Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00228 * 2 1 4 4 H 1.08001 * 120.00151 * 203.04369 * 3 2 1 5 5 C 1.38810 * 119.99808 * 23.04695 * 3 2 1 6 6 N 1.31617 * 120.00480 * 12.92784 * 5 3 2 7 7 Si 1.86805 * 119.99863 * 192.92497 * 5 3 2 8 8 H 1.48494 * 109.46893 * 60.00185 * 7 5 3 9 9 H 1.48495 * 109.46961 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46977 * 300.00196 * 7 5 3 11 11 C 1.46507 * 119.99696 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47021 * 90.00198 * 11 2 1 13 13 N 1.46497 * 109.47145 * 180.02562 * 12 11 2 14 14 C 1.46497 * 119.99998 * 269.99473 * 13 12 11 15 15 C 1.34773 * 120.00116 * 89.99739 * 13 12 11 16 16 O 1.21282 * 120.00305 * 0.27902 * 15 13 12 17 17 C 1.50703 * 120.00015 * 180.02562 * 15 13 12 18 18 C 1.53887 * 113.58652 * 279.21576 * 17 15 13 19 19 C 1.53419 * 86.82433 * 220.45389 * 18 17 15 20 20 C 1.52465 * 128.60675 * 165.09861 * 19 18 17 21 21 C 1.52462 * 128.52210 * 245.01810 * 19 18 17 22 22 C 1.53253 * 87.72149 * 25.02048 * 19 18 17 23 23 H 1.09004 * 109.46762 * 275.12318 * 1 2 3 24 24 H 1.09001 * 109.46728 * 35.11930 * 1 2 3 25 25 H 1.08994 * 109.47489 * 155.12283 * 1 2 3 26 26 H 0.96996 * 120.00873 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47264 * 329.99965 * 11 2 1 28 28 H 1.08997 * 109.47093 * 209.99912 * 11 2 1 29 29 H 1.08997 * 109.47292 * 59.99784 * 12 11 2 30 30 H 1.09013 * 109.47159 * 299.99905 * 12 11 2 31 31 H 1.08998 * 109.47509 * 270.00259 * 14 13 12 32 32 H 1.08999 * 109.46907 * 30.00272 * 14 13 12 33 33 H 1.08997 * 109.47432 * 149.99709 * 14 13 12 34 34 H 1.08999 * 112.83274 * 50.33240 * 17 15 13 35 35 H 1.08992 * 113.65090 * 334.92543 * 18 17 15 36 36 H 1.09006 * 113.64542 * 105.93072 * 18 17 15 37 37 H 1.09000 * 117.51402 * 224.96005 * 20 19 18 38 38 H 1.08996 * 117.51267 * 10.06814 * 20 19 18 39 39 H 1.09007 * 117.51402 * 349.79843 * 21 19 18 40 40 H 1.09003 * 117.51857 * 134.86825 * 21 19 18 41 41 H 1.09003 * 113.64773 * 220.48736 * 22 19 18 42 42 H 1.08994 * 113.72798 * 89.49207 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3161 4.0073 0.1457 8 1 2.4198 4.2280 -1.3191 9 1 1.4746 5.0717 0.7488 10 1 3.6722 4.0473 0.7496 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1844 -2.9789 -1.4438 14 6 4.6494 -2.9796 -1.4437 15 6 2.5100 -4.1457 -1.4445 16 8 1.2972 -4.1452 -1.4498 17 6 3.2629 -5.4512 -1.4446 18 6 3.7669 -5.8713 -2.8366 19 6 3.3580 -7.3010 -2.4591 20 6 3.1859 -8.5127 -3.3684 21 6 4.2483 -8.5235 -2.2657 22 6 2.3493 -6.6890 -1.4811 23 1 -0.3633 0.0918 1.0236 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3634 -0.9322 -0.4323 26 1 -0.0149 3.0662 1.4751 27 1 1.6084 -2.0287 0.5129 28 1 3.1499 -1.1388 0.5133 29 1 3.0416 -0.9500 -1.9567 30 1 1.5000 -1.8399 -1.9572 31 1 5.0128 -2.9792 -2.4713 32 1 5.0130 -2.0900 -0.9294 33 1 5.0123 -3.8699 -0.9303 34 1 4.0293 -5.4975 -0.6709 35 1 3.1847 -5.4524 -3.6572 36 1 4.8413 -5.7436 -2.9695 37 1 2.3007 -9.1313 -3.2208 38 1 3.5303 -8.4221 -4.3986 39 1 5.2915 -8.4401 -2.5709 40 1 4.0623 -9.1490 -1.3926 41 1 2.2887 -7.2159 -0.5288 42 1 1.3712 -6.4976 -1.9224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482627489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = 40.305289 kcal Electronic energy + Delta-G solvation = -20420.216682 eV Core-core repulsion = 17402.979433 eV Total energy + Delta-G solvation = -3017.237249 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.51375 -38.49901 -36.01113 -34.81908 -33.74997 -31.42471 -28.71488 -26.53051 -25.93101 -25.78827 -24.88615 -22.80436 -22.50373 -20.44389 -18.80002 -18.50148 -17.07664 -16.59669 -16.00669 -15.68710 -15.34652 -14.81267 -14.63643 -14.11032 -13.59296 -13.09551 -12.99616 -12.73355 -12.55230 -12.46926 -12.24082 -12.11423 -11.84074 -11.73350 -11.62621 -11.22573 -10.82669 -10.79681 -10.53039 -10.49848 -10.46027 -10.16420 -9.90014 -9.86329 -9.77217 -9.37094 -8.63710 -8.32062 -6.67559 -5.67684 -3.15726 2.84578 3.24051 3.40040 3.45404 3.46416 3.54768 4.12018 4.35845 4.52514 4.53633 4.58613 4.66543 4.93864 5.08536 5.30538 5.36591 5.42873 5.44380 5.50370 5.54843 5.59127 5.62830 5.70834 5.77796 5.81453 5.84805 5.87374 6.05739 6.18612 6.22505 6.35615 6.61733 6.72645 6.93083 7.03435 7.45818 7.69352 7.78928 7.84829 8.42294 8.48054 9.27650 9.91336 10.41724 11.36665 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047397 B = 0.003535 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.607995 B = 7919.601726 C = 8293.807173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.092 3.908 13 N -0.610 5.610 14 C 0.080 3.920 15 C 0.517 3.483 16 O -0.539 6.539 17 C -0.130 4.130 18 C -0.079 4.079 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.152 4.152 22 C -0.076 4.076 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.001 0.999 26 H 0.253 0.747 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.747 -19.000 -7.409 22.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.323 5.323 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.015 3.985 12 C -0.033 4.033 13 N -0.343 5.343 14 C -0.064 4.064 15 C 0.305 3.695 16 O -0.416 6.416 17 C -0.151 4.151 18 C -0.117 4.117 19 C -0.163 4.163 20 C -0.203 4.203 21 C -0.189 4.189 22 C -0.114 4.114 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.969 -18.810 -7.315 22.085 hybrid contribution 0.555 1.067 -0.106 1.207 sum 9.524 -17.743 -7.422 21.461 Atomic orbital electron populations 1.20804 0.82408 0.95587 0.99463 1.43838 1.01976 1.00405 1.86094 1.19132 0.98240 0.85668 1.35764 0.91549 1.25038 0.97893 0.98520 0.98173 1.70069 1.19383 1.27283 1.38361 0.86333 0.78400 0.83860 0.77899 1.21087 1.21631 1.20968 1.20969 0.96103 0.88639 0.92767 1.22511 0.96722 0.82236 1.01793 1.47978 1.06806 1.06736 1.72774 1.21771 0.80119 1.03097 1.01401 1.20397 0.87897 0.85012 0.76241 1.90691 1.13924 1.87214 1.49756 1.22606 0.99939 0.92709 0.99890 1.22405 1.01049 0.92663 0.95560 1.22214 1.02061 0.89760 1.02236 1.22794 1.00952 1.00767 0.95822 1.22785 0.96193 0.99084 1.00818 1.22378 0.97448 0.93157 0.98369 0.95121 0.94150 0.98008 0.93690 0.94410 0.93753 0.90918 0.90648 0.92953 0.90717 0.91442 0.87027 0.89360 0.90740 0.88675 0.88764 0.88657 0.88605 0.91059 0.88263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.29 8.98 59.85 0.54 4.82 16 2 N -0.60 -15.84 2.92 -181.12 -0.53 -16.37 16 3 C -0.26 -7.23 9.65 -15.06 -0.15 -7.38 16 4 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -27.15 10.71 55.49 0.59 -26.56 16 7 Si 0.91 22.02 29.57 -169.99 -5.03 17.00 16 8 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.14 3.17 5.97 -4.04 -0.02 3.14 16 12 C 0.09 1.74 5.73 -4.04 -0.02 1.71 16 13 N -0.61 -9.29 2.87 -181.58 -0.52 -9.81 16 14 C 0.08 0.86 10.19 59.85 0.61 1.47 16 15 C 0.52 8.12 7.20 -10.99 -0.08 8.05 16 16 O -0.54 -10.76 15.48 5.56 0.09 -10.68 16 17 C -0.13 -1.46 2.93 -90.85 -0.27 -1.73 16 18 C -0.08 -0.75 7.56 -26.05 -0.20 -0.95 16 19 C -0.16 -1.49 3.09 -154.71 -0.48 -1.97 16 20 C -0.17 -1.32 10.53 -26.94 -0.28 -1.61 16 21 C -0.15 -1.12 10.53 -26.94 -0.28 -1.41 16 22 C -0.08 -0.84 7.42 -26.14 -0.19 -1.04 16 23 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 24 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 25 H 0.00 0.03 8.03 -51.93 -0.42 -0.38 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.04 0.95 8.04 -51.93 -0.42 0.53 16 29 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.08 1.59 7.42 -51.92 -0.39 1.20 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 33 H 0.07 0.58 6.25 -51.93 -0.32 0.25 16 34 H 0.11 1.06 7.02 -51.93 -0.36 0.70 16 35 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.29 7.44 -51.93 -0.39 0.90 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -32.69 342.11 -8.40 -41.09 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -7.24 Total: -2.92 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -0.92 Total: 3.10 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.46 Total: -52.74 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.69 -8.40 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482627489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.391 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds