Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00037 * 2 1 4 4 C 1.53002 * 109.47289 * 124.99643 * 3 2 1 5 5 C 1.53001 * 109.47106 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47378 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99550 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00348 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99621 * 0.02562 * 8 6 5 10 10 C 1.46498 * 120.00351 * 180.02562 * 8 6 5 11 11 C 1.53004 * 109.46933 * 264.36694 * 10 8 6 12 12 H 1.08991 * 112.78006 * 316.23261 * 11 10 8 13 13 C 1.53754 * 113.55238 * 87.09230 * 11 10 8 14 14 C 1.53496 * 83.25808 * 140.98316 * 13 11 10 15 15 N 1.47069 * 87.98784 * 333.76422 * 14 13 11 16 16 C 1.36934 * 136.05813 * 207.08833 * 15 14 13 17 17 H 1.08009 * 119.99607 * 172.13701 * 16 15 14 18 18 C 1.38807 * 120.00007 * 351.85766 * 16 15 14 19 19 N 1.31613 * 120.00127 * 0.27757 * 18 16 15 20 20 Si 1.86802 * 119.99886 * 180.27667 * 18 16 15 21 21 H 1.48500 * 109.47157 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47268 * 120.00155 * 20 18 16 23 23 H 1.48497 * 109.47252 * 240.00260 * 20 18 16 24 24 H 1.07998 * 120.00314 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99770 * 179.97438 * 1 2 3 26 26 H 1.08007 * 120.00191 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47326 * 4.99314 * 3 2 1 28 28 H 1.09005 * 109.46994 * 244.99349 * 3 2 1 29 29 H 1.08998 * 109.47205 * 59.99596 * 4 3 2 30 30 H 1.09005 * 109.46862 * 299.99787 * 4 3 2 31 31 H 1.09003 * 109.46841 * 59.99928 * 5 4 3 32 32 H 1.08997 * 109.47021 * 300.00046 * 5 4 3 33 33 H 1.09003 * 109.46576 * 270.21896 * 9 8 6 34 34 H 1.08998 * 109.47217 * 30.21266 * 9 8 6 35 35 H 1.08998 * 109.47183 * 150.22079 * 9 8 6 36 36 H 1.08993 * 109.47200 * 144.36309 * 10 8 6 37 37 H 1.09004 * 109.47038 * 24.36247 * 10 8 6 38 38 H 1.09002 * 114.39426 * 27.42443 * 13 11 10 39 39 H 1.08999 * 114.26870 * 254.53490 * 13 11 10 40 40 H 1.09002 * 113.46916 * 218.98183 * 14 13 11 41 41 H 1.09005 * 113.52179 * 88.54961 * 14 13 11 42 42 H 0.97005 * 120.00306 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7568 2.6859 2.3455 7 8 4.8203 1.7392 3.1009 8 7 5.5423 3.7624 2.5467 9 6 5.4659 4.9057 1.6338 10 6 6.4725 3.7894 3.6781 11 6 5.8216 4.5169 4.8562 12 1 5.3045 5.4282 4.5559 13 6 4.9741 3.5992 5.7527 14 6 5.5797 4.4446 6.8817 15 7 6.7269 4.7070 5.9996 16 6 8.0530 5.0036 6.1686 17 1 8.7144 5.0257 5.3150 18 6 8.5460 5.2816 7.4361 19 7 7.7399 5.2548 8.4762 20 14 10.3534 5.6938 7.6655 21 1 11.0402 5.6583 6.3493 22 1 10.4808 7.0516 8.2532 23 1 10.9761 4.6999 8.5762 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0894 28 1 2.6214 1.4025 -0.9314 29 1 3.7398 0.5066 1.0922 30 1 2.4771 1.2357 2.1131 31 1 3.0957 3.4847 1.2705 32 1 4.3582 2.7549 0.2499 33 1 6.1731 4.7656 0.8162 34 1 4.4559 4.9825 1.2314 35 1 5.7121 5.8195 2.1746 36 1 7.3837 4.3118 3.3870 37 1 6.7170 2.7685 3.9719 38 1 5.2907 2.5562 5.7563 39 1 3.8981 3.7224 5.6300 40 1 5.8373 3.8648 7.7680 41 1 4.9994 5.3371 7.1161 42 1 8.0845 5.4487 9.3620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488656467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = 31.387119 kcal Electronic energy + Delta-G solvation = -20233.064906 eV Core-core repulsion = 17215.440936 eV Total energy + Delta-G solvation = -3017.623970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80900 -37.92399 -36.16165 -35.13211 -32.56880 -32.12129 -28.93317 -27.83984 -27.19861 -25.94066 -23.36043 -22.76376 -21.41479 -20.08619 -19.13893 -18.77781 -16.95321 -16.52116 -16.11700 -15.91661 -15.22758 -14.85973 -14.37338 -14.03316 -13.74217 -13.42717 -13.33264 -12.99649 -12.64509 -12.42216 -12.16483 -12.02145 -11.73729 -11.63069 -11.43054 -11.08168 -11.03965 -10.85481 -10.77195 -10.73572 -10.34874 -9.82996 -9.74264 -9.62106 -9.52186 -9.30255 -8.76158 -8.21581 -6.81768 -5.74450 -3.06366 2.05998 2.87748 3.24589 3.40176 3.45022 3.47864 4.46956 4.54307 4.64534 4.79373 5.01801 5.10674 5.12307 5.27476 5.32403 5.38228 5.44189 5.50384 5.52559 5.58958 5.65678 5.72099 5.73171 5.96557 6.01074 6.07271 6.14762 6.22357 6.40911 6.46191 6.54932 6.58278 6.72747 6.81904 6.89396 7.30556 7.51332 7.62321 7.66643 8.01446 8.44675 9.06496 9.73482 10.70478 11.44053 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039379 B = 0.003487 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.861192 B = 8027.976187 C = 8357.763718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.139 4.139 6 C 0.508 3.492 7 O -0.535 6.535 8 N -0.613 5.613 9 C 0.078 3.922 10 C 0.114 3.886 11 C 0.130 3.870 12 H 0.039 0.961 13 C -0.157 4.157 14 C 0.157 3.843 15 N -0.601 5.601 16 C -0.218 4.218 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.917 5.917 20 Si 0.910 3.090 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.252 -4.352 -18.365 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.179 4.179 6 C 0.295 3.705 7 O -0.412 6.412 8 N -0.347 5.347 9 C -0.065 4.065 10 C -0.009 4.009 11 C 0.022 3.978 12 H 0.056 0.944 13 C -0.196 4.196 14 C 0.032 3.968 15 N -0.327 5.327 16 C -0.345 4.345 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.564 5.564 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.043 0.957 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.882 -4.754 -17.756 21.361 hybrid contribution 0.973 0.640 0.172 1.178 sum -9.908 -4.114 -17.584 20.598 Atomic orbital electron populations 1.23838 0.95993 1.01741 1.02076 1.22980 0.96025 0.98670 0.99057 1.20809 0.98226 0.95393 0.98840 1.21291 0.97649 0.96412 0.98465 1.21713 0.98266 1.00266 0.97618 1.20627 0.81171 0.82239 0.86415 1.90704 1.67767 1.35255 1.47427 1.47921 1.40672 1.17132 1.28963 1.21768 1.01675 0.89554 0.93521 1.21865 0.91051 1.02759 0.85235 1.22472 0.91079 0.94831 0.89414 0.94376 1.23683 0.96961 0.99353 0.99560 1.21941 0.86222 0.94497 0.94171 1.45679 1.03616 1.82537 1.00892 1.18927 0.81702 1.40429 0.93458 0.90233 1.24846 0.98024 1.01825 0.95726 1.69864 1.33651 1.54600 0.98295 0.86077 0.84484 0.77723 0.77673 1.20452 1.21769 1.21691 0.88664 0.88670 0.87387 0.91510 0.91031 0.91090 0.90954 0.89151 0.89291 0.92887 0.91360 0.90763 0.91192 0.89391 0.90074 0.93330 0.92020 0.95746 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 14.32 29.02 0.42 -1.13 16 2 C -0.15 -1.24 9.52 -36.02 -0.34 -1.58 16 3 C -0.10 -0.75 5.66 -27.88 -0.16 -0.91 16 4 C -0.10 -1.02 4.49 -26.73 -0.12 -1.14 16 5 C -0.14 -1.37 4.26 -27.88 -0.12 -1.49 16 6 C 0.51 7.53 7.67 -10.99 -0.08 7.45 16 7 O -0.53 -10.10 15.48 5.56 0.09 -10.02 16 8 N -0.61 -9.01 2.87 -181.57 -0.52 -9.53 16 9 C 0.08 0.81 10.26 59.85 0.61 1.43 16 10 C 0.11 2.13 5.42 -4.04 -0.02 2.10 16 11 C 0.13 2.76 4.31 -72.26 -0.31 2.45 16 12 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.16 -3.34 8.03 -26.08 -0.21 -3.55 16 14 C 0.16 3.94 7.22 -8.51 -0.06 3.88 16 15 N -0.60 -15.81 3.64 -176.83 -0.64 -16.46 16 16 C -0.22 -6.15 10.55 -15.06 -0.16 -6.31 16 17 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.94 11.73 55.49 0.65 -27.29 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 25 H 0.09 0.65 8.06 -52.48 -0.42 0.22 16 26 H 0.11 0.85 8.06 -52.48 -0.42 0.43 16 27 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.37 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.09 0.75 7.40 -51.93 -0.38 0.36 16 32 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.53 6.45 -51.93 -0.33 0.20 16 35 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 37 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 38 H 0.08 1.81 7.95 -51.93 -0.41 1.40 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.69 7.50 -51.93 -0.39 1.30 16 41 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -33.27 347.20 -8.18 -41.46 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -7.31 Total: -1.63 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -0.65 Total: 0.90 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.51 Total: -53.28 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.27 -8.18 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488656467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.843 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds