Wall clock time and date at job start Mon Mar 30 2020 01:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36947 * 119.99723 * 2 1 4 4 H 1.08002 * 119.99833 * 203.04490 * 3 2 1 5 5 C 1.38804 * 120.00129 * 23.04567 * 3 2 1 6 6 N 1.31623 * 120.00263 * 12.92637 * 5 3 2 7 7 Si 1.86802 * 119.99990 * 192.92706 * 5 3 2 8 8 H 1.48501 * 109.47121 * 59.99923 * 7 5 3 9 9 H 1.48500 * 109.47113 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46944 * 299.99884 * 7 5 3 11 11 C 1.46503 * 120.00415 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46979 * 89.99667 * 11 2 1 13 13 N 1.46503 * 109.46979 * 179.97438 * 12 11 2 14 14 C 1.46497 * 120.00415 * 270.00332 * 13 12 11 15 15 C 1.34774 * 119.99710 * 90.00014 * 13 12 11 16 16 O 1.21288 * 120.00011 * 0.02562 * 15 13 12 17 17 C 1.50702 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.09005 * 109.63575 * 59.57711 * 17 15 13 19 19 C 1.53024 * 109.81607 * 299.05784 * 17 15 13 20 20 C 1.50064 * 110.14518 * 190.77470 * 19 17 15 21 21 C 1.29444 * 124.07659 * 17.12689 * 20 19 17 22 22 C 1.50057 * 124.07572 * 359.53198 * 21 20 19 23 23 C 1.53026 * 110.14977 * 17.13138 * 22 21 20 24 24 H 1.08994 * 109.46912 * 275.12255 * 1 2 3 25 25 H 1.09000 * 109.47053 * 35.12342 * 1 2 3 26 26 H 1.08995 * 109.46772 * 155.12362 * 1 2 3 27 27 H 0.96994 * 120.00450 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.46463 * 330.00132 * 11 2 1 29 29 H 1.08995 * 109.47209 * 209.99916 * 11 2 1 30 30 H 1.09004 * 109.46897 * 60.00393 * 12 11 2 31 31 H 1.08995 * 109.47353 * 300.00161 * 12 11 2 32 32 H 1.09004 * 109.47123 * 270.00131 * 14 13 12 33 33 H 1.09008 * 109.47197 * 29.99864 * 14 13 12 34 34 H 1.08998 * 109.47404 * 149.99670 * 14 13 12 35 35 H 1.08999 * 109.36333 * 70.56478 * 19 17 15 36 36 H 1.08997 * 109.35404 * 310.98084 * 19 17 15 37 37 H 1.08004 * 117.96138 * 197.41225 * 20 19 17 38 38 H 1.07999 * 117.95750 * 179.51123 * 21 20 19 39 39 H 1.09001 * 109.36027 * 137.33883 * 22 21 20 40 40 H 1.08997 * 109.36024 * 257.06007 * 22 21 20 41 41 H 1.08999 * 109.63942 * 70.24761 * 23 22 21 42 42 H 1.08997 * 109.64365 * 190.66814 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1650 1.2234 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4117 2.2598 1.1458 7 14 2.3159 4.0074 0.1455 8 1 2.4196 4.2281 -1.3193 9 1 1.4736 5.0720 0.7476 10 1 3.6719 4.0476 0.7495 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1857 -2.9794 -1.4412 14 6 4.6506 -2.9788 -1.4414 15 6 2.5123 -4.1469 -1.4404 16 8 1.2994 -4.1474 -1.4407 17 6 3.2663 -5.4517 -1.4404 18 1 3.9002 -5.5084 -0.5555 19 6 4.1306 -5.5514 -2.6993 20 6 4.6775 -6.9415 -2.8420 21 6 4.2081 -7.9733 -2.2168 22 6 3.0580 -7.9217 -1.2543 23 6 2.2736 -6.6210 -1.4395 24 1 -0.3633 0.0918 1.0235 25 1 -0.3633 0.8405 -0.5913 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0154 3.0663 1.4743 28 1 1.6084 -2.0281 0.5148 29 1 3.1499 -1.1381 0.5143 30 1 3.0416 -0.9515 -1.9559 31 1 1.5002 -1.8416 -1.9555 32 1 5.0138 -2.9791 -2.4691 33 1 5.0137 -2.0883 -0.9280 34 1 5.0145 -3.8683 -0.9271 35 1 4.9565 -4.8438 -2.6276 36 1 3.5254 -5.3098 -3.5730 37 1 5.5177 -7.0897 -3.5041 38 1 4.6731 -8.9308 -2.3995 39 1 2.3981 -8.7704 -1.4341 40 1 3.4383 -7.9697 -0.2340 41 1 1.7383 -6.6479 -2.3887 42 1 1.5631 -6.5019 -0.6215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482579281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:30 Heat of formation + Delta-G solvation = -20.341432 kcal Electronic energy + Delta-G solvation = -20672.502345 eV Core-core repulsion = 17652.635256 eV Total energy + Delta-G solvation = -3019.867088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40879 -38.74632 -37.73920 -36.44700 -33.61358 -32.31847 -31.70763 -29.94727 -28.01686 -27.57535 -25.78970 -24.30663 -23.46850 -22.27087 -20.11046 -18.88483 -18.76874 -17.98887 -17.46674 -16.94747 -16.41541 -16.09386 -15.54490 -15.38633 -14.84234 -14.67202 -14.53165 -14.15611 -14.05590 -13.89042 -13.79777 -13.27070 -13.22036 -13.04876 -12.86219 -12.74781 -12.70936 -12.48009 -12.17939 -11.94866 -11.93171 -11.68480 -11.60551 -11.27931 -10.72547 -10.60252 -9.82799 -9.75037 -8.77542 -7.83264 -5.35640 1.46255 1.47283 1.51152 1.57512 1.64595 2.04452 2.52512 3.30223 3.45127 3.69909 3.77385 3.86559 4.05824 4.23277 4.31178 4.34999 4.41846 4.42580 4.50828 4.62844 4.63948 4.70420 4.75474 4.78780 4.87769 4.90146 4.98867 5.06726 5.10289 5.11433 5.26455 5.29619 5.34978 5.55569 5.59881 5.63865 5.81845 6.10111 6.29727 6.47619 7.10617 7.21430 7.80867 8.28920 9.20470 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042288 B = 0.003804 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.972152 B = 7358.293816 C = 7821.576420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.977 3.023 8 H -0.276 1.276 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.149 3.851 12 C 0.111 3.889 13 N -0.610 5.610 14 C 0.068 3.932 15 C 0.505 3.495 16 O -0.590 6.590 17 C -0.096 4.096 18 H 0.116 0.884 19 C -0.086 4.086 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.089 4.089 23 C -0.101 4.101 24 H 0.005 0.995 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.249 0.751 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.133 -19.365 -7.536 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.804 3.196 8 H -0.202 1.202 9 H -0.223 1.223 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.014 4.014 13 N -0.342 5.342 14 C -0.073 4.073 15 C 0.295 3.705 16 O -0.471 6.471 17 C -0.117 4.117 18 H 0.134 0.866 19 C -0.123 4.123 20 C -0.176 4.176 21 C -0.177 4.177 22 C -0.126 4.126 23 C -0.139 4.139 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.071 0.929 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.427 -19.226 -7.464 24.079 hybrid contribution -0.392 1.244 0.096 1.308 sum 12.035 -17.982 -7.367 22.858 Atomic orbital electron populations 1.20488 0.83160 0.95350 0.97540 1.44077 1.01941 1.01696 1.86405 1.19570 0.98819 0.86321 1.35084 0.90217 1.25933 0.98596 1.02362 0.98199 1.70260 1.21025 1.27870 1.39766 0.85205 0.77735 0.78740 0.77920 1.20223 1.22322 1.19535 1.21031 0.95525 0.86521 0.94749 1.21925 0.96318 0.84277 0.98905 1.48024 1.08608 1.05215 1.72353 1.22258 0.77071 1.04591 1.03423 1.21413 0.87675 0.86530 0.74909 1.90676 1.16449 1.88076 1.51851 1.21375 0.97974 0.90250 1.02142 0.86620 1.20627 0.99163 0.97283 0.95221 1.22094 1.00876 0.93486 1.01134 1.22245 0.97867 0.99216 0.98386 1.20496 0.95844 0.96657 0.99586 1.21399 0.96879 0.93727 1.01930 0.97697 0.96162 0.96522 0.94222 0.95882 0.92896 0.90112 0.93353 0.90222 0.90646 0.88552 0.87728 0.91818 0.85752 0.86132 0.89883 0.89743 0.92879 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.83 8.98 127.77 1.15 10.98 16 2 N -0.62 -32.93 2.92 -726.95 -2.12 -35.05 16 3 C -0.27 -14.91 9.65 84.03 0.81 -14.10 16 4 H 0.08 4.13 7.86 -2.91 -0.02 4.11 16 5 C -0.06 -3.19 5.10 84.86 0.43 -2.76 16 6 N -0.94 -57.61 10.71 21.65 0.23 -57.38 16 7 Si 0.98 45.08 29.57 68.60 2.03 47.11 16 8 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 C 0.15 6.55 5.97 86.38 0.52 7.07 16 12 C 0.11 4.15 5.73 86.38 0.50 4.65 16 13 N -0.61 -17.62 2.87 -846.74 -2.43 -20.05 16 14 C 0.07 1.23 8.82 127.77 1.13 2.36 16 15 C 0.51 15.62 7.06 87.66 0.62 16.24 16 16 O -0.59 -24.29 15.48 -3.05 -0.05 -24.34 16 17 C -0.10 -2.03 1.74 -11.40 -0.02 -2.05 16 18 H 0.12 2.00 7.37 -2.38 -0.02 1.99 16 19 C -0.09 -1.38 4.97 29.66 0.15 -1.23 16 20 C -0.16 -2.09 9.80 27.04 0.27 -1.83 16 21 C -0.16 -2.10 9.80 27.03 0.27 -1.84 16 22 C -0.09 -1.34 6.11 29.66 0.18 -1.16 16 23 C -0.10 -2.22 4.69 30.73 0.14 -2.08 16 24 H 0.00 0.28 7.34 -2.39 -0.02 0.26 16 25 H 0.02 1.14 7.34 -2.39 -0.02 1.12 16 26 H 0.02 0.82 8.03 -2.39 -0.02 0.80 16 27 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.02 1.06 8.07 -2.38 -0.02 1.04 16 29 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 30 H 0.08 2.88 8.07 -2.39 -0.02 2.87 16 31 H 0.05 2.07 7.42 -2.39 -0.02 2.06 16 32 H 0.08 1.10 7.22 -2.38 -0.02 1.08 16 33 H 0.07 1.40 8.07 -2.38 -0.02 1.39 16 34 H 0.10 1.25 5.92 -2.39 -0.01 1.23 16 35 H 0.10 1.24 5.03 -2.39 -0.01 1.23 16 36 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.12 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.12 1.17 8.06 -2.91 -0.02 1.15 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.31 8.12 -2.39 -0.02 1.29 16 42 H 0.06 1.43 7.91 -2.39 -0.02 1.41 16 Total: -1.00 -72.36 331.94 4.76 -67.60 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.97 Total: 7.87 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.13 Total: 14.25 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.33 Total: -112.48 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.36 4.76 -67.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482579281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.254 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds