Wall clock time and date at job start Mon Mar 30 2020 01:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36934 * 120.00228 * 2 1 4 4 H 1.08001 * 120.00151 * 203.04369 * 3 2 1 5 5 C 1.38810 * 119.99808 * 23.04695 * 3 2 1 6 6 N 1.31617 * 120.00480 * 12.92784 * 5 3 2 7 7 Si 1.86805 * 119.99863 * 192.92497 * 5 3 2 8 8 H 1.48494 * 109.46893 * 60.00185 * 7 5 3 9 9 H 1.48495 * 109.46961 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46977 * 300.00196 * 7 5 3 11 11 C 1.46507 * 119.99696 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47021 * 90.00198 * 11 2 1 13 13 N 1.46497 * 109.47145 * 180.02562 * 12 11 2 14 14 C 1.46497 * 119.99998 * 269.99473 * 13 12 11 15 15 C 1.34773 * 120.00116 * 89.99739 * 13 12 11 16 16 O 1.21282 * 120.00305 * 0.27902 * 15 13 12 17 17 C 1.50703 * 120.00015 * 180.02562 * 15 13 12 18 18 C 1.53887 * 113.58652 * 279.21576 * 17 15 13 19 19 C 1.53419 * 86.82433 * 220.45389 * 18 17 15 20 20 C 1.52465 * 128.60675 * 165.09861 * 19 18 17 21 21 C 1.52462 * 128.52210 * 245.01810 * 19 18 17 22 22 C 1.53253 * 87.72149 * 25.02048 * 19 18 17 23 23 H 1.09004 * 109.46762 * 275.12318 * 1 2 3 24 24 H 1.09001 * 109.46728 * 35.11930 * 1 2 3 25 25 H 1.08994 * 109.47489 * 155.12283 * 1 2 3 26 26 H 0.96996 * 120.00873 * 179.97438 * 6 5 3 27 27 H 1.08997 * 109.47264 * 329.99965 * 11 2 1 28 28 H 1.08997 * 109.47093 * 209.99912 * 11 2 1 29 29 H 1.08997 * 109.47292 * 59.99784 * 12 11 2 30 30 H 1.09013 * 109.47159 * 299.99905 * 12 11 2 31 31 H 1.08998 * 109.47509 * 270.00259 * 14 13 12 32 32 H 1.08999 * 109.46907 * 30.00272 * 14 13 12 33 33 H 1.08997 * 109.47432 * 149.99709 * 14 13 12 34 34 H 1.08999 * 112.83274 * 50.33240 * 17 15 13 35 35 H 1.08992 * 113.65090 * 334.92543 * 18 17 15 36 36 H 1.09006 * 113.64542 * 105.93072 * 18 17 15 37 37 H 1.09000 * 117.51402 * 224.96005 * 20 19 18 38 38 H 1.08996 * 117.51267 * 10.06814 * 20 19 18 39 39 H 1.09007 * 117.51402 * 349.79843 * 21 19 18 40 40 H 1.09003 * 117.51857 * 134.86825 * 21 19 18 41 41 H 1.09003 * 113.64773 * 220.48736 * 22 19 18 42 42 H 1.08994 * 113.72798 * 89.49207 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5388 2.3400 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3161 4.0073 0.1457 8 1 2.4198 4.2280 -1.3191 9 1 1.4746 5.0717 0.7488 10 1 3.6722 4.0473 0.7496 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 7 3.1844 -2.9789 -1.4438 14 6 4.6494 -2.9796 -1.4437 15 6 2.5100 -4.1457 -1.4445 16 8 1.2972 -4.1452 -1.4498 17 6 3.2629 -5.4512 -1.4446 18 6 3.7669 -5.8713 -2.8366 19 6 3.3580 -7.3010 -2.4591 20 6 3.1859 -8.5127 -3.3684 21 6 4.2483 -8.5235 -2.2657 22 6 2.3493 -6.6890 -1.4811 23 1 -0.3633 0.0918 1.0236 24 1 -0.3633 0.8406 -0.5912 25 1 -0.3634 -0.9322 -0.4323 26 1 -0.0149 3.0662 1.4751 27 1 1.6084 -2.0287 0.5129 28 1 3.1499 -1.1388 0.5133 29 1 3.0416 -0.9500 -1.9567 30 1 1.5000 -1.8399 -1.9572 31 1 5.0128 -2.9792 -2.4713 32 1 5.0130 -2.0900 -0.9294 33 1 5.0123 -3.8699 -0.9303 34 1 4.0293 -5.4975 -0.6709 35 1 3.1847 -5.4524 -3.6572 36 1 4.8413 -5.7436 -2.9695 37 1 2.3007 -9.1313 -3.2208 38 1 3.5303 -8.4221 -4.3986 39 1 5.2915 -8.4401 -2.5709 40 1 4.0623 -9.1490 -1.3926 41 1 2.2887 -7.2159 -0.5288 42 1 1.3712 -6.4976 -1.9224 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482627489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:16 Heat of formation + Delta-G solvation = 21.445615 kcal Electronic energy + Delta-G solvation = -20421.034499 eV Core-core repulsion = 17402.979433 eV Total energy + Delta-G solvation = -3018.055066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53837 -39.51745 -37.78139 -36.36845 -34.56312 -33.40906 -30.39428 -28.00981 -27.52327 -26.73872 -26.32326 -24.12606 -23.25138 -22.30093 -19.92041 -19.29610 -18.78047 -18.10153 -17.39865 -16.75451 -16.54523 -15.98503 -15.78720 -15.60069 -15.42366 -14.71538 -14.44141 -14.02438 -13.86424 -13.58282 -13.35463 -13.25753 -13.04028 -12.93019 -12.75639 -12.64329 -12.52741 -12.40672 -12.28312 -12.17938 -11.93461 -11.65183 -11.26275 -11.22539 -10.73326 -10.64758 -10.46236 -9.74913 -8.77714 -7.83461 -5.35750 1.47004 1.50865 1.57333 1.64121 2.06135 2.52276 2.87136 3.29971 3.40910 3.51015 3.68386 3.72273 3.84968 3.93161 4.06760 4.22892 4.34021 4.42922 4.47639 4.63865 4.75443 4.76899 4.79456 4.80803 4.84057 4.86103 4.91380 4.96302 5.03408 5.07245 5.10548 5.26869 5.28025 5.33115 5.37081 5.56197 5.60456 5.63895 6.29511 6.49850 7.10426 7.23678 7.80633 8.28801 9.20331 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.047397 B = 0.003535 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.607995 B = 7919.601726 C = 8293.807173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.268 4.268 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.977 3.023 8 H -0.276 1.276 9 H -0.297 1.297 10 H -0.270 1.270 11 C 0.150 3.850 12 C 0.111 3.889 13 N -0.610 5.610 14 C 0.073 3.927 15 C 0.510 3.490 16 O -0.593 6.593 17 C -0.122 4.122 18 C -0.070 4.070 19 C -0.172 4.172 20 C -0.171 4.171 21 C -0.134 4.134 22 C -0.085 4.085 23 H 0.005 0.995 24 H 0.020 0.980 25 H 0.016 0.984 26 H 0.249 0.751 27 H 0.023 0.977 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.139 0.861 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.059 -20.071 -8.233 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.398 4.398 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.804 3.196 8 H -0.202 1.202 9 H -0.223 1.223 10 H -0.195 1.195 11 C 0.022 3.978 12 C -0.015 4.015 13 N -0.342 5.342 14 C -0.069 4.069 15 C 0.299 3.701 16 O -0.473 6.473 17 C -0.143 4.143 18 C -0.108 4.108 19 C -0.172 4.172 20 C -0.208 4.208 21 C -0.171 4.171 22 C -0.123 4.123 23 H 0.023 0.977 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.090 0.910 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.351 -19.921 -8.158 24.818 hybrid contribution -0.487 1.304 0.159 1.401 sum 11.865 -18.617 -7.999 23.481 Atomic orbital electron populations 1.20495 0.83161 0.95349 0.97563 1.44077 1.01946 1.01702 1.86407 1.19564 0.98804 0.86324 1.35095 0.90244 1.25937 0.98601 1.02371 0.98211 1.70256 1.21035 1.27885 1.39740 0.85201 0.77734 0.78733 0.77918 1.20223 1.22288 1.19547 1.21024 0.95521 0.86514 0.94717 1.21922 0.96304 0.84356 0.98912 1.48046 1.08710 1.05192 1.72245 1.22090 0.76872 1.04573 1.03353 1.21295 0.87571 0.86429 0.74777 1.90667 1.16530 1.88042 1.52089 1.22699 1.00002 0.89534 1.02078 1.22346 1.02358 0.92461 0.93595 1.22115 1.02327 0.90277 1.02463 1.22901 1.01535 0.99833 0.96526 1.22907 0.96691 0.96977 1.00492 1.22340 0.96776 0.93916 0.99236 0.97659 0.96153 0.96535 0.94206 0.95876 0.92894 0.90215 0.93429 0.90720 0.90795 0.88478 0.84323 0.90998 0.87904 0.88810 0.87918 0.86894 0.87935 0.90497 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.85 8.98 127.77 1.15 11.00 16 2 N -0.62 -33.08 2.92 -726.93 -2.12 -35.21 16 3 C -0.27 -14.96 9.65 84.03 0.81 -14.15 16 4 H 0.08 4.14 7.86 -2.91 -0.02 4.11 16 5 C -0.06 -3.22 5.10 84.86 0.43 -2.79 16 6 N -0.94 -57.73 10.71 21.65 0.23 -57.50 16 7 Si 0.98 45.20 29.57 68.60 2.03 47.23 16 8 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 9 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 C 0.15 6.61 5.97 86.38 0.52 7.13 16 12 C 0.11 4.17 5.73 86.38 0.50 4.67 16 13 N -0.61 -17.81 2.87 -846.77 -2.43 -20.25 16 14 C 0.07 1.33 10.19 127.77 1.30 2.63 16 15 C 0.51 15.81 7.20 87.66 0.63 16.44 16 16 O -0.59 -24.58 15.48 -3.03 -0.05 -24.63 16 17 C -0.12 -2.51 2.93 -10.94 -0.03 -2.54 16 18 C -0.07 -1.14 7.56 31.03 0.23 -0.91 16 19 C -0.17 -2.74 3.09 -52.31 -0.16 -2.90 16 20 C -0.17 -2.33 10.53 30.46 0.32 -2.01 16 21 C -0.13 -1.50 10.53 30.46 0.32 -1.18 16 22 C -0.08 -1.83 7.42 30.98 0.23 -1.60 16 23 H 0.01 0.30 7.34 -2.38 -0.02 0.29 16 24 H 0.02 1.15 7.34 -2.39 -0.02 1.13 16 25 H 0.02 0.82 8.03 -2.39 -0.02 0.80 16 26 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 28 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 29 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 30 H 0.05 2.06 7.42 -2.38 -0.02 2.04 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 33 H 0.10 1.22 6.25 -2.39 -0.01 1.21 16 34 H 0.14 2.11 7.02 -2.39 -0.02 2.09 16 35 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 36 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.91 7.44 -2.39 -0.02 1.89 16 Total: -1.00 -72.88 342.11 4.88 -68.01 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.97 Total: 8.56 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.25 Total: 13.79 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.33 Total: -112.95 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.05 Total: -24.63 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.88 4.88 -68.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482627489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.453 kcal (2) G-P(sol) polarization free energy of solvation -72.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds