Wall clock time and date at job start Mon Mar 30 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50695 * 120.00042 * 2 1 4 4 C 1.53007 * 109.47160 * 124.99536 * 3 2 1 5 5 C 1.53000 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46997 * 179.97438 * 5 4 3 7 7 O 1.21286 * 119.99866 * 0.02562 * 6 5 4 8 8 N 1.34782 * 120.00178 * 179.97438 * 6 5 4 9 9 C 1.46496 * 119.99673 * 0.02562 * 8 6 5 10 10 C 1.46497 * 119.99957 * 179.97438 * 8 6 5 11 11 C 1.53001 * 109.46713 * 90.21209 * 10 8 6 12 12 H 1.09004 * 112.74023 * 43.11855 * 11 10 8 13 13 C 1.53493 * 113.52484 * 272.32168 * 11 10 8 14 14 C 1.53750 * 83.25997 * 218.97864 * 13 11 10 15 15 N 1.47068 * 87.88968 * 26.23646 * 14 13 11 16 16 C 1.36930 * 136.05575 * 152.96333 * 15 14 13 17 17 H 1.08002 * 120.00155 * 176.85227 * 16 15 14 18 18 C 1.38817 * 120.00079 * 357.13465 * 16 15 14 19 19 N 1.31613 * 119.99851 * 359.71881 * 18 16 15 20 20 Si 1.86803 * 119.99748 * 179.72291 * 18 16 15 21 21 H 1.48500 * 109.47325 * 60.00046 * 20 18 16 22 22 H 1.48501 * 109.46918 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47415 * 299.99592 * 20 18 16 24 24 H 1.08001 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.00269 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99954 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47458 * 4.99283 * 3 2 1 28 28 H 1.09002 * 109.46784 * 244.99296 * 3 2 1 29 29 H 1.08999 * 109.46629 * 60.00088 * 4 3 2 30 30 H 1.08997 * 109.46855 * 299.99974 * 4 3 2 31 31 H 1.09009 * 109.47185 * 60.00259 * 5 4 3 32 32 H 1.08994 * 109.47644 * 300.00432 * 5 4 3 33 33 H 1.09009 * 109.46669 * 273.42130 * 9 8 6 34 34 H 1.08992 * 109.47660 * 33.42407 * 9 8 6 35 35 H 1.08997 * 109.47265 * 153.42882 * 9 8 6 36 36 H 1.09000 * 109.47356 * 330.21633 * 10 8 6 37 37 H 1.08994 * 109.47369 * 210.21114 * 10 8 6 38 38 H 1.09001 * 114.20096 * 332.73325 * 13 11 10 39 39 H 1.08993 * 114.20898 * 105.35690 * 13 11 10 40 40 H 1.09000 * 113.46282 * 271.50227 * 14 13 11 41 41 H 1.09001 * 113.55805 * 140.98789 * 14 13 11 42 42 H 0.97005 * 119.99855 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7568 2.6858 2.3456 7 8 4.8203 1.7390 3.1010 8 7 5.5424 3.7623 2.5468 9 6 5.4660 4.9056 1.6340 10 6 6.4717 3.7896 3.6789 11 6 7.8203 3.2115 3.2456 12 1 8.1357 3.5672 2.2647 13 6 7.9121 1.6873 3.4017 14 6 9.3464 2.0020 3.8574 15 7 8.8650 3.3277 4.2743 16 6 9.2317 4.2616 5.2060 17 1 8.7074 5.2042 5.2612 18 6 10.2813 3.9993 6.0759 19 7 10.9203 2.8507 6.0086 20 14 10.7866 5.2767 7.3419 21 1 9.6395 5.5641 8.2401 22 1 11.9238 4.7567 8.1429 23 1 11.1979 6.5242 6.6494 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1316 0.0894 28 1 2.6214 1.4024 -0.9314 29 1 3.7399 0.5065 1.0922 30 1 2.4771 1.2356 2.1130 31 1 3.0957 3.4847 1.2706 32 1 4.3582 2.7550 0.2500 33 1 6.1316 4.7392 0.7868 34 1 4.4427 5.0168 1.2757 35 1 5.7673 5.8114 2.1601 36 1 6.0664 3.1930 4.4962 37 1 6.6077 4.8183 4.0127 38 1 7.2710 1.2787 4.1828 39 1 7.8509 1.1374 2.4626 40 1 10.0640 2.0388 3.0378 41 1 9.6856 1.3825 4.6877 42 1 11.6535 2.6673 6.6167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488656468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:59 Heat of formation + Delta-G solvation = 12.661659 kcal Electronic energy + Delta-G solvation = -20259.075766 eV Core-core repulsion = 17240.639799 eV Total energy + Delta-G solvation = -3018.435967 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.06612 -39.64339 -36.90275 -36.34644 -34.28788 -33.28693 -30.24539 -29.90428 -28.06051 -26.95999 -25.40400 -24.15672 -22.53657 -21.05113 -20.70741 -19.85332 -18.75279 -17.80599 -17.34445 -16.94462 -16.74239 -16.10126 -15.82537 -15.57083 -14.98368 -14.69159 -14.31218 -14.05031 -13.87630 -13.71775 -13.45752 -13.18482 -13.13026 -12.95468 -12.64495 -12.62844 -12.45249 -12.37533 -12.24539 -11.79665 -11.70251 -11.67681 -11.56264 -11.18598 -10.85089 -10.67091 -10.14573 -9.55088 -8.91812 -7.88950 -5.24160 1.44421 1.45710 1.49147 1.54900 1.76824 2.10776 2.49118 3.30446 3.42128 3.72188 3.87927 3.91695 4.10569 4.23083 4.33996 4.35954 4.38002 4.42919 4.45232 4.66661 4.70078 4.71372 4.79406 4.83335 4.87860 4.98353 5.00532 5.02227 5.07545 5.12365 5.21881 5.28770 5.45512 5.49678 5.54232 5.74542 5.82626 5.93508 5.95090 6.55426 6.89144 7.32678 7.60333 8.61834 9.28493 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039532 B = 0.003496 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.120470 B = 8007.820936 C = 8317.143153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.087 4.087 4 C -0.097 4.097 5 C -0.126 4.126 6 C 0.498 3.502 7 O -0.583 6.583 8 N -0.614 5.614 9 C 0.072 3.928 10 C 0.130 3.870 11 C 0.139 3.861 12 H 0.054 0.946 13 C -0.129 4.129 14 C 0.144 3.856 15 N -0.629 5.629 16 C -0.225 4.225 17 H 0.090 0.910 18 C -0.073 4.073 19 N -0.957 5.957 20 Si 0.983 3.017 21 H -0.275 1.275 22 H -0.297 1.297 23 H -0.273 1.273 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.020 0.980 41 H 0.038 0.962 42 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.965 2.174 -15.655 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.185 4.185 3 C -0.124 4.124 4 C -0.135 4.135 5 C -0.165 4.165 6 C 0.288 3.712 7 O -0.463 6.463 8 N -0.347 5.347 9 C -0.069 4.069 10 C 0.005 3.995 11 C 0.032 3.968 12 H 0.071 0.929 13 C -0.167 4.167 14 C 0.018 3.982 15 N -0.356 5.356 16 C -0.353 4.353 17 H 0.108 0.892 18 C -0.265 4.265 19 N -0.606 5.606 20 Si 0.810 3.190 21 H -0.201 1.201 22 H -0.223 1.223 23 H -0.199 1.199 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -18.747 1.859 -14.994 24.078 hybrid contribution 1.037 0.247 1.041 1.490 sum -17.710 2.106 -13.953 22.644 Atomic orbital electron populations 1.24008 0.95886 1.02515 1.01155 1.23109 0.96477 0.99021 0.99924 1.20751 0.97895 0.95493 0.98248 1.21224 0.97553 0.96243 0.98499 1.21749 0.97644 1.00848 0.96287 1.21596 0.81218 0.81240 0.87132 1.90698 1.69799 1.36567 1.49218 1.48020 1.38829 1.18824 1.29055 1.22092 1.04295 0.87330 0.93231 1.21403 0.88506 1.00984 0.88582 1.22501 0.88850 0.93614 0.91871 0.92897 1.23362 0.96924 0.96273 1.00161 1.22116 0.93509 0.86978 0.95617 1.45946 1.33550 1.19198 1.36886 1.19299 1.12786 0.95950 1.07232 0.89204 1.25720 0.99095 0.99626 1.02094 1.70046 1.25011 1.24702 1.40843 0.85092 0.77271 0.78076 0.78538 1.20101 1.22304 1.19905 0.87713 0.88154 0.87869 0.90115 0.89546 0.93016 0.93243 0.86203 0.86413 0.91491 0.87872 0.90750 0.92787 0.90748 0.91788 0.91004 0.96268 0.94346 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.69 14.32 67.78 0.97 -1.72 16 2 C -0.17 -2.54 9.52 25.65 0.24 -2.30 16 3 C -0.09 -1.14 5.66 29.85 0.17 -0.97 16 4 C -0.10 -1.83 4.49 30.60 0.14 -1.69 16 5 C -0.13 -2.07 4.30 29.85 0.13 -1.94 16 6 C 0.50 13.97 7.67 87.65 0.67 14.64 16 7 O -0.58 -22.26 14.98 -3.05 -0.05 -22.31 16 8 N -0.61 -16.72 2.87 -846.78 -2.43 -19.15 16 9 C 0.07 1.19 10.22 127.77 1.31 2.50 16 10 C 0.13 4.79 5.40 86.38 0.47 5.26 16 11 C 0.14 5.87 4.31 41.79 0.18 6.05 16 12 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.13 -5.63 7.46 31.01 0.23 -5.40 16 14 C 0.14 7.47 7.48 83.26 0.62 8.09 16 15 N -0.63 -33.71 3.65 -713.40 -2.60 -36.31 16 16 C -0.22 -12.80 10.55 84.04 0.89 -11.92 16 17 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.96 -60.21 11.45 21.65 0.25 -59.96 16 20 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H 0.10 1.18 7.84 -2.91 -0.02 1.16 16 25 H 0.10 1.21 8.06 -2.91 -0.02 1.19 16 26 H 0.10 1.62 8.06 -2.91 -0.02 1.60 16 27 H 0.08 0.84 7.79 -2.39 -0.02 0.82 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.18 8.10 -2.39 -0.02 1.16 16 30 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 31 H 0.12 1.28 7.41 -2.38 -0.02 1.26 16 32 H 0.12 1.37 8.11 -2.39 -0.02 1.36 16 33 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 0.96 6.58 -2.39 -0.02 0.94 16 35 H 0.07 1.23 7.85 -2.39 -0.02 1.21 16 36 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 37 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 38 H 0.06 3.03 7.92 -2.39 -0.02 3.01 16 39 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 2.24 7.00 -2.39 -0.02 2.23 16 42 H 0.25 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -75.10 345.37 4.64 -70.46 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.96 Total: 11.92 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.48 Total: 6.80 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -4.79 Total: -115.42 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.10 4.64 -70.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488656468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.122 kcal (2) G-P(sol) polarization free energy of solvation -75.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds