Wall clock time and date at job start Mon Mar 30 2020 01:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36943 * 119.99701 * 2 1 4 4 H 1.08001 * 119.99733 * 202.34501 * 3 2 1 5 5 C 1.38809 * 120.00335 * 22.34121 * 3 2 1 6 6 N 1.31626 * 119.99677 * 11.34645 * 5 3 2 7 7 Si 1.86797 * 120.00239 * 191.34621 * 5 3 2 8 8 H 1.48498 * 109.47230 * 90.00287 * 7 5 3 9 9 H 1.48499 * 109.47104 * 210.00369 * 7 5 3 10 10 H 1.48502 * 109.46911 * 329.99791 * 7 5 3 11 11 C 1.46500 * 120.00364 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46923 * 270.00189 * 11 2 1 13 13 C 1.53010 * 109.46789 * 179.97438 * 12 11 2 14 14 N 1.46498 * 109.46750 * 179.97438 * 13 12 11 15 15 C 1.46499 * 120.00076 * 90.00217 * 14 13 12 16 16 C 1.34772 * 120.00274 * 270.00175 * 14 13 12 17 17 O 1.21286 * 119.99883 * 359.97438 * 16 14 13 18 18 C 1.50698 * 120.00450 * 180.02562 * 16 14 13 19 19 H 1.09007 * 115.54880 * 34.41325 * 18 16 14 20 20 C 1.53006 * 117.50091 * 248.74726 * 18 16 14 21 21 C 1.52995 * 117.50337 * 180.08458 * 18 16 14 22 22 C 1.52992 * 138.58677 * 336.59786 * 21 18 16 23 23 C 1.52990 * 138.59112 * 238.38251 * 21 18 16 24 24 H 1.08999 * 109.47206 * 274.21007 * 1 2 3 25 25 H 1.08999 * 109.47241 * 34.21364 * 1 2 3 26 26 H 1.09004 * 109.47033 * 154.21233 * 1 2 3 27 27 H 0.96998 * 119.99968 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47111 * 150.00064 * 11 2 1 29 29 H 1.09005 * 109.46837 * 29.99874 * 11 2 1 30 30 H 1.09004 * 109.47343 * 59.99960 * 12 11 2 31 31 H 1.08993 * 109.47289 * 299.99872 * 12 11 2 32 32 H 1.08995 * 109.47100 * 299.99688 * 13 12 11 33 33 H 1.08994 * 109.46913 * 60.00077 * 13 12 11 34 34 H 1.09003 * 109.46949 * 89.99272 * 15 14 13 35 35 H 1.08998 * 109.47868 * 209.99579 * 15 14 13 36 36 H 1.09004 * 109.46846 * 330.00147 * 15 14 13 37 37 H 1.08999 * 117.49439 * 359.97438 * 20 18 16 38 38 H 1.08993 * 117.50193 * 144.99409 * 20 18 16 39 39 H 1.09001 * 117.49769 * 336.59659 * 22 21 18 40 40 H 1.09005 * 117.49659 * 121.61368 * 22 21 18 41 41 H 1.09003 * 117.49927 * 238.38049 * 23 21 18 42 42 H 1.09002 * 117.49633 * 23.37653 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3430 0.4569 6 7 0.3840 2.2691 1.0934 7 14 2.3366 4.0048 0.1686 8 1 1.8678 4.5632 -1.1251 9 1 1.9680 4.9304 1.2698 10 1 3.8122 3.8420 0.1319 11 6 2.1976 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4433 13 6 3.2171 -3.0351 1.4438 14 7 3.4618 -3.4570 2.8252 15 6 2.4852 -4.3020 3.5170 16 6 4.5853 -3.0679 3.4598 17 8 5.3941 -2.3687 2.8870 18 6 4.8373 -3.5023 4.8806 19 1 4.4750 -4.4974 5.1392 20 6 4.7856 -2.4271 5.9680 21 6 6.1298 -3.0260 5.5464 22 6 7.5224 -2.5443 5.1350 23 6 7.3729 -3.6303 6.2023 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8498 -0.5778 26 1 -0.3633 -0.9254 -0.4471 27 1 -0.0462 3.0775 1.4131 28 1 3.1499 -1.1385 -0.5133 29 1 1.6085 -2.0286 -0.5129 30 1 1.5001 -1.8398 1.9572 31 1 3.0415 -0.9498 1.9568 32 1 2.6277 -3.7947 0.9305 33 1 4.1695 -2.9053 0.9299 34 1 2.7269 -5.3510 3.3462 35 1 2.5151 -4.0915 4.5860 36 1 1.4868 -4.0921 3.1331 37 1 4.5697 -1.4054 5.6555 38 1 4.3894 -2.7147 6.9418 39 1 7.8911 -2.8487 4.1554 40 1 7.8299 -1.5523 5.4660 41 1 7.5821 -3.3528 7.2354 42 1 7.6430 -4.6493 5.9252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484758033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:41 Heat of formation + Delta-G solvation = 28.935354 kcal Electronic energy + Delta-G solvation = -20365.233646 eV Core-core repulsion = 17347.503360 eV Total energy + Delta-G solvation = -3017.730286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18228 -38.72894 -37.81493 -36.63250 -34.22693 -33.48218 -31.93454 -28.14937 -27.85815 -27.19963 -24.97646 -23.30362 -23.26185 -21.98960 -20.82300 -19.49400 -18.81901 -18.19325 -17.22783 -16.69790 -16.41504 -15.93100 -15.87154 -15.67521 -15.49170 -14.82007 -14.63368 -14.46628 -13.98049 -13.47344 -13.34814 -13.10290 -13.06086 -12.78239 -12.66740 -12.63183 -12.45028 -12.37264 -12.24669 -12.05496 -11.93087 -11.43731 -11.19346 -11.07032 -10.94989 -10.72340 -10.66003 -9.67631 -8.79959 -7.86793 -5.33974 1.41237 1.42226 1.45750 1.51512 1.96184 2.47773 2.72561 2.81234 3.26791 3.32114 3.61915 3.70249 3.80858 4.00918 4.10700 4.30277 4.37004 4.46218 4.52274 4.56195 4.64130 4.72456 4.73754 4.74404 4.74816 4.77642 4.86017 4.89882 4.94036 4.98680 5.00731 5.25457 5.26676 5.31195 5.41870 5.59971 5.61962 5.71680 6.30875 6.41993 7.13373 7.19547 7.86118 8.27149 9.16759 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.004512 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.062488 B = 6204.683672 C = 7038.757402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.622 5.622 3 C -0.264 4.264 4 H 0.062 0.938 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.280 1.280 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.152 3.848 12 C -0.128 4.128 13 C 0.125 3.875 14 N -0.614 5.614 15 C 0.072 3.928 16 C 0.524 3.476 17 O -0.585 6.585 18 C -0.138 4.138 19 H 0.158 0.842 20 C -0.096 4.096 21 C -0.226 4.226 22 C -0.141 4.141 23 C -0.093 4.093 24 H 0.001 0.999 25 H 0.017 0.983 26 H 0.036 0.964 27 H 0.248 0.752 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.012 0.988 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.721 -18.296 10.530 22.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.345 5.345 3 C -0.395 4.395 4 H 0.080 0.920 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.794 3.206 8 H -0.206 1.206 9 H -0.218 1.218 10 H -0.201 1.201 11 C 0.026 3.974 12 C -0.170 4.170 13 C 0.002 3.998 14 N -0.346 5.346 15 C -0.070 4.070 16 C 0.313 3.687 17 O -0.465 6.465 18 C -0.158 4.158 19 H 0.175 0.825 20 C -0.133 4.133 21 C -0.227 4.227 22 C -0.178 4.178 23 C -0.130 4.130 24 H 0.019 0.981 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.159 0.841 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.138 0.862 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.009 -17.833 10.254 21.732 hybrid contribution 0.107 1.541 -0.286 1.571 sum 7.117 -16.292 9.968 20.382 Atomic orbital electron populations 1.20550 0.82339 0.96260 0.97463 1.44249 1.02443 1.01719 1.86120 1.19516 0.97885 0.87023 1.35063 0.92016 1.25753 0.98514 1.01743 0.98707 1.70227 1.19142 1.27405 1.41745 0.85280 0.78126 0.79946 0.77229 1.20605 1.21759 1.20071 1.20923 0.95591 0.87103 0.93826 1.22290 0.98659 0.96010 0.99994 1.21425 1.00172 0.95893 0.82297 1.48000 1.20875 1.51241 1.14488 1.22090 0.91999 0.94584 0.98303 1.20480 0.80831 0.79025 0.88334 1.90680 1.47525 1.39482 1.68774 1.22050 1.01980 1.02186 0.89630 0.82457 1.22726 0.96082 0.96156 0.98352 1.21444 0.86005 1.08295 1.06958 1.22593 0.95619 0.99863 0.99712 1.22859 0.93583 0.98264 0.98264 0.98083 0.96408 0.94576 0.94254 0.94365 0.90970 0.93246 0.96879 0.87199 0.92081 0.89935 0.89525 0.90346 0.90857 0.84150 0.90149 0.88787 0.86198 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.13 9.01 127.77 1.15 10.28 16 2 N -0.62 -33.15 2.93 -726.93 -2.13 -35.27 16 3 C -0.26 -15.66 9.67 84.03 0.81 -14.85 16 4 H 0.06 3.65 7.84 -2.91 -0.02 3.63 16 5 C -0.05 -3.11 5.13 84.86 0.44 -2.67 16 6 N -0.94 -57.84 10.59 21.65 0.23 -57.61 16 7 Si 0.97 47.85 29.57 68.60 2.03 49.88 16 8 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 9 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 C 0.15 6.46 5.71 86.38 0.49 6.95 16 12 C -0.13 -5.14 5.86 30.60 0.18 -4.96 16 13 C 0.13 3.84 5.41 86.38 0.47 4.31 16 14 N -0.61 -16.94 2.87 -846.75 -2.43 -19.38 16 15 C 0.07 1.21 10.01 127.77 1.28 2.49 16 16 C 0.52 16.78 7.46 87.66 0.65 17.43 16 17 O -0.58 -24.72 15.82 -3.05 -0.05 -24.77 16 18 C -0.14 -3.12 4.79 -11.54 -0.06 -3.18 16 19 H 0.16 2.35 7.27 -2.38 -0.02 2.33 16 20 C -0.10 -2.08 10.24 30.62 0.31 -1.77 16 21 C -0.23 -5.17 5.06 -52.16 -0.26 -5.44 16 22 C -0.14 -3.38 10.16 30.59 0.31 -3.07 16 23 C -0.09 -1.51 10.53 30.59 0.32 -1.18 16 24 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 25 H 0.02 0.96 7.19 -2.39 -0.02 0.95 16 26 H 0.04 1.52 7.84 -2.39 -0.02 1.50 16 27 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 29 H 0.07 2.54 7.86 -2.38 -0.02 2.52 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 2.52 8.07 -2.39 -0.02 2.50 16 33 H 0.06 2.11 7.42 -2.39 -0.02 2.09 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.20 6.64 -2.39 -0.02 1.19 16 36 H 0.08 1.29 8.07 -2.38 -0.02 1.27 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -78.10 347.39 4.72 -73.38 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.97 Total: 9.43 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.10 Total: 4.34 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.33 Total: -112.26 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -78.10 4.72 -73.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484758033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.314 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds