Wall clock time and date at job start Mon Mar 30 2020 01:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99917 * 2 1 4 4 H 1.07998 * 120.00496 * 203.04237 * 3 2 1 5 5 C 1.38817 * 119.99927 * 23.04841 * 3 2 1 6 6 N 1.31617 * 120.00199 * 12.92590 * 5 3 2 7 7 Si 1.86797 * 119.99779 * 192.92403 * 5 3 2 8 8 H 1.48502 * 109.47171 * 60.00303 * 7 5 3 9 9 H 1.48507 * 109.47088 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47300 * 300.00010 * 7 5 3 11 11 C 1.46498 * 119.99802 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46822 * 90.00305 * 11 2 1 13 13 N 1.46508 * 109.46940 * 179.97438 * 12 11 2 14 14 C 1.46500 * 119.99826 * 269.99771 * 13 12 11 15 15 C 1.34770 * 119.99998 * 89.99600 * 13 12 11 16 16 O 1.21284 * 120.00350 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99777 * 179.97438 * 15 13 12 18 18 H 1.09006 * 109.64491 * 299.58475 * 17 15 13 19 19 C 1.53032 * 109.64286 * 60.00253 * 17 15 13 20 20 C 1.50070 * 110.14702 * 169.11877 * 19 17 15 21 21 C 1.29435 * 124.07801 * 342.86856 * 20 19 17 22 22 C 1.50074 * 124.07396 * 0.49525 * 21 20 19 23 23 C 1.53034 * 110.14147 * 342.82592 * 22 21 20 24 24 H 1.09003 * 109.47298 * 275.12253 * 1 2 3 25 25 H 1.08993 * 109.47632 * 35.12165 * 1 2 3 26 26 H 1.08999 * 109.47247 * 155.12352 * 1 2 3 27 27 H 0.97002 * 119.99920 * 180.02562 * 6 5 3 28 28 H 1.09002 * 109.47234 * 209.99958 * 11 2 1 29 29 H 1.09001 * 109.47644 * 329.99862 * 11 2 1 30 30 H 1.09000 * 109.47309 * 299.99470 * 12 11 2 31 31 H 1.08991 * 109.47505 * 59.99936 * 12 11 2 32 32 H 1.08996 * 109.47128 * 89.99422 * 14 13 12 33 33 H 1.08995 * 109.47334 * 210.00262 * 14 13 12 34 34 H 1.09004 * 109.47142 * 330.00121 * 14 13 12 35 35 H 1.08995 * 109.35613 * 289.33068 * 19 17 15 36 36 H 1.08999 * 109.35370 * 49.04917 * 19 17 15 37 37 H 1.07994 * 117.95724 * 162.84683 * 20 19 17 38 38 H 1.07997 * 117.96414 * 180.46961 * 21 20 19 39 39 H 1.09000 * 109.35890 * 103.05551 * 22 21 20 40 40 H 1.09003 * 109.35365 * 222.63951 * 22 21 20 41 41 H 1.08997 * 109.66309 * 289.78128 * 23 22 21 42 42 H 1.09002 * 109.63753 * 169.14345 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4707 6 7 0.4117 2.2597 1.1459 7 14 2.3159 4.0073 0.1457 8 1 2.4196 4.2281 -1.3191 9 1 1.4736 5.0719 0.7479 10 1 3.6719 4.0474 0.7496 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 7 3.1855 -2.9795 -1.4412 14 6 4.6505 -2.9789 -1.4414 15 6 2.5121 -4.1469 -1.4405 16 8 1.2993 -4.1474 -1.4408 17 6 3.2661 -5.4516 -1.4406 18 1 3.8879 -5.5156 -2.3336 19 6 4.1481 -5.5361 -0.1928 20 6 4.6971 -6.9245 -0.0409 21 6 4.2191 -7.9637 -0.6467 22 6 3.0557 -7.9237 -1.5939 23 6 2.2736 -6.6209 -1.4131 24 1 -0.3634 0.0918 1.0236 25 1 -0.3634 0.8405 -0.5912 26 1 -0.3634 -0.9323 -0.4323 27 1 -0.0154 3.0663 1.4744 28 1 3.1499 -1.1382 0.5143 29 1 1.6084 -2.0282 0.5147 30 1 1.5001 -1.8416 -1.9556 31 1 3.0415 -0.9516 -1.9559 32 1 5.0139 -2.9781 -0.4138 33 1 5.0141 -3.8689 -1.9549 34 1 5.0134 -2.0889 -1.9557 35 1 4.9728 -4.8295 -0.2849 36 1 3.5546 -5.2862 0.6866 37 1 5.5439 -7.0652 0.6144 38 1 4.6868 -8.9189 -0.4592 39 1 3.4218 -7.9865 -2.6187 40 1 2.3984 -8.7701 -1.3947 41 1 1.7518 -6.6361 -0.4563 42 1 1.5542 -6.5099 -2.2244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482579283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:32 Heat of formation + Delta-G solvation = -19.682918 kcal Electronic energy + Delta-G solvation = -20738.501987 eV Core-core repulsion = 17718.663455 eV Total energy + Delta-G solvation = -3019.838533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41732 -38.73856 -37.74307 -36.45394 -33.61275 -32.32229 -31.70685 -29.95522 -28.01566 -27.58699 -25.75725 -24.31595 -23.46933 -22.29783 -20.09781 -18.93177 -18.74029 -17.98879 -17.42912 -16.93522 -16.40019 -16.17917 -15.57549 -15.23834 -14.98377 -14.64825 -14.49030 -14.13951 -14.07601 -13.92261 -13.76399 -13.27877 -13.20890 -13.01239 -12.95187 -12.75012 -12.66877 -12.48349 -12.17023 -11.96834 -11.92814 -11.64050 -11.61507 -11.27688 -10.72155 -10.60611 -9.83255 -9.75766 -8.77588 -7.83217 -5.35506 1.46132 1.47316 1.51171 1.57527 1.63729 2.05206 2.52565 3.30295 3.45050 3.70453 3.76379 3.87553 4.05174 4.23556 4.30372 4.35032 4.41866 4.44166 4.50051 4.63059 4.63893 4.71469 4.74182 4.77636 4.88319 4.90053 4.98945 5.07122 5.10117 5.11629 5.26553 5.29539 5.35495 5.55439 5.59781 5.63860 5.81617 6.10045 6.29732 6.47247 7.10633 7.21221 7.80903 8.29092 9.20534 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039083 B = 0.003892 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.253991 B = 7191.781675 C = 7505.418371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.977 3.023 8 H -0.276 1.276 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.150 3.850 12 C 0.111 3.889 13 N -0.610 5.610 14 C 0.068 3.932 15 C 0.505 3.495 16 O -0.590 6.590 17 C -0.095 4.095 18 H 0.121 0.879 19 C -0.090 4.090 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.088 4.088 23 C -0.101 4.101 24 H 0.004 0.996 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.249 0.751 28 H 0.052 0.948 29 H 0.021 0.979 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -19.395 -6.324 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.804 3.196 8 H -0.202 1.202 9 H -0.223 1.223 10 H -0.195 1.195 11 C 0.023 3.977 12 C -0.015 4.015 13 N -0.342 5.342 14 C -0.073 4.073 15 C 0.295 3.705 16 O -0.470 6.470 17 C -0.116 4.116 18 H 0.139 0.861 19 C -0.127 4.127 20 C -0.177 4.177 21 C -0.176 4.176 22 C -0.125 4.125 23 C -0.139 4.139 24 H 0.023 0.977 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.411 -19.257 -6.245 23.746 hybrid contribution -0.385 1.261 0.221 1.337 sum 12.026 -17.995 -6.024 22.467 Atomic orbital electron populations 1.20486 0.83174 0.95340 0.97519 1.44075 1.01933 1.01706 1.86404 1.19566 0.98811 0.86309 1.35093 0.90220 1.25933 0.98588 1.02360 0.98192 1.70262 1.21034 1.27862 1.39764 0.85206 0.77733 0.78741 0.77925 1.20213 1.22320 1.19542 1.21021 0.95474 0.86481 0.94769 1.21957 0.96379 0.84220 0.98905 1.48022 1.08615 1.05229 1.72334 1.22275 0.77067 1.04795 1.03205 1.21427 0.87681 0.86547 0.74894 1.90675 1.16453 1.88079 1.51826 1.21376 0.97852 0.90250 1.02078 0.86083 1.20671 0.99099 0.97385 0.95503 1.22077 1.00926 0.93485 1.01200 1.22256 0.97789 0.99043 0.98546 1.20497 0.95606 0.96579 0.99782 1.21409 0.96933 0.93732 1.01867 0.97737 0.96143 0.96549 0.94227 0.92932 0.96005 0.93349 0.90049 0.91168 0.88149 0.90115 0.87710 0.92370 0.85976 0.86112 0.89366 0.89919 0.93281 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.86 8.98 127.77 1.15 11.00 16 2 N -0.62 -32.97 2.92 -726.94 -2.12 -35.09 16 3 C -0.27 -14.91 9.65 84.04 0.81 -14.10 16 4 H 0.08 4.13 7.86 -2.91 -0.02 4.11 16 5 C -0.06 -3.18 5.10 84.86 0.43 -2.75 16 6 N -0.94 -57.65 10.71 21.65 0.23 -57.42 16 7 Si 0.98 45.08 29.57 68.60 2.03 47.11 16 8 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 9 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 C 0.15 6.60 5.97 86.38 0.52 7.12 16 12 C 0.11 4.14 5.77 86.38 0.50 4.64 16 13 N -0.61 -17.63 2.87 -846.77 -2.43 -20.06 16 14 C 0.07 1.23 8.83 127.77 1.13 2.36 16 15 C 0.50 15.60 7.06 87.66 0.62 16.22 16 16 O -0.59 -24.27 15.48 -3.04 -0.05 -24.32 16 17 C -0.09 -1.98 1.76 -11.40 -0.02 -2.00 16 18 H 0.12 1.93 7.42 -2.38 -0.02 1.91 16 19 C -0.09 -1.58 4.93 29.66 0.15 -1.43 16 20 C -0.16 -2.29 9.80 27.05 0.27 -2.02 16 21 C -0.16 -2.16 9.80 27.05 0.27 -1.89 16 22 C -0.09 -1.29 6.12 29.66 0.18 -1.11 16 23 C -0.10 -2.21 4.70 30.74 0.14 -2.07 16 24 H 0.00 0.26 7.34 -2.39 -0.02 0.24 16 25 H 0.02 1.15 7.34 -2.39 -0.02 1.14 16 26 H 0.02 0.81 8.03 -2.39 -0.02 0.79 16 27 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.05 2.21 8.04 -2.39 -0.02 2.19 16 29 H 0.02 1.01 8.07 -2.39 -0.02 0.99 16 30 H 0.05 2.07 7.42 -2.39 -0.02 2.05 16 31 H 0.08 2.90 7.89 -2.39 -0.02 2.88 16 32 H 0.07 1.15 7.21 -2.39 -0.02 1.13 16 33 H 0.10 1.20 5.90 -2.39 -0.01 1.19 16 34 H 0.08 1.36 7.89 -2.39 -0.02 1.35 16 35 H 0.10 1.42 4.92 -2.39 -0.01 1.41 16 36 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 37 H 0.12 1.37 8.06 -2.91 -0.02 1.34 16 38 H 0.12 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 42 H 0.06 1.47 7.89 -2.39 -0.02 1.45 16 Total: -1.00 -72.49 331.51 4.77 -67.72 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.98 Total: 8.08 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.13 Total: 13.97 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.33 Total: -112.56 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.49 4.77 -67.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482579283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.042 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds