Wall clock time and date at job start Mon Mar 30 2020 01:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99658 * 2 1 4 4 C 1.52992 * 109.47485 * 90.00211 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46725 * 59.99976 * 11 9 7 13 13 H 1.48498 * 109.47172 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46920 * 300.00189 * 11 9 7 15 15 C 1.34777 * 120.00297 * 180.02562 * 2 1 3 16 16 O 1.21276 * 119.99683 * 179.97438 * 15 2 1 17 17 C 1.50695 * 119.99811 * 359.97438 * 15 2 1 18 18 H 1.09005 * 115.52894 * 325.59242 * 17 15 2 19 19 C 1.53005 * 117.45940 * 111.08310 * 17 15 2 20 20 H 1.09002 * 119.29730 * 356.29076 * 19 17 15 21 21 C 1.54262 * 118.19993 * 201.21820 * 19 17 15 22 22 C 1.54894 * 104.19282 * 272.21127 * 21 19 17 23 23 C 1.54821 * 102.74818 * 37.91331 * 22 21 19 24 24 C 1.53000 * 117.45907 * 180.08663 * 17 15 2 25 25 H 1.08996 * 119.29977 * 3.71021 * 24 17 15 26 26 H 1.09000 * 109.46983 * 90.00199 * 1 2 3 27 27 H 1.08998 * 109.46888 * 210.00036 * 1 2 3 28 28 H 1.09001 * 109.47128 * 330.00022 * 1 2 3 29 29 H 1.09002 * 109.47280 * 329.99916 * 3 2 1 30 30 H 1.09001 * 109.46702 * 210.00108 * 3 2 1 31 31 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 32 32 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00803 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.48571 * 30.88634 * 21 19 17 38 38 H 1.09001 * 110.48920 * 153.53521 * 21 19 17 39 39 H 1.08995 * 110.75635 * 156.25851 * 22 21 19 40 40 H 1.09003 * 110.75186 * 279.62410 * 22 21 19 41 41 H 1.08998 * 110.47050 * 203.39942 * 23 22 21 42 42 H 1.09003 * 110.48330 * 80.77263 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2180 3.0353 1.4424 6 7 3.4617 3.4585 2.8236 7 6 4.1356 4.6240 3.0738 8 1 4.4871 5.2314 2.2529 9 6 4.3669 5.0247 4.3825 10 7 3.9390 4.2843 5.3829 11 14 5.2856 6.6150 4.7238 12 1 4.5432 7.7536 4.1259 13 1 5.4004 6.8153 6.1908 14 1 6.6430 6.5406 4.1261 15 6 2.1390 -1.1672 -0.0005 16 8 3.3517 -1.1670 -0.0010 17 6 1.3855 -2.4722 -0.0005 18 1 0.4480 -2.4735 0.5557 19 6 1.4552 -3.3272 -1.2675 20 1 1.9868 -2.9461 -2.1395 21 6 0.3467 -4.3738 -1.5026 22 6 0.8601 -5.6409 -0.7744 23 6 1.5317 -5.0581 0.4929 24 6 2.2085 -3.7620 0.0009 25 1 3.2950 -3.7014 0.0634 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6084 2.0285 -0.5138 30 1 3.1499 1.1385 -0.5139 31 1 3.0416 0.9509 1.9562 32 1 1.5001 1.8408 1.9562 33 1 2.6293 3.7951 0.9284 34 1 4.1704 2.9045 0.9286 35 1 3.1463 2.9127 3.5609 36 1 4.1009 4.5640 6.2975 37 1 -0.5939 -4.0378 -1.0662 38 1 0.2258 -4.5688 -2.5682 39 1 0.0306 -6.2952 -0.5064 40 1 1.5885 -6.1706 -1.3883 41 1 2.2756 -5.7523 0.8836 42 1 0.7828 -4.8328 1.2522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498530992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:16 Heat of formation + Delta-G solvation = -6.404981 kcal Electronic energy + Delta-G solvation = -19849.028699 eV Core-core repulsion = 16829.765941 eV Total energy + Delta-G solvation = -3019.262758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63744 -38.71246 -36.08248 -34.76993 -32.48408 -31.79016 -29.77075 -28.55267 -26.91501 -25.89444 -23.84116 -22.34046 -21.05072 -20.70903 -19.96206 -19.09599 -17.44051 -17.00476 -16.37071 -15.56559 -15.36971 -14.82212 -14.45616 -14.37233 -13.62427 -13.51887 -13.30252 -13.12037 -13.02824 -12.94072 -12.46446 -11.91456 -11.86022 -11.75632 -11.56165 -11.46117 -11.18123 -10.88708 -10.80374 -10.71439 -10.40287 -10.30869 -10.08813 -10.04053 -9.71595 -9.62543 -8.81807 -8.63072 -6.86873 -5.71144 -2.99913 2.41345 2.91734 3.47876 3.48809 3.51534 3.53179 4.10471 4.40151 4.43904 4.63862 4.67166 4.85169 4.90927 4.99194 5.09382 5.13881 5.22340 5.27499 5.30009 5.39058 5.48775 5.50493 5.58184 5.61298 5.68403 5.73716 5.75924 5.79174 5.96700 5.97144 6.11118 6.13252 6.34658 6.43579 6.57867 6.91161 6.93718 7.36940 7.73941 8.19681 8.47833 9.58406 10.17301 10.52074 11.51961 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041305 B = 0.002956 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.720175 B = 9468.420451 C = 9719.074417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.119 3.881 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.541 3.459 16 O -0.534 6.534 17 C -0.161 4.161 18 H 0.121 0.879 19 C -0.139 4.139 20 H 0.113 0.887 21 C -0.095 4.095 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.131 4.131 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.761 -19.050 -14.820 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.344 5.344 3 C -0.004 4.004 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.329 3.671 16 O -0.410 6.410 17 C -0.182 4.182 18 H 0.139 0.861 19 C -0.158 4.158 20 H 0.131 0.869 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.135 4.135 24 C -0.150 4.150 25 H 0.140 0.860 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.029 -18.884 -14.848 26.432 hybrid contribution 0.281 0.906 0.608 1.127 sum -10.747 -17.977 -14.240 25.327 Atomic orbital electron populations 1.21822 0.79569 1.03375 1.01708 1.47808 1.07043 1.06158 1.73392 1.21503 0.97460 0.83382 0.98016 1.22054 1.01057 0.98971 0.95693 1.20541 0.96033 0.91883 0.88704 1.42352 1.68312 1.25984 1.01115 1.19210 1.27809 0.98180 0.91798 0.91201 1.24754 1.01769 0.99088 0.95558 1.69658 1.51584 1.38995 0.98167 0.86239 0.79707 0.83249 0.76823 1.21286 1.21687 1.21251 1.19586 0.87323 0.84280 0.75958 1.90716 1.13783 1.87157 1.49375 1.22413 1.01851 0.90394 1.03581 0.86126 1.23222 1.01135 0.99702 0.91746 0.86888 1.21996 0.96916 0.93476 1.00868 1.22692 0.99960 0.97157 0.96285 1.21993 0.99388 0.94598 0.97493 1.23262 0.99319 0.91841 1.00561 0.85978 0.92584 0.91106 0.90668 0.90463 0.89812 0.91596 0.92009 0.96404 0.96218 0.78322 0.93492 0.91171 0.90922 0.91165 0.91131 0.90777 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.27 59.85 0.61 1.30 16 2 N -0.61 -7.85 2.87 -181.57 -0.52 -8.37 16 3 C 0.12 1.72 5.41 -4.04 -0.02 1.70 16 4 C -0.14 -2.47 5.65 -26.74 -0.15 -2.62 16 5 C 0.16 3.36 6.26 -4.04 -0.03 3.34 16 6 N -0.73 -19.85 5.60 -59.91 -0.34 -20.19 16 7 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 10 N -0.94 -29.35 13.06 55.49 0.72 -28.63 16 11 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.54 7.75 7.46 -10.99 -0.08 7.67 16 16 O -0.53 -9.88 15.90 5.56 0.09 -9.79 16 17 C -0.16 -1.71 4.84 -91.77 -0.44 -2.15 16 18 H 0.12 1.05 6.44 -51.93 -0.33 0.71 16 19 C -0.14 -1.26 6.64 -89.54 -0.59 -1.85 16 20 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 21 C -0.10 -0.62 6.63 -25.07 -0.17 -0.79 16 22 C -0.12 -0.77 6.91 -24.77 -0.17 -0.94 16 23 C -0.10 -0.74 6.62 -25.11 -0.17 -0.91 16 24 C -0.13 -1.34 6.39 -89.54 -0.57 -1.91 16 25 H 0.12 1.48 7.78 -51.93 -0.40 1.08 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.51 6.00 -51.93 -0.31 0.20 16 28 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.08 0.94 8.07 -51.93 -0.42 0.53 16 30 H 0.08 1.33 7.42 -51.93 -0.39 0.94 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.38 10.88 7.67 -40.82 -0.31 10.57 16 36 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -34.49 342.15 -9.14 -43.63 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.21 Total: 5.02 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.03 Total: -4.90 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.13 Total: -57.19 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.49 -9.14 -43.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498530992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.228 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds