Wall clock time and date at job start Mon Mar 30 2020 01:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36943 * 119.99701 * 2 1 4 4 H 1.08001 * 119.99733 * 202.34501 * 3 2 1 5 5 C 1.38809 * 120.00335 * 22.34121 * 3 2 1 6 6 N 1.31626 * 119.99677 * 11.34645 * 5 3 2 7 7 Si 1.86797 * 120.00239 * 191.34621 * 5 3 2 8 8 H 1.48498 * 109.47230 * 90.00287 * 7 5 3 9 9 H 1.48499 * 109.47104 * 210.00369 * 7 5 3 10 10 H 1.48502 * 109.46911 * 329.99791 * 7 5 3 11 11 C 1.46500 * 120.00364 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46923 * 270.00189 * 11 2 1 13 13 C 1.53010 * 109.46789 * 179.97438 * 12 11 2 14 14 N 1.46498 * 109.46750 * 179.97438 * 13 12 11 15 15 C 1.46499 * 120.00076 * 90.00217 * 14 13 12 16 16 C 1.34772 * 120.00274 * 270.00175 * 14 13 12 17 17 O 1.21286 * 119.99883 * 359.97438 * 16 14 13 18 18 C 1.50698 * 120.00450 * 180.02562 * 16 14 13 19 19 H 1.09007 * 115.54880 * 34.41325 * 18 16 14 20 20 C 1.53006 * 117.50091 * 248.74726 * 18 16 14 21 21 C 1.52995 * 117.50337 * 180.08458 * 18 16 14 22 22 C 1.52992 * 138.58677 * 336.59786 * 21 18 16 23 23 C 1.52990 * 138.59112 * 238.38251 * 21 18 16 24 24 H 1.08999 * 109.47206 * 274.21007 * 1 2 3 25 25 H 1.08999 * 109.47241 * 34.21364 * 1 2 3 26 26 H 1.09004 * 109.47033 * 154.21233 * 1 2 3 27 27 H 0.96998 * 119.99968 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47111 * 150.00064 * 11 2 1 29 29 H 1.09005 * 109.46837 * 29.99874 * 11 2 1 30 30 H 1.09004 * 109.47343 * 59.99960 * 12 11 2 31 31 H 1.08993 * 109.47289 * 299.99872 * 12 11 2 32 32 H 1.08995 * 109.47100 * 299.99688 * 13 12 11 33 33 H 1.08994 * 109.46913 * 60.00077 * 13 12 11 34 34 H 1.09003 * 109.46949 * 89.99272 * 15 14 13 35 35 H 1.08998 * 109.47868 * 209.99579 * 15 14 13 36 36 H 1.09004 * 109.46846 * 330.00147 * 15 14 13 37 37 H 1.08999 * 117.49439 * 359.97438 * 20 18 16 38 38 H 1.08993 * 117.50193 * 144.99409 * 20 18 16 39 39 H 1.09001 * 117.49769 * 336.59659 * 22 21 18 40 40 H 1.09005 * 117.49659 * 121.61368 * 22 21 18 41 41 H 1.09003 * 117.49927 * 238.38049 * 23 21 18 42 42 H 1.09002 * 117.49633 * 23.37653 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3430 0.4569 6 7 0.3840 2.2691 1.0934 7 14 2.3366 4.0048 0.1686 8 1 1.8678 4.5632 -1.1251 9 1 1.9680 4.9304 1.2698 10 1 3.8122 3.8420 0.1319 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2171 -3.0351 1.4438 14 7 3.4618 -3.4570 2.8252 15 6 2.4852 -4.3020 3.5170 16 6 4.5853 -3.0679 3.4598 17 8 5.3941 -2.3687 2.8870 18 6 4.8373 -3.5023 4.8806 19 1 4.4750 -4.4974 5.1392 20 6 4.7856 -2.4271 5.9680 21 6 6.1298 -3.0260 5.5464 22 6 7.5224 -2.5443 5.1350 23 6 7.3729 -3.6303 6.2023 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4471 27 1 -0.0462 3.0775 1.4131 28 1 3.1499 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5129 30 1 1.5001 -1.8398 1.9572 31 1 3.0415 -0.9498 1.9568 32 1 2.6277 -3.7947 0.9305 33 1 4.1695 -2.9053 0.9299 34 1 2.7269 -5.3510 3.3462 35 1 2.5151 -4.0915 4.5860 36 1 1.4868 -4.0921 3.1331 37 1 4.5697 -1.4054 5.6555 38 1 4.3894 -2.7147 6.9418 39 1 7.8911 -2.8487 4.1554 40 1 7.8299 -1.5523 5.4660 41 1 7.5821 -3.3528 7.2354 42 1 7.6430 -4.6493 5.9252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484758033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:42 Heat of formation + Delta-G solvation = 49.251838 kcal Electronic energy + Delta-G solvation = -20364.352657 eV Core-core repulsion = 17347.503360 eV Total energy + Delta-G solvation = -3016.849298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03682 -37.71479 -36.06154 -35.17037 -32.88383 -32.01517 -30.12064 -26.87795 -26.04010 -25.62627 -23.52694 -22.48250 -21.78236 -20.18064 -19.79300 -18.44110 -17.14463 -16.60758 -15.95512 -15.26049 -15.05923 -14.87218 -14.60839 -14.22431 -13.77724 -13.29118 -13.03461 -12.87139 -12.54966 -12.47155 -12.24790 -11.78803 -11.57234 -11.44130 -11.25349 -10.90364 -10.77382 -10.61471 -10.37376 -10.29549 -10.18107 -10.07159 -9.99957 -9.83767 -9.64514 -9.49347 -8.51478 -8.42113 -6.66920 -5.64617 -3.09403 2.61308 3.02656 3.44348 3.50004 3.52503 3.63728 3.71881 4.19254 4.57420 4.59188 4.69289 4.93005 5.12179 5.31095 5.32771 5.39978 5.47976 5.49507 5.51604 5.55486 5.58734 5.59944 5.67272 5.86595 5.89134 5.90705 6.08544 6.15304 6.19019 6.30971 6.53753 6.75238 6.83366 6.97215 7.22462 7.45035 7.54847 7.79493 7.89462 8.38433 8.49055 9.33017 9.96194 10.44692 11.40977 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.004512 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.062488 B = 6204.683672 C = 7038.757402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.603 5.603 3 C -0.249 4.249 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.912 5.912 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.116 3.884 14 N -0.613 5.613 15 C 0.080 3.920 16 C 0.538 3.462 17 O -0.528 6.528 18 C -0.140 4.140 19 H 0.121 0.879 20 C -0.101 4.101 21 C -0.202 4.202 22 C -0.113 4.113 23 C -0.131 4.131 24 H 0.026 0.974 25 H 0.044 0.956 26 H -0.005 1.005 27 H 0.251 0.749 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.848 -15.919 9.469 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.326 5.326 3 C -0.379 4.379 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.558 5.558 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.006 4.006 14 N -0.346 5.346 15 C -0.064 4.064 16 C 0.325 3.675 17 O -0.404 6.404 18 C -0.161 4.161 19 H 0.139 0.861 20 C -0.138 4.138 21 C -0.202 4.202 22 C -0.150 4.150 23 C -0.168 4.168 24 H 0.044 0.956 25 H 0.063 0.937 26 H 0.013 0.987 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.152 -15.402 9.187 19.307 hybrid contribution 0.065 0.847 0.081 0.853 sum 7.217 -14.555 9.268 18.704 Atomic orbital electron populations 1.20776 0.82616 0.95430 0.99115 1.43985 1.01901 1.00779 1.85922 1.19264 0.97900 0.85427 1.35302 0.91358 1.25010 0.97761 0.98483 0.98556 1.70072 1.18000 1.26875 1.40818 0.86249 0.78943 0.84139 0.77260 1.21534 1.21784 1.20455 1.20739 0.95669 0.88096 0.92710 1.22605 0.99324 0.95185 1.01910 1.21632 1.01161 0.97080 0.80742 1.47862 1.20459 1.51390 1.14920 1.21767 0.93057 0.93828 0.97732 1.19661 0.81102 0.79883 0.86855 1.90710 1.45532 1.36931 1.67226 1.21998 1.01336 1.00551 0.92192 0.86096 1.22689 0.96079 0.97812 0.97203 1.21157 0.85661 1.07293 1.06128 1.22586 0.94579 0.98583 0.99215 1.22748 0.97260 0.98598 0.98180 0.95582 0.93730 0.98654 0.93912 0.93823 0.94643 0.92913 0.91601 0.91189 0.90281 0.92966 0.91126 0.90756 0.87813 0.87678 0.88217 0.88513 0.88460 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.22 9.01 59.85 0.54 4.76 16 2 N -0.60 -15.93 2.93 -181.12 -0.53 -16.46 16 3 C -0.25 -7.22 9.67 -15.06 -0.15 -7.36 16 4 H 0.07 1.96 7.84 -52.49 -0.41 1.55 16 5 C 0.00 -0.02 5.13 -17.43 -0.09 -0.10 16 6 N -0.91 -27.50 10.59 55.49 0.59 -26.91 16 7 Si 0.90 22.85 29.57 -169.99 -5.03 17.82 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.16 3.34 5.71 -4.04 -0.02 3.32 16 12 C -0.15 -2.96 5.86 -26.73 -0.16 -3.11 16 13 C 0.12 1.84 5.41 -4.04 -0.02 1.82 16 14 N -0.61 -8.85 2.87 -181.57 -0.52 -9.37 16 15 C 0.08 0.80 10.01 59.85 0.60 1.40 16 16 C 0.54 8.60 7.46 -10.99 -0.08 8.52 16 17 O -0.53 -10.62 15.82 5.55 0.09 -10.53 16 18 C -0.14 -1.70 4.79 -91.77 -0.44 -2.14 16 19 H 0.12 1.14 7.27 -51.92 -0.38 0.76 16 20 C -0.10 -1.15 10.24 -26.69 -0.27 -1.43 16 21 C -0.20 -2.42 5.06 -154.48 -0.78 -3.21 16 22 C -0.11 -1.33 10.16 -26.74 -0.27 -1.61 16 23 C -0.13 -1.23 10.53 -26.74 -0.28 -1.51 16 24 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 25 H 0.04 1.22 7.19 -51.93 -0.37 0.84 16 26 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 27 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.04 0.94 8.03 -51.93 -0.42 0.52 16 29 H 0.04 0.67 7.86 -51.93 -0.41 0.26 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 32 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.62 6.64 -51.93 -0.35 0.27 16 36 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 347.39 15.07 5.24 5.24 Total: -1.00 -34.10 347.39 -8.88 -42.98 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.29 Total: -2.12 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.43 Total: -0.65 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.46 Total: -52.74 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.10 -8.88 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484758033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.233 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds