Wall clock time and date at job start Mon Mar 30 2020 01:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.52998 * 109.46931 * 269.99325 * 3 2 1 5 5 C 1.52996 * 109.47099 * 180.02562 * 4 3 2 6 6 N 1.46509 * 109.47105 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00003 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00154 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00246 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99531 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00234 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.46994 * 90.00219 * 11 9 7 13 13 H 1.48497 * 109.47136 * 209.99766 * 11 9 7 14 14 H 1.48499 * 109.47265 * 330.00269 * 11 9 7 15 15 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 2 1 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 2 1 18 18 C 1.53885 * 113.59016 * 279.21302 * 17 15 2 19 19 C 1.53415 * 86.82453 * 220.45890 * 18 17 15 20 20 C 1.52463 * 128.60562 * 165.10053 * 19 18 17 21 21 C 1.52466 * 128.51829 * 245.01461 * 19 18 17 22 22 C 1.53253 * 87.72405 * 25.01953 * 19 18 17 23 23 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 24 24 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 25 25 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 26 26 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 27 27 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 28 28 H 1.09002 * 109.47544 * 300.00715 * 4 3 2 29 29 H 1.09001 * 109.47139 * 60.00533 * 4 3 2 30 30 H 1.08997 * 109.47528 * 300.00215 * 5 4 3 31 31 H 1.08999 * 109.47347 * 60.00694 * 5 4 3 32 32 H 0.96993 * 119.99829 * 0.02562 * 6 5 4 33 33 H 0.97005 * 119.99843 * 179.97438 * 10 9 7 34 34 H 1.09003 * 112.83083 * 50.33265 * 17 15 2 35 35 H 1.09005 * 113.64707 * 334.92960 * 18 17 15 36 36 H 1.08998 * 113.64607 * 105.93290 * 18 17 15 37 37 H 1.09002 * 117.51282 * 224.96126 * 20 19 18 38 38 H 1.08999 * 117.51532 * 10.05932 * 20 19 18 39 39 H 1.08995 * 117.51322 * 349.80248 * 21 19 18 40 40 H 1.08998 * 117.51152 * 134.86778 * 21 19 18 41 41 H 1.09004 * 113.64369 * 220.49188 * 22 19 18 42 42 H 1.08996 * 113.73098 * 89.49527 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2181 3.0349 -1.4425 6 7 3.4629 3.4574 -2.8239 7 6 4.1362 4.6233 -3.0741 8 1 4.4871 5.2312 -2.2532 9 6 4.3677 5.0239 -4.3829 10 7 3.9396 4.2834 -5.3832 11 14 5.2867 6.6140 -4.7243 12 1 6.7425 6.3346 -4.8148 13 1 4.8133 7.1937 -6.0068 14 1 5.0352 7.5775 -3.6226 15 6 2.1389 -1.1672 0.0005 16 8 3.3516 -1.1673 0.0056 17 6 1.3853 -2.4723 0.0005 18 6 0.8812 -2.8924 1.3925 19 6 1.2894 -4.3222 1.0148 20 6 1.4611 -5.5341 1.9239 21 6 0.3985 -5.5443 0.8214 22 6 2.2984 -3.7106 0.0368 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5139 28 1 3.0416 0.9505 -1.9563 29 1 1.5002 1.8406 -1.9564 30 1 2.6294 3.7948 -0.9287 31 1 4.1706 2.9042 -0.9289 32 1 3.1475 2.9117 -3.5610 33 1 4.1011 4.5635 -6.2978 34 1 0.6187 -2.5181 -0.7731 35 1 1.4639 -2.4738 2.2132 36 1 -0.1930 -2.7642 1.5255 37 1 2.3461 -6.1531 1.7761 38 1 1.1170 -5.4435 2.9542 39 1 -0.6445 -5.4604 1.1266 40 1 0.5841 -6.1696 -0.0518 41 1 2.3585 -4.2374 -0.9156 42 1 3.2766 -3.5197 0.4779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498611394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:51 Heat of formation + Delta-G solvation = 20.511243 kcal Electronic energy + Delta-G solvation = -19837.470090 eV Core-core repulsion = 16819.374506 eV Total energy + Delta-G solvation = -3018.095583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69026 -38.69583 -36.10077 -34.78371 -33.87925 -32.13574 -29.81375 -26.91073 -26.16821 -25.96638 -23.99241 -22.79166 -22.27662 -20.85904 -19.04154 -18.62154 -17.28182 -17.00151 -16.23230 -15.80978 -15.43828 -14.90688 -14.71635 -14.45236 -14.03663 -13.29280 -13.14342 -13.07523 -12.80284 -12.63059 -12.52707 -12.21221 -11.98118 -11.82139 -11.75934 -11.65481 -10.88961 -10.81783 -10.70396 -10.61893 -10.57723 -10.34684 -10.04936 -9.98261 -9.69742 -9.54471 -8.82435 -8.61652 -6.87037 -5.71677 -3.00233 2.62850 2.98936 3.44227 3.47136 3.51655 3.53618 4.02831 4.24091 4.39015 4.47513 4.56012 4.63912 4.76949 4.93930 5.11680 5.22284 5.29574 5.30695 5.34428 5.45294 5.49032 5.51233 5.53430 5.56883 5.61244 5.74413 5.75028 5.80591 5.94974 5.96901 6.08240 6.14116 6.34838 6.43727 6.59370 6.91284 6.93904 7.39596 7.74213 8.21990 8.47382 9.58062 10.17029 10.51752 11.51533 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.002883 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.678422 B = 9708.286741 C = 9876.655005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.614 5.614 3 C 0.118 3.882 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.520 3.480 16 O -0.534 6.534 17 C -0.131 4.131 18 C -0.079 4.079 19 C -0.164 4.164 20 C -0.166 4.166 21 C -0.151 4.151 22 C -0.077 4.077 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 -18.490 15.338 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C -0.005 4.005 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.308 3.692 16 O -0.410 6.410 17 C -0.152 4.152 18 C -0.117 4.117 19 C -0.164 4.164 20 C -0.203 4.203 21 C -0.188 4.188 22 C -0.114 4.114 23 H 0.073 0.927 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.962 -18.308 15.370 26.298 hybrid contribution 0.219 0.769 -0.629 1.017 sum -10.743 -17.540 14.741 25.305 Atomic orbital electron populations 1.21804 0.79691 1.03396 1.01601 1.47906 1.06965 1.06355 1.73485 1.21489 0.97472 0.83580 0.97937 1.22049 1.01008 0.98932 0.95748 1.20543 0.96035 0.91920 0.88678 1.42360 1.68288 1.25998 1.01130 1.19256 1.27696 0.98137 0.91811 0.91149 1.24759 1.01790 0.99113 0.95566 1.69672 1.51591 1.38984 0.98140 0.86163 0.79539 0.83085 0.77254 1.21711 1.21787 1.20767 1.20463 0.87904 0.85037 0.75826 1.90709 1.13902 1.87188 1.49231 1.22616 1.00040 0.92461 1.00053 1.22407 1.01079 0.92799 0.95367 1.22198 1.02111 0.89757 1.02292 1.22799 1.01006 1.00639 0.95827 1.22791 0.96197 0.98980 1.00861 1.22390 0.97420 0.93064 0.98543 0.92685 0.90708 0.91137 0.90595 0.89841 0.91625 0.92050 0.96417 0.96222 0.78332 0.93553 0.86875 0.89347 0.90676 0.88619 0.88730 0.88615 0.88535 0.90912 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 10.19 59.85 0.61 1.27 16 2 N -0.61 -7.60 2.87 -181.57 -0.52 -8.13 16 3 C 0.12 1.68 5.41 -4.04 -0.02 1.65 16 4 C -0.14 -2.44 5.65 -26.73 -0.15 -2.59 16 5 C 0.16 3.34 6.26 -4.04 -0.03 3.32 16 6 N -0.73 -19.79 5.60 -59.90 -0.34 -20.12 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 10 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 11 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.52 7.13 7.20 -10.98 -0.08 7.05 16 16 O -0.53 -9.61 15.48 5.56 0.09 -9.52 16 17 C -0.13 -1.29 2.93 -90.85 -0.27 -1.56 16 18 C -0.08 -0.64 7.56 -26.06 -0.20 -0.83 16 19 C -0.16 -1.34 3.09 -154.71 -0.48 -1.81 16 20 C -0.17 -1.18 10.53 -26.94 -0.28 -1.47 16 21 C -0.15 -1.01 10.53 -26.94 -0.28 -1.29 16 22 C -0.08 -0.78 7.42 -26.14 -0.19 -0.97 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 25 H 0.07 0.48 6.25 -51.93 -0.32 0.16 16 26 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 10.84 7.67 -40.82 -0.31 10.53 16 33 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.11 0.95 7.02 -51.93 -0.36 0.58 16 35 H 0.09 0.79 8.09 -51.93 -0.42 0.36 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.19 7.44 -51.93 -0.39 0.80 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -34.37 345.88 -8.70 -43.08 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.23 Total: 4.96 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.62 Total: -4.95 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.13 Total: -56.82 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.37 -8.70 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498611394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.589 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds