Wall clock time and date at job start Mon Mar 30 2020 01:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99658 * 2 1 4 4 C 1.52992 * 109.47485 * 90.00211 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99992 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99834 * 0.02562 * 7 6 5 9 9 C 1.38801 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46725 * 59.99976 * 11 9 7 13 13 H 1.48498 * 109.47172 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46920 * 300.00189 * 11 9 7 15 15 C 1.34777 * 120.00297 * 180.02562 * 2 1 3 16 16 O 1.21276 * 119.99683 * 179.97438 * 15 2 1 17 17 C 1.50695 * 119.99811 * 359.97438 * 15 2 1 18 18 H 1.09005 * 115.52894 * 325.59242 * 17 15 2 19 19 C 1.53005 * 117.45940 * 111.08310 * 17 15 2 20 20 H 1.09002 * 119.29730 * 356.29076 * 19 17 15 21 21 C 1.54262 * 118.19993 * 201.21820 * 19 17 15 22 22 C 1.54894 * 104.19282 * 272.21127 * 21 19 17 23 23 C 1.54821 * 102.74818 * 37.91331 * 22 21 19 24 24 C 1.53000 * 117.45907 * 180.08663 * 17 15 2 25 25 H 1.08996 * 119.29977 * 3.71021 * 24 17 15 26 26 H 1.09000 * 109.46983 * 90.00199 * 1 2 3 27 27 H 1.08998 * 109.46888 * 210.00036 * 1 2 3 28 28 H 1.09001 * 109.47128 * 330.00022 * 1 2 3 29 29 H 1.09002 * 109.47280 * 329.99916 * 3 2 1 30 30 H 1.09001 * 109.46702 * 210.00108 * 3 2 1 31 31 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 32 32 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00803 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.48571 * 30.88634 * 21 19 17 38 38 H 1.09001 * 110.48920 * 153.53521 * 21 19 17 39 39 H 1.08995 * 110.75635 * 156.25851 * 22 21 19 40 40 H 1.09003 * 110.75186 * 279.62410 * 22 21 19 41 41 H 1.08998 * 110.47050 * 203.39942 * 23 22 21 42 42 H 1.09003 * 110.48330 * 80.77263 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2180 3.0353 1.4424 6 7 3.4617 3.4585 2.8236 7 6 4.1356 4.6240 3.0738 8 1 4.4871 5.2314 2.2529 9 6 4.3669 5.0247 4.3825 10 7 3.9390 4.2843 5.3829 11 14 5.2856 6.6150 4.7238 12 1 4.5432 7.7536 4.1259 13 1 5.4004 6.8153 6.1908 14 1 6.6430 6.5406 4.1261 15 6 2.1390 -1.1672 -0.0005 16 8 3.3517 -1.1670 -0.0010 17 6 1.3855 -2.4722 -0.0005 18 1 0.4480 -2.4735 0.5557 19 6 1.4552 -3.3272 -1.2675 20 1 1.9868 -2.9461 -2.1395 21 6 0.3467 -4.3738 -1.5026 22 6 0.8601 -5.6409 -0.7744 23 6 1.5317 -5.0581 0.4929 24 6 2.2085 -3.7620 0.0009 25 1 3.2950 -3.7014 0.0634 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6084 2.0285 -0.5138 30 1 3.1499 1.1385 -0.5139 31 1 3.0416 0.9509 1.9562 32 1 1.5001 1.8408 1.9562 33 1 2.6293 3.7951 0.9284 34 1 4.1704 2.9045 0.9286 35 1 3.1463 2.9127 3.5609 36 1 4.1009 4.5640 6.2975 37 1 -0.5939 -4.0378 -1.0662 38 1 0.2258 -4.5688 -2.5682 39 1 0.0306 -6.2952 -0.5064 40 1 1.5885 -6.1706 -1.3883 41 1 2.2756 -5.7523 0.8836 42 1 0.7828 -4.8328 1.2522 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498530992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:15 Heat of formation + Delta-G solvation = -28.073096 kcal Electronic energy + Delta-G solvation = -19849.968299 eV Core-core repulsion = 16829.765941 eV Total energy + Delta-G solvation = -3020.202358 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56165 -39.60795 -37.51899 -36.42504 -34.14244 -32.76985 -31.50099 -29.13553 -27.99887 -27.22549 -25.43270 -23.74310 -22.49367 -21.48539 -20.67381 -20.08810 -19.18510 -18.40056 -17.46999 -16.68022 -16.51214 -16.23302 -15.74129 -15.57051 -15.29470 -15.01881 -14.36727 -14.15498 -13.95755 -13.86281 -13.58163 -13.40290 -13.03953 -12.76812 -12.73180 -12.48887 -12.42280 -12.27371 -12.11576 -11.98416 -11.86739 -11.83134 -11.68413 -11.13397 -10.96686 -10.91512 -10.62205 -9.71977 -9.06308 -7.98579 -5.29323 1.37656 1.44933 1.49486 1.55597 1.92916 2.53936 2.68255 3.33694 3.34699 3.68879 3.75510 3.82268 3.86471 4.05050 4.18552 4.22039 4.24222 4.35506 4.46272 4.49920 4.52566 4.57184 4.64893 4.70242 4.73988 4.82763 4.85201 4.93996 5.00562 5.16464 5.22352 5.23133 5.24504 5.26350 5.28059 5.44628 5.50289 5.51924 6.23123 6.34973 7.11567 7.28473 8.02998 8.27093 9.25196 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.041305 B = 0.002956 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.720175 B = 9468.420451 C = 9719.074417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.126 3.874 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.252 4.252 8 H 0.078 0.922 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.981 3.019 12 H -0.273 1.273 13 H -0.293 1.293 14 H -0.278 1.278 15 C 0.529 3.471 16 O -0.590 6.590 17 C -0.163 4.163 18 H 0.147 0.853 19 C -0.125 4.125 20 H 0.101 0.899 21 C -0.089 4.089 22 C -0.119 4.119 23 C -0.093 4.093 24 C -0.150 4.150 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.036 0.964 34 H 0.012 0.988 35 H 0.372 0.628 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 -19.288 -16.059 28.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.341 5.341 3 C 0.003 3.997 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.384 4.384 8 H 0.096 0.904 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.199 1.199 13 H -0.219 1.219 14 H -0.204 1.204 15 C 0.319 3.681 16 O -0.470 6.470 17 C -0.183 4.183 18 H 0.164 0.836 19 C -0.144 4.144 20 H 0.119 0.881 21 C -0.126 4.126 22 C -0.156 4.156 23 C -0.131 4.131 24 C -0.169 4.169 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.127 0.873 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.030 0.970 35 H 0.203 0.797 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.203 -19.121 -16.139 28.292 hybrid contribution 0.955 0.965 0.944 1.654 sum -12.248 -18.156 -15.195 26.656 Atomic orbital electron populations 1.22135 0.76602 1.04656 1.03641 1.47929 1.08838 1.05050 1.72281 1.21326 0.97777 0.85130 0.95492 1.21853 1.00119 0.96112 0.97903 1.20697 0.96389 0.94012 0.86062 1.42606 1.68247 1.25482 1.02909 1.19655 1.27560 0.98892 0.92270 0.90449 1.25684 1.03152 1.02833 0.95371 1.69828 1.53155 1.40948 0.98339 0.85114 0.78517 0.79164 0.76371 1.19856 1.21883 1.20449 1.20343 0.86991 0.85882 0.74887 1.90685 1.16319 1.88041 1.52004 1.22413 1.02208 0.88364 1.05345 0.83590 1.23322 1.01512 0.99013 0.90507 0.88076 1.22046 0.96315 0.92305 1.01935 1.22695 1.00433 0.97236 0.95259 1.22019 0.99468 0.93083 0.98517 1.23310 0.98044 0.93108 1.02435 0.89144 0.90260 0.89258 0.90040 0.87296 0.91744 0.94718 0.91242 0.94635 0.96958 0.79666 0.93850 0.89585 0.89629 0.89183 0.91206 0.90782 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.27 127.77 1.31 2.35 16 2 N -0.61 -15.07 2.87 -846.76 -2.43 -17.51 16 3 C 0.13 3.58 5.41 86.38 0.47 4.05 16 4 C -0.12 -4.34 5.65 30.59 0.17 -4.17 16 5 C 0.16 6.70 6.26 86.38 0.54 7.24 16 6 N -0.75 -41.21 5.60 -343.45 -1.92 -43.14 16 7 C -0.25 -14.89 9.99 84.03 0.84 -14.05 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 10 N -0.97 -61.95 13.06 21.65 0.28 -61.67 16 11 Si 0.98 47.55 29.55 68.60 2.03 49.57 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 14 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 15 C 0.53 15.38 7.46 87.66 0.65 16.03 16 16 O -0.59 -23.17 15.90 -3.02 -0.05 -23.22 16 17 C -0.16 -3.29 4.84 -11.54 -0.06 -3.34 16 18 H 0.15 2.14 6.44 -2.38 -0.02 2.13 16 19 C -0.12 -2.10 6.64 -10.09 -0.07 -2.17 16 20 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 21 C -0.09 -0.88 6.63 31.67 0.21 -0.67 16 22 C -0.12 -1.15 6.91 31.86 0.22 -0.93 16 23 C -0.09 -1.29 6.62 31.65 0.21 -1.08 16 24 C -0.15 -3.09 6.39 -10.09 -0.06 -3.15 16 25 H 0.09 2.42 7.78 -2.39 -0.02 2.40 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 0.99 6.00 -2.39 -0.01 0.97 16 28 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 29 H 0.11 2.41 8.07 -2.39 -0.02 2.39 16 30 H 0.06 2.09 7.42 -2.39 -0.02 2.08 16 31 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.37 21.72 7.67 -92.71 -0.71 21.01 16 36 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.80 342.15 3.09 -73.71 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.28 Total: 26.37 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.90 Total: -4.13 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -4.07 Total: -122.31 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -76.80 3.09 -73.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498530992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.637 kcal (2) G-P(sol) polarization free energy of solvation -76.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds