Wall clock time and date at job start Mon Mar 30 2020 01:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00042 * 2 1 4 4 C 1.53007 * 109.47160 * 124.99536 * 3 2 1 5 5 C 1.53000 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46997 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99866 * 0.02562 * 6 5 4 8 8 N 1.34782 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99673 * 0.02562 * 8 6 5 10 10 C 1.46497 * 119.99957 * 179.97438 * 8 6 5 11 11 C 1.53001 * 109.46713 * 90.21209 * 10 8 6 12 12 H 1.09004 * 112.74023 * 43.11855 * 11 10 8 13 13 C 1.53493 * 113.52484 * 272.32168 * 11 10 8 14 14 C 1.53750 * 83.25997 * 218.97864 * 13 11 10 15 15 N 1.47068 * 87.88968 * 26.23646 * 14 13 11 16 16 C 1.36930 * 136.05575 * 152.96333 * 15 14 13 17 17 H 1.08002 * 120.00155 * 176.85227 * 16 15 14 18 18 C 1.38817 * 120.00079 * 357.13465 * 16 15 14 19 19 N 1.31613 * 119.99851 * 359.71881 * 18 16 15 20 20 Si 1.86803 * 119.99748 * 179.72291 * 18 16 15 21 21 H 1.48500 * 109.47325 * 60.00046 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47415 * 299.99592 * 20 18 16 24 24 H 1.08001 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00269 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99954 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47458 * 4.99283 * 3 2 1 28 28 H 1.09002 * 109.46784 * 244.99296 * 3 2 1 29 29 H 1.08999 * 109.46629 * 60.00088 * 4 3 2 30 30 H 1.08997 * 109.46855 * 299.99974 * 4 3 2 31 31 H 1.09009 * 109.47185 * 60.00259 * 5 4 3 32 32 H 1.08994 * 109.47644 * 300.00432 * 5 4 3 33 33 H 1.09009 * 109.46669 * 273.42130 * 9 8 6 34 34 H 1.08992 * 109.47660 * 33.42407 * 9 8 6 35 35 H 1.08997 * 109.47265 * 153.42882 * 9 8 6 36 36 H 1.09000 * 109.47356 * 330.21633 * 10 8 6 37 37 H 1.08994 * 109.47369 * 210.21114 * 10 8 6 38 38 H 1.09001 * 114.20096 * 332.73325 * 13 11 10 39 39 H 1.08993 * 114.20898 * 105.35690 * 13 11 10 40 40 H 1.09000 * 113.46282 * 271.50227 * 14 13 11 41 41 H 1.09001 * 113.55805 * 140.98789 * 14 13 11 42 42 H 0.97005 * 119.99855 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7568 2.6858 2.3456 7 8 4.8203 1.7390 3.1010 8 7 5.5424 3.7623 2.5468 9 6 5.4660 4.9056 1.6340 10 6 6.4717 3.7896 3.6789 11 6 7.8203 3.2115 3.2456 12 1 8.1357 3.5672 2.2647 13 6 7.9121 1.6873 3.4017 14 6 9.3464 2.0020 3.8574 15 7 8.8650 3.3277 4.2743 16 6 9.2317 4.2616 5.2060 17 1 8.7074 5.2042 5.2612 18 6 10.2813 3.9993 6.0759 19 7 10.9203 2.8507 6.0086 20 14 10.7866 5.2767 7.3419 21 1 9.6395 5.5641 8.2401 22 1 11.9238 4.7567 8.1429 23 1 11.1979 6.5242 6.6494 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6214 1.4024 -0.9314 29 1 3.7399 0.5065 1.0922 30 1 2.4771 1.2356 2.1130 31 1 3.0957 3.4847 1.2706 32 1 4.3582 2.7550 0.2500 33 1 6.1316 4.7392 0.7868 34 1 4.4427 5.0168 1.2757 35 1 5.7673 5.8114 2.1601 36 1 6.0664 3.1930 4.4962 37 1 6.6077 4.8183 4.0127 38 1 7.2710 1.2787 4.1828 39 1 7.8509 1.1374 2.4626 40 1 10.0640 2.0388 3.0378 41 1 9.6856 1.3825 4.6877 42 1 11.6535 2.6673 6.6167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488656468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:00 Heat of formation + Delta-G solvation = 32.743112 kcal Electronic energy + Delta-G solvation = -20258.204969 eV Core-core repulsion = 17240.639799 eV Total energy + Delta-G solvation = -3017.565170 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79880 -37.89076 -36.15608 -35.12685 -32.56125 -32.10144 -28.91993 -27.82669 -27.20665 -25.89176 -23.33509 -22.76660 -21.42213 -20.08331 -19.10897 -18.76610 -16.92659 -16.57389 -16.11850 -15.77786 -15.37661 -14.72736 -14.42412 -13.91192 -13.74192 -13.46317 -13.35411 -12.94291 -12.65249 -12.41054 -12.17115 -11.97378 -11.75110 -11.63846 -11.42096 -11.08895 -10.99331 -10.82534 -10.78743 -10.69057 -10.37426 -9.78829 -9.71441 -9.60340 -9.50616 -9.32286 -8.73399 -8.21390 -6.81374 -5.70743 -3.04026 2.05985 2.89171 3.25517 3.41523 3.45262 3.47011 4.47536 4.54933 4.65097 4.79758 5.02089 5.09932 5.11806 5.29227 5.34141 5.39162 5.45303 5.51111 5.54123 5.59260 5.67711 5.71382 5.74441 5.97292 6.02203 6.09066 6.14560 6.23116 6.41123 6.48720 6.55024 6.61570 6.74261 6.86683 6.89664 7.32211 7.54250 7.66864 7.67860 8.05033 8.46326 9.08025 9.75530 10.71803 11.46079 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039532 B = 0.003496 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.120470 B = 8007.820936 C = 8317.143153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.096 4.096 4 C -0.100 4.100 5 C -0.138 4.138 6 C 0.507 3.493 7 O -0.532 6.532 8 N -0.614 5.614 9 C 0.080 3.920 10 C 0.116 3.884 11 C 0.131 3.869 12 H 0.039 0.961 13 C -0.153 4.153 14 C 0.148 3.852 15 N -0.602 5.602 16 C -0.218 4.218 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.286 1.286 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.073 0.927 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 0.104 -13.675 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.166 4.166 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.178 4.178 6 C 0.295 3.705 7 O -0.408 6.408 8 N -0.348 5.348 9 C -0.064 4.064 10 C -0.007 4.007 11 C 0.023 3.977 12 H 0.056 0.944 13 C -0.191 4.191 14 C 0.022 3.978 15 N -0.328 5.328 16 C -0.346 4.346 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.213 1.213 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.862 -0.250 -12.959 21.268 hybrid contribution 0.526 0.935 0.482 1.176 sum -16.335 0.684 -12.477 20.567 Atomic orbital electron populations 1.23830 0.95990 1.01696 1.02267 1.22993 0.96017 0.98731 0.98881 1.20810 0.98198 0.95327 0.98943 1.21290 0.97653 0.96558 0.98316 1.21713 0.98214 1.00125 0.97790 1.20614 0.81130 0.82239 0.86526 1.90712 1.68297 1.34643 1.47196 1.47946 1.39987 1.17266 1.29608 1.21768 1.01511 0.89174 0.93932 1.21906 0.89208 1.01906 0.87721 1.22428 0.88662 0.93983 0.92637 0.94418 1.23642 1.00133 0.95415 0.99906 1.22152 0.91594 0.87233 0.96790 1.45622 1.32005 1.19205 1.35926 1.18826 1.13232 0.95358 1.07138 0.90417 1.24788 0.98567 0.97465 0.99616 1.69830 1.24382 1.22551 1.39746 0.86214 0.77927 0.80444 0.81240 1.21067 1.21561 1.21273 0.88723 0.88672 0.87319 0.91601 0.90944 0.90909 0.91110 0.89353 0.89159 0.92715 0.91588 0.90940 0.89687 0.91053 0.89998 0.93469 0.96258 0.90833 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 14.32 29.01 0.42 -1.13 16 2 C -0.15 -1.24 9.52 -36.03 -0.34 -1.58 16 3 C -0.10 -0.76 5.66 -27.88 -0.16 -0.92 16 4 C -0.10 -1.03 4.49 -26.73 -0.12 -1.15 16 5 C -0.14 -1.38 4.30 -27.89 -0.12 -1.50 16 6 C 0.51 7.56 7.67 -10.99 -0.08 7.47 16 7 O -0.53 -10.09 14.98 5.55 0.08 -10.01 16 8 N -0.61 -9.05 2.87 -181.58 -0.52 -9.57 16 9 C 0.08 0.82 10.22 59.84 0.61 1.43 16 10 C 0.12 2.17 5.40 -4.04 -0.02 2.15 16 11 C 0.13 2.81 4.31 -72.40 -0.31 2.50 16 12 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.15 -3.30 7.46 -26.09 -0.19 -3.49 16 14 C 0.15 3.73 7.48 -8.38 -0.06 3.67 16 15 N -0.60 -15.91 3.65 -176.84 -0.64 -16.56 16 16 C -0.22 -6.18 10.55 -15.06 -0.16 -6.34 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -28.00 11.45 55.49 0.64 -27.37 16 20 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.09 0.66 7.84 -52.49 -0.41 0.24 16 25 H 0.09 0.64 8.06 -52.48 -0.42 0.22 16 26 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 27 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.09 0.70 7.41 -51.92 -0.38 0.32 16 32 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 33 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.07 0.49 6.58 -51.93 -0.34 0.15 16 35 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 36 H 0.08 1.79 7.13 -51.93 -0.37 1.42 16 37 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 38 H 0.08 1.88 7.92 -51.93 -0.41 1.47 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 2.05 7.00 -51.93 -0.36 1.68 16 42 H 0.25 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -33.27 345.37 -8.18 -41.45 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.27 Total: -1.34 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -0.64 Total: 0.81 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.53 Total: -53.50 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.27 -8.18 -41.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488656468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.190 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds