Wall clock time and date at job start Mon Mar 30 2020 00:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47257 * 2 1 4 4 C 1.34776 * 120.00065 * 269.99955 * 3 2 1 5 5 O 1.21618 * 120.00265 * 179.97438 * 4 3 2 6 6 C 1.47100 * 119.99943 * 359.97438 * 4 3 2 7 7 C 1.33002 * 120.00124 * 174.78560 * 6 4 3 8 8 C 1.50704 * 119.99742 * 5.63676 * 7 6 4 9 9 C 1.50702 * 120.00116 * 185.63915 * 7 6 4 10 10 C 1.46500 * 120.00350 * 90.00068 * 3 2 1 11 11 H 1.09008 * 110.90872 * 356.10150 * 10 3 2 12 12 C 1.55158 * 111.00531 * 119.99494 * 10 3 2 13 13 C 1.54323 * 102.94182 * 153.57901 * 12 10 3 14 14 N 1.47024 * 107.26961 * 337.81032 * 13 12 10 15 15 C 1.36943 * 125.64833 * 178.90404 * 14 13 12 16 16 H 1.07997 * 119.99974 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99703 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00438 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47495 * 60.00026 * 19 17 15 21 21 H 1.48499 * 109.47330 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47050 * 299.99924 * 19 17 15 23 23 C 1.47426 * 108.70437 * 358.94185 * 14 13 12 24 24 H 1.09001 * 109.46726 * 299.99991 * 1 2 3 25 25 H 1.09002 * 109.47179 * 60.00037 * 1 2 3 26 26 H 1.08993 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47231 * 240.00048 * 2 1 3 28 28 H 1.09002 * 109.47179 * 119.99963 * 2 1 3 29 29 H 1.07999 * 120.00318 * 354.79202 * 6 4 3 30 30 H 1.08997 * 109.46983 * 58.17945 * 8 7 6 31 31 H 1.09001 * 109.46802 * 178.17880 * 8 7 6 32 32 H 1.08996 * 109.47019 * 298.17640 * 8 7 6 33 33 H 1.08997 * 109.46854 * 89.99691 * 9 7 6 34 34 H 1.08998 * 109.46833 * 210.00163 * 9 7 6 35 35 H 1.09004 * 109.46817 * 330.00116 * 9 7 6 36 36 H 1.09003 * 110.71997 * 35.22046 * 12 10 3 37 37 H 1.08996 * 110.72138 * 271.94324 * 12 10 3 38 38 H 1.09001 * 109.88135 * 97.22334 * 13 12 10 39 39 H 1.08993 * 109.88375 * 218.39540 * 13 12 10 40 40 H 0.96995 * 120.00485 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.36662 * 142.97142 * 23 14 13 42 42 H 1.09000 * 110.36310 * 265.17948 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6480 3.1633 -1.1672 6 6 1.9984 1.3229 -2.4411 7 6 2.1200 1.9808 -3.5906 8 6 2.6306 3.3987 -3.5968 9 6 1.7471 1.3085 -4.8868 10 6 2.2626 2.0718 1.2687 11 1 1.9689 1.4488 2.1136 12 6 3.7471 2.5071 1.3882 13 6 3.6753 3.7239 2.3346 14 7 2.3044 4.2506 2.2652 15 6 1.8229 5.3186 2.9744 16 1 0.7956 5.6286 2.8527 17 6 2.6552 6.0025 3.8498 18 7 3.9074 5.6249 3.9979 19 14 1.9982 7.4588 4.8178 20 1 0.8664 7.0160 5.6711 21 1 3.0779 8.0114 5.6745 22 1 1.5282 8.5071 3.8768 23 6 1.5338 3.4382 1.3064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7199 0.2794 -2.4431 30 1 3.6202 3.4304 -3.1412 31 1 2.6918 3.7583 -4.6240 32 1 1.9490 4.0328 -3.0299 33 1 0.6948 1.4934 -5.1023 34 1 2.3596 1.7104 -5.6938 35 1 1.9173 0.2352 -4.8014 36 1 4.1431 2.7981 0.4153 37 1 4.3480 1.7113 1.8281 38 1 3.9021 3.4140 3.3547 39 1 4.3826 4.4875 2.0110 40 1 4.4889 6.1026 4.6098 41 1 0.5085 3.3119 1.6541 42 1 1.5446 3.9031 0.3205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494878931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:48 Heat of formation + Delta-G solvation = 13.044355 kcal Electronic energy + Delta-G solvation = -21275.053433 eV Core-core repulsion = 18256.634061 eV Total energy + Delta-G solvation = -3018.419372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04705 -37.10643 -35.48570 -35.09714 -32.27727 -30.22929 -29.02463 -28.25275 -27.71150 -26.51961 -24.28524 -23.31476 -21.42647 -19.93965 -19.39282 -17.78363 -17.00155 -16.52875 -15.66845 -14.83972 -14.51518 -14.27846 -14.02604 -13.91945 -13.73955 -13.61607 -13.03749 -12.68999 -12.48887 -12.24496 -12.12044 -11.94772 -11.85554 -11.66748 -11.58420 -11.49014 -11.02880 -10.80575 -10.74513 -10.54746 -10.11530 -10.02492 -9.78605 -9.54503 -9.07550 -8.81086 -8.47156 -8.14066 -6.63207 -5.57472 -2.89468 1.50224 3.30674 3.48631 3.52407 3.54120 3.59433 4.60327 4.64763 4.80180 4.89957 5.15810 5.20614 5.30424 5.35090 5.42996 5.56899 5.60420 5.65590 5.71101 5.73111 5.74163 5.80207 5.92596 6.00024 6.01079 6.16180 6.19559 6.37952 6.53485 6.57852 6.63876 6.71348 6.85784 6.87097 7.37730 7.68390 7.80194 7.84151 7.96871 8.40138 8.64401 9.36128 9.96878 10.64664 11.54275 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.005057 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.649734 B = 5535.840038 C = 5992.050277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 N -0.603 5.603 4 C 0.539 3.461 5 O -0.517 6.517 6 C -0.234 4.234 7 C -0.042 4.042 8 C -0.116 4.116 9 C -0.124 4.124 10 C 0.133 3.867 11 H 0.087 0.913 12 C -0.152 4.152 13 C 0.186 3.814 14 N -0.602 5.602 15 C -0.222 4.222 16 H 0.075 0.925 17 C -0.010 4.010 18 N -0.924 5.924 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.125 3.875 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.041 0.959 40 H 0.251 0.749 41 H 0.027 0.973 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -14.254 -14.268 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.336 5.336 4 C 0.330 3.670 5 O -0.395 6.395 6 C -0.255 4.255 7 C -0.044 4.044 8 C -0.172 4.172 9 C -0.180 4.180 10 C 0.029 3.971 11 H 0.105 0.895 12 C -0.192 4.192 13 C 0.061 3.939 14 N -0.329 5.329 15 C -0.350 4.350 16 H 0.093 0.907 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.742 3.258 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.002 4.002 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.178 -13.492 -14.082 19.945 hybrid contribution -0.405 0.508 0.669 0.933 sum -4.583 -12.984 -13.413 19.223 Atomic orbital electron populations 1.22232 0.96132 1.01733 1.02898 1.21538 0.94327 0.83070 1.02719 1.47857 1.65985 1.13570 1.06155 1.18478 0.78353 0.86270 0.83922 1.90822 1.44516 1.17127 1.87001 1.22561 1.09918 1.00566 0.92430 1.22554 0.91096 0.96473 0.94256 1.21038 1.03035 0.92392 1.00720 1.20989 1.02060 1.00332 0.94649 1.22353 0.97240 0.94201 0.83311 0.89455 1.23217 0.94686 0.99534 1.01715 1.21034 0.86887 0.90617 0.95388 1.44314 1.07552 1.33595 1.47441 1.19006 0.95498 1.04184 1.16326 0.90700 1.24773 0.95969 0.99675 1.00213 1.69963 1.04934 1.42127 1.40159 0.86209 0.77424 0.82510 0.79683 1.21305 1.21663 1.21279 1.21924 0.93467 0.89597 0.95181 0.92008 0.92417 0.91945 0.90617 0.90578 0.85948 0.89882 0.93365 0.89679 0.90511 0.91227 0.91446 0.90939 0.92881 0.93913 0.94067 0.93876 0.95433 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.11 1.17 5.85 -4.04 -0.02 1.14 16 3 N -0.60 -9.34 2.56 -165.06 -0.42 -9.77 16 4 C 0.54 8.89 6.87 -12.67 -0.09 8.80 16 5 O -0.52 -10.50 9.14 5.26 0.05 -10.45 16 6 C -0.23 -2.91 8.85 -37.80 -0.33 -3.25 16 7 C -0.04 -0.48 6.11 -101.16 -0.62 -1.10 16 8 C -0.12 -1.52 8.34 36.01 0.30 -1.22 16 9 C -0.12 -0.96 9.99 36.01 0.36 -0.60 16 10 C 0.13 2.53 3.54 -65.79 -0.23 2.30 16 11 H 0.09 1.57 7.92 -51.92 -0.41 1.16 16 12 C -0.15 -3.22 6.33 -24.90 -0.16 -3.37 16 13 C 0.19 4.91 5.37 -3.06 -0.02 4.90 16 14 N -0.60 -16.68 3.39 -170.08 -0.58 -17.26 16 15 C -0.22 -6.58 10.28 -15.06 -0.15 -6.74 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -28.47 10.31 55.49 0.57 -27.90 16 19 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C 0.13 2.91 6.57 -2.53 -0.02 2.89 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.67 6.03 -51.93 -0.31 0.36 16 28 H 0.08 0.76 7.99 -51.93 -0.41 0.35 16 29 H 0.12 1.19 6.16 -52.49 -0.32 0.86 16 30 H 0.08 1.25 7.31 -51.93 -0.38 0.87 16 31 H 0.05 0.51 7.93 -51.93 -0.41 0.10 16 32 H 0.08 1.32 7.15 -51.93 -0.37 0.95 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 35 H 0.07 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.07 1.61 6.25 -51.93 -0.32 1.28 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.04 1.21 7.38 -51.93 -0.38 0.83 16 39 H 0.04 1.22 7.51 -51.93 -0.39 0.83 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 1.25 5.54 -51.93 -0.29 0.96 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -33.78 328.35 -8.08 -41.86 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.93 Total: -1.51 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -0.70 Total: 2.01 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.43 Total: -54.93 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.45 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.78 -8.08 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494878931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.909 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds