Wall clock time and date at job start Mon Mar 30 2020 00:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47257 * 2 1 4 4 C 1.34776 * 120.00065 * 269.99955 * 3 2 1 5 5 O 1.21618 * 120.00265 * 179.97438 * 4 3 2 6 6 C 1.47100 * 119.99943 * 359.97438 * 4 3 2 7 7 C 1.33002 * 120.00124 * 174.78560 * 6 4 3 8 8 C 1.50704 * 119.99742 * 5.63676 * 7 6 4 9 9 C 1.50702 * 120.00116 * 185.63915 * 7 6 4 10 10 C 1.46500 * 120.00350 * 90.00068 * 3 2 1 11 11 H 1.09008 * 110.90872 * 356.10150 * 10 3 2 12 12 C 1.55158 * 111.00531 * 119.99494 * 10 3 2 13 13 C 1.54323 * 102.94182 * 153.57901 * 12 10 3 14 14 N 1.47024 * 107.26961 * 337.81032 * 13 12 10 15 15 C 1.36943 * 125.64833 * 178.90404 * 14 13 12 16 16 H 1.07997 * 119.99974 * 180.02562 * 15 14 13 17 17 C 1.38810 * 119.99703 * 0.02562 * 15 14 13 18 18 N 1.31620 * 120.00438 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99845 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47495 * 60.00026 * 19 17 15 21 21 H 1.48499 * 109.47330 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47050 * 299.99924 * 19 17 15 23 23 C 1.47426 * 108.70437 * 358.94185 * 14 13 12 24 24 H 1.09001 * 109.46726 * 299.99991 * 1 2 3 25 25 H 1.09002 * 109.47179 * 60.00037 * 1 2 3 26 26 H 1.08993 * 109.47569 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47231 * 240.00048 * 2 1 3 28 28 H 1.09002 * 109.47179 * 119.99963 * 2 1 3 29 29 H 1.07999 * 120.00318 * 354.79202 * 6 4 3 30 30 H 1.08997 * 109.46983 * 58.17945 * 8 7 6 31 31 H 1.09001 * 109.46802 * 178.17880 * 8 7 6 32 32 H 1.08996 * 109.47019 * 298.17640 * 8 7 6 33 33 H 1.08997 * 109.46854 * 89.99691 * 9 7 6 34 34 H 1.08998 * 109.46833 * 210.00163 * 9 7 6 35 35 H 1.09004 * 109.46817 * 330.00116 * 9 7 6 36 36 H 1.09003 * 110.71997 * 35.22046 * 12 10 3 37 37 H 1.08996 * 110.72138 * 271.94324 * 12 10 3 38 38 H 1.09001 * 109.88135 * 97.22334 * 13 12 10 39 39 H 1.08993 * 109.88375 * 218.39540 * 13 12 10 40 40 H 0.96995 * 120.00485 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.36662 * 142.97142 * 23 14 13 42 42 H 1.09000 * 110.36310 * 265.17948 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 -1.1672 5 8 2.6480 3.1633 -1.1672 6 6 1.9984 1.3229 -2.4411 7 6 2.1200 1.9808 -3.5906 8 6 2.6306 3.3987 -3.5968 9 6 1.7471 1.3085 -4.8868 10 6 2.2626 2.0718 1.2687 11 1 1.9689 1.4488 2.1136 12 6 3.7471 2.5071 1.3882 13 6 3.6753 3.7239 2.3346 14 7 2.3044 4.2506 2.2652 15 6 1.8229 5.3186 2.9744 16 1 0.7956 5.6286 2.8527 17 6 2.6552 6.0025 3.8498 18 7 3.9074 5.6249 3.9979 19 14 1.9982 7.4588 4.8178 20 1 0.8664 7.0160 5.6711 21 1 3.0779 8.0114 5.6745 22 1 1.5282 8.5071 3.8768 23 6 1.5338 3.4382 1.3064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7199 0.2794 -2.4431 30 1 3.6202 3.4304 -3.1412 31 1 2.6918 3.7583 -4.6240 32 1 1.9490 4.0328 -3.0299 33 1 0.6948 1.4934 -5.1023 34 1 2.3596 1.7104 -5.6938 35 1 1.9173 0.2352 -4.8014 36 1 4.1431 2.7981 0.4153 37 1 4.3480 1.7113 1.8281 38 1 3.9021 3.4140 3.3547 39 1 4.3826 4.4875 2.0110 40 1 4.4889 6.1026 4.6098 41 1 0.5085 3.3119 1.6541 42 1 1.5446 3.9031 0.3205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494878931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:47 Heat of formation + Delta-G solvation = -8.088033 kcal Electronic energy + Delta-G solvation = -21275.969802 eV Core-core repulsion = 18256.634061 eV Total energy + Delta-G solvation = -3019.335741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.37121 -38.74505 -36.85551 -36.15960 -34.29529 -31.67022 -30.67061 -29.64667 -28.59902 -28.06527 -26.32053 -24.29070 -22.85667 -22.03009 -20.70403 -19.02279 -18.77088 -17.89698 -17.10920 -16.65858 -16.08387 -15.86751 -15.36120 -15.06209 -14.76752 -14.62708 -14.37906 -14.16943 -14.09341 -13.65604 -13.42733 -13.25489 -13.11015 -12.94980 -12.76968 -12.75268 -12.54972 -12.35734 -12.18189 -12.08210 -12.00743 -11.93755 -11.80909 -11.48428 -10.72512 -10.21172 -10.05553 -9.45914 -8.85322 -7.85377 -5.21583 0.50223 1.42485 1.47730 1.53921 2.08374 2.41303 2.50208 3.31524 3.64596 3.74477 3.93470 3.95505 4.03184 4.13209 4.25748 4.33464 4.47169 4.56497 4.62506 4.66128 4.72271 4.72881 4.84823 4.90139 4.93705 4.95588 5.01581 5.03437 5.10825 5.19321 5.26822 5.39858 5.42664 5.57979 5.63727 5.66584 5.73165 5.83873 6.17777 6.64588 7.08121 7.40929 7.75447 8.41968 9.25032 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025318 B = 0.005057 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.649734 B = 5535.840038 C = 5992.050277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.100 3.900 3 N -0.601 5.601 4 C 0.527 3.473 5 O -0.568 6.568 6 C -0.241 4.241 7 C -0.034 4.034 8 C -0.115 4.115 9 C -0.119 4.119 10 C 0.153 3.847 11 H 0.107 0.893 12 C -0.136 4.136 13 C 0.196 3.804 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.078 0.922 17 C -0.067 4.067 18 N -0.953 5.953 19 Si 0.984 3.016 20 H -0.272 1.272 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.124 3.876 24 H 0.040 0.960 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.160 0.840 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.018 0.982 39 H -0.006 1.006 40 H 0.247 0.753 41 H 0.031 0.969 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 -16.821 -15.632 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.021 4.021 3 N -0.333 5.333 4 C 0.320 3.680 5 O -0.450 6.450 6 C -0.262 4.262 7 C -0.036 4.036 8 C -0.171 4.171 9 C -0.175 4.175 10 C 0.048 3.952 11 H 0.124 0.876 12 C -0.175 4.175 13 C 0.071 3.929 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.259 4.259 18 N -0.602 5.602 19 Si 0.811 3.189 20 H -0.197 1.197 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.002 4.002 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.177 0.823 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.036 0.964 39 H 0.013 0.987 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.651 -16.120 -15.472 23.047 hybrid contribution 0.037 1.344 1.018 1.687 sum -5.614 -14.775 -14.454 21.418 Atomic orbital electron populations 1.22191 0.95301 1.03349 1.01639 1.21917 0.94940 0.80309 1.04944 1.47921 1.65759 1.15219 1.04376 1.19301 0.77325 0.85935 0.85459 1.90815 1.46844 1.19557 1.87781 1.22609 1.11232 1.02035 0.90278 1.22874 0.89359 0.95232 0.96090 1.20944 1.00962 0.93866 1.01377 1.21050 1.02916 1.01204 0.92306 1.21956 0.94515 0.92704 0.86027 0.87558 1.22996 0.96961 0.97913 0.99655 1.20752 0.85642 0.91405 0.95119 1.44628 1.08545 1.33946 1.47845 1.19423 0.95923 1.05339 1.16870 0.90396 1.25711 0.96236 1.02631 1.01368 1.70202 1.06123 1.43234 1.40596 0.85081 0.77021 0.78700 0.78078 1.19741 1.21625 1.20657 1.21982 0.93754 0.91462 0.93046 0.94081 0.92904 0.88832 0.87612 0.89158 0.82259 0.92489 0.90792 0.92817 0.89122 0.90152 0.89293 0.92267 0.89967 0.96368 0.98737 0.94335 0.95090 0.95139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.10 1.82 5.85 86.38 0.51 2.32 16 3 N -0.60 -17.74 2.56 -794.37 -2.03 -19.77 16 4 C 0.53 17.14 6.87 86.57 0.59 17.73 16 5 O -0.57 -24.16 9.14 -4.09 -0.04 -24.20 16 6 C -0.24 -5.42 8.85 23.43 0.21 -5.21 16 7 C -0.03 -0.71 6.11 -17.61 -0.11 -0.81 16 8 C -0.12 -3.07 8.34 71.24 0.59 -2.48 16 9 C -0.12 -1.36 9.99 71.24 0.71 -0.65 16 10 C 0.15 5.79 3.54 46.38 0.16 5.95 16 11 H 0.11 3.65 7.92 -2.38 -0.02 3.63 16 12 C -0.14 -5.85 6.33 31.78 0.20 -5.65 16 13 C 0.20 10.92 5.37 86.73 0.47 11.38 16 14 N -0.62 -35.97 3.39 -692.01 -2.35 -38.32 16 15 C -0.25 -15.14 10.28 84.03 0.86 -14.28 16 16 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 17 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 18 N -0.95 -61.08 10.31 21.65 0.22 -60.86 16 19 Si 0.98 48.46 29.55 68.60 2.03 50.49 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 23 C 0.12 5.92 6.57 86.85 0.57 6.49 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.11 1.34 6.03 -2.39 -0.01 1.32 16 28 H 0.09 1.44 7.99 -2.39 -0.02 1.42 16 29 H 0.16 2.32 6.16 -2.91 -0.02 2.30 16 30 H 0.06 1.81 7.31 -2.39 -0.02 1.79 16 31 H 0.07 1.51 7.93 -2.39 -0.02 1.49 16 32 H 0.05 1.77 7.15 -2.39 -0.02 1.75 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.79 8.03 -2.39 -0.02 0.77 16 35 H 0.09 0.71 8.06 -2.38 -0.02 0.69 16 36 H 0.06 2.72 6.25 -2.39 -0.01 2.70 16 37 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.02 1.08 7.38 -2.39 -0.02 1.06 16 39 H -0.01 -0.36 7.51 -2.39 -0.02 -0.38 16 40 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 1.61 5.54 -2.39 -0.01 1.60 16 Total: -1.00 -79.21 328.35 4.79 -74.42 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.98 Total: 9.08 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 5.97 Total: 9.16 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -4.16 Total: -118.95 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.04 Total: -24.20 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -79.21 4.79 -74.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494878931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.332 kcal (2) G-P(sol) polarization free energy of solvation -79.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds