Wall clock time and date at job start Mon Mar 30 2020 01:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99917 * 2 1 4 4 H 1.07998 * 120.00496 * 203.04237 * 3 2 1 5 5 C 1.38817 * 119.99927 * 23.04841 * 3 2 1 6 6 N 1.31617 * 120.00199 * 12.92590 * 5 3 2 7 7 Si 1.86797 * 119.99779 * 192.92403 * 5 3 2 8 8 H 1.48502 * 109.47171 * 60.00303 * 7 5 3 9 9 H 1.48507 * 109.47088 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47300 * 300.00010 * 7 5 3 11 11 C 1.46498 * 119.99802 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46822 * 90.00305 * 11 2 1 13 13 N 1.46508 * 109.46940 * 179.97438 * 12 11 2 14 14 C 1.46500 * 119.99826 * 269.99771 * 13 12 11 15 15 C 1.34770 * 119.99998 * 89.99600 * 13 12 11 16 16 O 1.21284 * 120.00350 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99777 * 179.97438 * 15 13 12 18 18 H 1.09006 * 109.64491 * 299.58475 * 17 15 13 19 19 C 1.53032 * 109.64286 * 60.00253 * 17 15 13 20 20 C 1.50070 * 110.14702 * 169.11877 * 19 17 15 21 21 C 1.29435 * 124.07801 * 342.86856 * 20 19 17 22 22 C 1.50074 * 124.07396 * 0.49525 * 21 20 19 23 23 C 1.53034 * 110.14147 * 342.82592 * 22 21 20 24 24 H 1.09003 * 109.47298 * 275.12253 * 1 2 3 25 25 H 1.08993 * 109.47632 * 35.12165 * 1 2 3 26 26 H 1.08999 * 109.47247 * 155.12352 * 1 2 3 27 27 H 0.97002 * 119.99920 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.47234 * 209.99958 * 11 2 1 29 29 H 1.09001 * 109.47644 * 329.99862 * 11 2 1 30 30 H 1.09000 * 109.47309 * 299.99470 * 12 11 2 31 31 H 1.08991 * 109.47505 * 59.99936 * 12 11 2 32 32 H 1.08996 * 109.47128 * 89.99422 * 14 13 12 33 33 H 1.08995 * 109.47334 * 210.00262 * 14 13 12 34 34 H 1.09004 * 109.47142 * 330.00121 * 14 13 12 35 35 H 1.08995 * 109.35613 * 289.33068 * 19 17 15 36 36 H 1.08999 * 109.35370 * 49.04917 * 19 17 15 37 37 H 1.07994 * 117.95724 * 162.84683 * 20 19 17 38 38 H 1.07997 * 117.96414 * 180.46961 * 21 20 19 39 39 H 1.09000 * 109.35890 * 103.05551 * 22 21 20 40 40 H 1.09003 * 109.35365 * 222.63951 * 22 21 20 41 41 H 1.08997 * 109.66309 * 289.78128 * 23 22 21 42 42 H 1.09002 * 109.63753 * 169.14345 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4707 6 7 0.4117 2.2597 1.1459 7 14 2.3159 4.0073 0.1457 8 1 2.4196 4.2281 -1.3191 9 1 1.4736 5.0719 0.7479 10 1 3.6719 4.0474 0.7496 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1855 -2.9795 -1.4412 14 6 4.6505 -2.9789 -1.4414 15 6 2.5121 -4.1469 -1.4405 16 8 1.2993 -4.1474 -1.4408 17 6 3.2661 -5.4516 -1.4406 18 1 3.8879 -5.5156 -2.3336 19 6 4.1481 -5.5361 -0.1928 20 6 4.6971 -6.9245 -0.0409 21 6 4.2191 -7.9637 -0.6467 22 6 3.0557 -7.9237 -1.5939 23 6 2.2736 -6.6209 -1.4131 24 1 -0.3634 0.0918 1.0236 25 1 -0.3634 0.8405 -0.5912 26 1 -0.3634 -0.9323 -0.4323 27 1 -0.0154 3.0663 1.4744 28 1 3.1499 -1.1382 0.5143 29 1 1.6084 -2.0282 0.5147 30 1 1.5001 -1.8416 -1.9556 31 1 3.0415 -0.9516 -1.9559 32 1 5.0139 -2.9781 -0.4138 33 1 5.0141 -3.8689 -1.9549 34 1 5.0134 -2.0889 -1.9557 35 1 4.9728 -4.8295 -0.2849 36 1 3.5546 -5.2862 0.6866 37 1 5.5439 -7.0652 0.6144 38 1 4.6868 -8.9189 -0.4592 39 1 3.4218 -7.9865 -2.6187 40 1 2.3984 -8.7701 -1.3947 41 1 1.7518 -6.6361 -0.4563 42 1 1.5542 -6.5099 -2.2244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482579283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:33 Heat of formation + Delta-G solvation = -0.444236 kcal Electronic energy + Delta-G solvation = -20737.667736 eV Core-core repulsion = 17718.663455 eV Total energy + Delta-G solvation = -3019.004281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27867 -37.76026 -36.01844 -34.89871 -31.93021 -31.12478 -30.83288 -28.38889 -26.58512 -25.75869 -24.26349 -23.41506 -22.24652 -20.47861 -18.91986 -18.11135 -17.01640 -16.56473 -16.25960 -15.57517 -15.10237 -14.60835 -14.22182 -13.86656 -13.54362 -13.42183 -13.37806 -12.94920 -12.84028 -12.57197 -12.28662 -12.22707 -12.22279 -11.88745 -11.25782 -11.07688 -10.86100 -10.79818 -10.77783 -10.48927 -10.47300 -10.15926 -9.87320 -9.77068 -9.40637 -9.17344 -8.64556 -8.33056 -6.67743 -5.67817 -3.15873 2.09677 2.85419 3.26426 3.40007 3.45448 3.46360 4.40210 4.51975 4.53925 4.71644 4.93970 5.06900 5.11552 5.16401 5.30776 5.37318 5.44062 5.47946 5.50030 5.66022 5.69941 5.71197 5.75809 5.82401 5.89865 6.07793 6.18854 6.22364 6.34838 6.45694 6.60715 6.72840 6.74752 6.92788 7.02349 7.45590 7.67066 7.78812 7.84656 8.41453 8.46756 9.27538 9.91228 10.41606 11.36483 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039083 B = 0.003892 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.253991 B = 7191.781675 C = 7505.418371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.259 4.259 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.092 3.908 13 N -0.611 5.611 14 C 0.077 3.923 15 C 0.512 3.488 16 O -0.538 6.538 17 C -0.105 4.105 18 H 0.095 0.905 19 C -0.093 4.093 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.092 4.092 23 C -0.100 4.100 24 H 0.030 0.970 25 H 0.040 0.960 26 H 0.001 0.999 27 H 0.253 0.747 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.996 -18.338 -5.409 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.015 3.985 12 C -0.032 4.032 13 N -0.344 5.344 14 C -0.067 4.067 15 C 0.300 3.700 16 O -0.414 6.414 17 C -0.126 4.126 18 H 0.113 0.887 19 C -0.130 4.130 20 C -0.169 4.169 21 C -0.177 4.177 22 C -0.129 4.129 23 C -0.138 4.138 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.218 -18.160 -5.316 21.048 hybrid contribution 0.597 1.015 -0.075 1.180 sum 9.815 -17.145 -5.391 20.478 Atomic orbital electron populations 1.20798 0.82417 0.95574 0.99449 1.43835 1.01970 1.00413 1.86090 1.19133 0.98244 0.85667 1.35769 0.91548 1.25038 0.97891 0.98517 0.98159 1.70075 1.19372 1.27268 1.38370 0.86336 0.78406 0.83862 0.77896 1.21098 1.21634 1.20957 1.20966 0.96096 0.88622 0.92770 1.22534 0.96724 0.82128 1.01823 1.47973 1.06724 1.06780 1.72920 1.21939 0.80286 1.02679 1.01781 1.20556 0.88007 0.85152 0.76331 1.90700 1.13927 1.87277 1.49528 1.21360 0.97926 0.93197 1.00122 0.88725 1.20682 0.99242 0.95668 0.97372 1.22024 1.00139 0.94380 1.00380 1.22076 0.98284 0.98233 0.99078 1.20498 0.95571 0.98169 0.98639 1.21424 0.96796 0.91916 1.03623 0.95142 0.94155 0.98024 0.93698 0.93740 0.94448 0.90660 0.90907 0.92324 0.91344 0.91012 0.89542 0.90189 0.87701 0.88054 0.90932 0.90835 0.91073 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.28 8.98 59.85 0.54 4.82 16 2 N -0.60 -15.79 2.92 -181.12 -0.53 -16.32 16 3 C -0.26 -7.21 9.65 -15.06 -0.15 -7.36 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.07 5.10 -17.43 -0.09 -0.02 16 6 N -0.91 -27.11 10.71 55.49 0.59 -26.51 16 7 Si 0.91 21.99 29.57 -169.99 -5.03 16.96 16 8 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.14 3.16 5.97 -4.04 -0.02 3.13 16 12 C 0.09 1.73 5.77 -4.04 -0.02 1.71 16 13 N -0.61 -9.19 2.87 -181.57 -0.52 -9.71 16 14 C 0.08 0.82 8.83 59.85 0.53 1.34 16 15 C 0.51 7.99 7.06 -10.99 -0.08 7.92 16 16 O -0.54 -10.67 15.48 5.55 0.09 -10.59 16 17 C -0.10 -1.19 1.76 -91.55 -0.16 -1.35 16 18 H 0.09 0.92 7.42 -51.93 -0.39 0.54 16 19 C -0.09 -0.92 4.93 -28.17 -0.14 -1.06 16 20 C -0.15 -1.32 9.80 -35.90 -0.35 -1.67 16 21 C -0.16 -1.34 9.80 -35.90 -0.35 -1.69 16 22 C -0.09 -0.78 6.12 -28.17 -0.17 -0.96 16 23 C -0.10 -1.12 4.70 -26.51 -0.12 -1.24 16 24 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 25 H 0.04 1.11 7.34 -51.93 -0.38 0.73 16 26 H 0.00 0.03 8.03 -51.93 -0.42 -0.39 16 27 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 29 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.07 1.58 7.42 -51.93 -0.39 1.19 16 31 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 32 H 0.06 0.58 7.21 -51.93 -0.37 0.21 16 33 H 0.07 0.56 5.90 -51.93 -0.31 0.25 16 34 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 35 H 0.09 0.74 4.92 -51.93 -0.26 0.48 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 42 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 LS Contribution 331.51 15.07 5.00 5.00 Total: -1.00 -32.62 331.51 -8.03 -40.65 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -7.03 Total: -3.05 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.59 Total: 3.58 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.46 Total: -52.55 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.62 -8.03 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482579283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.206 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds