637 kcal Electronic energy + Delta-G solvation = -20352.789296 eV Core-core repulsion = 17333.367756 eV Total energy + Delta-G solvation = -3019.421540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14412 -39.13600 -37.83309 -37.02667 -33.93658 -32.33052 -30.60319 -30.03332 -27.91303 -26.92565 -24.25606 -23.20994 -23.11223 -21.70783 -21.06366 -20.05098 -18.72859 -18.14852 -17.29114 -16.97968 -16.75344 -15.82308 -15.43760 -15.23412 -15.11041 -14.99850 -14.49956 -14.41229 -13.87587 -13.66117 -13.43891 -13.18530 -12.97709 -12.76254 -12.60341 -12.43051 -12.33260 -12.28392 -12.15003 -11.99800 -11.75797 -11.54883 -11.36736 -11.28397 -10.99342 -10.75953 -10.56010 -9.64514 -8.71811 -7.76190 -5.24796 1.50853 1.52691 1.58822 1.62586 1.99600 2.55967 2.92580 3.36746 3.43225 3.67992 3.77777 3.79118 3.97121 4.03820 4.15428 4.20450 4.36153 4.44334 4.51254 4.63198 4.65712 4.68397 4.76276 4.81841 4.86163 4.87236 4.91735 5.04158 5.07108 5.13932 5.27289 5.28983 5.32559 5.36420 5.42630 5.52161 5.70072 5.75301 6.38428 6.56554 7.14820 7.20699 7.92811 8.38378 9.27558 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036415 B = 0.003648 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.720662 B = 7672.777573 C = 8201.056763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.249 4.249 4 H 0.082 0.918 5 C -0.060 4.060 6 N -0.945 5.945 7 Si 0.965 3.035 8 H -0.275 1.275 9 H -0.302 1.302 10 H -0.275 1.275 11 C 0.161 3.839 12 C -0.105 4.105 13 H 0.065 0.935 14 C -0.111 4.111 15 C 0.104 3.896 16 N -0.619 5.619 17 C 0.521 3.479 18 O -0.591 6.591 19 C -0.095 4.095 20 C -0.162 4.162 21 C -0.182 4.182 22 C -0.163 4.163 23 C 0.115 3.885 24 H 0.002 0.998 25 H 0.015 0.985 26 H 0.026 0.974 27 H 0.245 0.755 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.372 -10.643 -14.581 21.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.380 4.380 4 H 0.100 0.900 5 C -0.254 4.254 6 N -0.592 5.592 7 Si 0.794 3.206 8 H -0.201 1.201 9 H -0.229 1.229 10 H -0.200 1.200 11 C 0.034 3.966 12 C -0.127 4.127 13 H 0.084 0.916 14 C -0.149 4.149 15 C -0.018 4.018 16 N -0.352 5.352 17 C 0.312 3.688 18 O -0.472 6.472 19 C -0.134 4.134 20 C -0.181 4.181 21 C -0.219 4.219 22 C -0.199 4.199 23 C -0.009 4.009 24 H 0.020 0.980 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.147 -11.145 -14.325 21.300 hybrid contribution -0.309 0.990 0.475 1.141 sum 10.838 -10.154 -13.850 20.308 Atomic orbital electron populations 1.20522 0.83242 0.95678 0.97485 1.44093 1.01811 1.01735 1.86152 1.19560 0.98486 0.86146 1.33762 0.90022 1.25815 0.98752 1.01937 0.98941 1.70241 1.21208 1.27392 1.40384 0.85365 0.77591 0.79702 0.77961 1.20131 1.22892 1.20036 1.20752 0.95827 0.86851 0.93128 1.22843 0.97883 0.92818 0.99170 0.91637 1.22515 0.97457 0.97518 0.97413 1.22252 1.01581 0.79211 0.98754 1.48716 1.56619 1.07076 1.22825 1.20981 0.78909 0.82103 0.86768 1.90656 1.57259 1.28055 1.71223 1.21218 1.01996 0.97766 0.92458 1.21983 0.97479 0.97212 1.01424 1.23141 0.93584 1.02447 1.02691 1.23100 1.02704 1.04207 0.89929 1.22146 0.95384 0.97417 0.85905 0.97957 0.96605 0.95512 0.94596 0.93182 0.93861 0.90619 0.91037 0.89055 0.89748 0.86635 0.86664 0.89242 0.87755 0.89026 0.88172 0.86966 0.91318 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.63 8.98 127.77 1.15 9.77 16 2 N -0.61 -29.47 2.91 -726.93 -2.11 -31.58 16 3 C -0.25 -12.86 9.16 84.03 0.77 -12.09 16 4 H 0.08 3.93 7.10 -2.91 -0.02 3.91 16 5 C -0.06 -3.28 5.10 84.86 0.43 -2.85 16 6 N -0.94 -55.59 10.71 21.65 0.23 -55.36 16 7 Si 0.97 43.63 29.57 68.60 2.03 45.65 16 8 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 9 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.16 6.13 5.17 86.38 0.45 6.58 16 12 C -0.11 -3.31 3.26 -9.40 -0.03 -3.34 16 13 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.11 -3.07 5.29 31.78 0.17 -2.90 16 15 C 0.10 2.15 6.49 86.73 0.56 2.71 16 16 N -0.62 -15.97 3.33 -811.81 -2.70 -18.67 16 17 C 0.52 13.99 7.85 87.65 0.69 14.68 16 18 O -0.59 -20.94 15.82 -3.03 -0.05 -20.99 16 19 C -0.10 -1.66 5.17 29.84 0.15 -1.51 16 20 C -0.16 -3.05 5.41 -10.80 -0.06 -3.11 16 21 C -0.18 -2.78 10.18 30.62 0.31 -2.47 16 22 C -0.16 -2.12 10.25 30.62 0.31 -1.81 16 23 C 0.11 3.33 6.38 86.86 0.55 3.88 16 24 H 0.00 0.12 7.34 -2.39 -0.02 0.10 16 25 H 0.02 0.81 7.34 -2.38 -0.02 0.80 16 26 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16 27 H 0.24 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.05 1.90 7.87 -2.39 -0.02 1.88 16 29 H 0.04 1.59 8.07 -2.39 -0.02 1.57 16 30 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.07 2.03 7.76 -2.39 -0.02 2.01 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.12 1.51 7.88 -2.38 -0.02 1.49 16 36 H 0.09 2.19 7.31 -2.39 -0.02 2.18 16 37 H 0.10 1.35 8.03 -2.39 -0.02 1.33 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.95 8.04 -2.38 -0.02 1.94 16 42 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 Total: -1.00 -66.87 338.58 3.83 -63.04 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.97 Total: 10.36 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.46 Total: 7.54 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.58 Total: -105.61 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.87 3.83 -63.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481474416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.972 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds