Wall clock time and date at job start Mon Mar 30 2020 01:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.52998 * 109.46931 * 269.99325 * 3 2 1 5 5 C 1.52996 * 109.47099 * 180.02562 * 4 3 2 6 6 N 1.46509 * 109.47105 * 179.97438 * 5 4 3 7 7 C 1.36934 * 120.00003 * 179.97438 * 6 5 4 8 8 H 1.08005 * 120.00154 * 0.02562 * 7 6 5 9 9 C 1.38814 * 120.00246 * 180.02562 * 7 6 5 10 10 N 1.31617 * 119.99531 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00234 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.46994 * 90.00219 * 11 9 7 13 13 H 1.48497 * 109.47136 * 209.99766 * 11 9 7 14 14 H 1.48499 * 109.47265 * 330.00269 * 11 9 7 15 15 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 2 1 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 2 1 18 18 C 1.53885 * 113.59016 * 279.21302 * 17 15 2 19 19 C 1.53415 * 86.82453 * 220.45890 * 18 17 15 20 20 C 1.52463 * 128.60562 * 165.10053 * 19 18 17 21 21 C 1.52466 * 128.51829 * 245.01461 * 19 18 17 22 22 C 1.53253 * 87.72405 * 25.01953 * 19 18 17 23 23 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 24 24 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 25 25 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 26 26 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 27 27 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 28 28 H 1.09002 * 109.47544 * 300.00715 * 4 3 2 29 29 H 1.09001 * 109.47139 * 60.00533 * 4 3 2 30 30 H 1.08997 * 109.47528 * 300.00215 * 5 4 3 31 31 H 1.08999 * 109.47347 * 60.00694 * 5 4 3 32 32 H 0.96993 * 119.99829 * 0.02562 * 6 5 4 33 33 H 0.97005 * 119.99843 * 179.97438 * 10 9 7 34 34 H 1.09003 * 112.83083 * 50.33265 * 17 15 2 35 35 H 1.09005 * 113.64707 * 334.92960 * 18 17 15 36 36 H 1.08998 * 113.64607 * 105.93290 * 18 17 15 37 37 H 1.09002 * 117.51282 * 224.96126 * 20 19 18 38 38 H 1.08999 * 117.51532 * 10.05932 * 20 19 18 39 39 H 1.08995 * 117.51322 * 349.80248 * 21 19 18 40 40 H 1.08998 * 117.51152 * 134.86778 * 21 19 18 41 41 H 1.09004 * 113.64369 * 220.49188 * 22 19 18 42 42 H 1.08996 * 113.73098 * 89.49527 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2181 3.0349 -1.4425 6 7 3.4629 3.4574 -2.8239 7 6 4.1362 4.6233 -3.0741 8 1 4.4871 5.2312 -2.2532 9 6 4.3677 5.0239 -4.3829 10 7 3.9396 4.2834 -5.3832 11 14 5.2867 6.6140 -4.7243 12 1 6.7425 6.3346 -4.8148 13 1 4.8133 7.1937 -6.0068 14 1 5.0352 7.5775 -3.6226 15 6 2.1389 -1.1672 0.0005 16 8 3.3516 -1.1673 0.0056 17 6 1.3853 -2.4723 0.0005 18 6 0.8812 -2.8924 1.3925 19 6 1.2894 -4.3222 1.0148 20 6 1.4611 -5.5341 1.9239 21 6 0.3985 -5.5443 0.8214 22 6 2.2984 -3.7106 0.0368 23 1 -0.3634 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5139 28 1 3.0416 0.9505 -1.9563 29 1 1.5002 1.8406 -1.9564 30 1 2.6294 3.7948 -0.9287 31 1 4.1706 2.9042 -0.9289 32 1 3.1475 2.9117 -3.5610 33 1 4.1011 4.5635 -6.2978 34 1 0.6187 -2.5181 -0.7731 35 1 1.4639 -2.4738 2.2132 36 1 -0.1930 -2.7642 1.5255 37 1 2.3461 -6.1531 1.7761 38 1 1.1170 -5.4435 2.9542 39 1 -0.6445 -5.4604 1.1266 40 1 0.5841 -6.1696 -0.0518 41 1 2.3585 -4.2374 -0.9156 42 1 3.2766 -3.5197 0.4779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498611394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:50 Heat of formation + Delta-G solvation = -0.996071 kcal Electronic energy + Delta-G solvation = -19838.402717 eV Core-core repulsion = 16819.374506 eV Total energy + Delta-G solvation = -3019.028210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.57728 -39.54636 -37.50950 -36.39527 -34.67608 -33.91116 -31.59496 -27.97121 -27.35995 -26.72526 -25.56753 -23.83767 -23.25695 -22.43555 -19.98648 -19.32315 -19.16883 -18.21318 -17.33207 -16.66324 -16.55919 -16.08879 -15.95293 -15.77131 -15.37931 -15.16783 -14.77964 -14.01791 -13.62441 -13.56159 -13.41684 -13.36438 -13.21461 -12.89756 -12.78213 -12.64954 -12.51643 -12.37826 -12.30053 -12.07559 -11.83554 -11.81832 -11.28396 -11.24720 -10.97359 -10.70036 -10.48512 -9.66754 -9.05753 -7.98550 -5.28957 1.45153 1.48384 1.56741 1.59440 2.03727 2.54250 2.85307 3.34786 3.38903 3.49474 3.65729 3.78322 3.85336 3.91010 4.00636 4.15734 4.25014 4.32448 4.43804 4.51865 4.60017 4.70727 4.74989 4.75619 4.79379 4.82328 4.84129 4.88119 4.96435 5.02000 5.06259 5.25845 5.26351 5.27314 5.31432 5.34749 5.45399 5.56836 6.23505 6.42121 7.18790 7.28824 8.03575 8.27510 9.25474 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.045990 B = 0.002883 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.678422 B = 9708.286741 C = 9876.655005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.125 3.875 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.510 3.490 16 O -0.590 6.590 17 C -0.124 4.124 18 C -0.067 4.067 19 C -0.172 4.172 20 C -0.170 4.170 21 C -0.137 4.137 22 C -0.088 4.088 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.063 0.937 28 H 0.034 0.966 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.012 0.988 32 H 0.372 0.628 33 H 0.253 0.747 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 -18.542 16.607 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.344 5.344 3 C 0.002 3.998 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.382 4.382 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.300 3.700 16 O -0.470 6.470 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.173 4.173 20 C -0.207 4.207 21 C -0.173 4.173 22 C -0.126 4.126 23 H 0.098 0.902 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.203 0.797 33 H 0.061 0.939 34 H 0.153 0.847 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.137 -18.362 16.691 28.077 hybrid contribution 0.886 0.739 -0.986 1.518 sum -12.251 -17.623 15.705 26.596 Atomic orbital electron populations 1.22124 0.76729 1.04637 1.03627 1.48020 1.08751 1.05193 1.72440 1.21297 0.97776 0.85414 0.95338 1.21852 1.00048 0.96040 0.98019 1.20703 0.96394 0.94091 0.86006 1.42617 1.68206 1.25478 1.02943 1.19691 1.27397 0.98842 0.92249 0.90445 1.25682 1.03191 1.02840 0.95398 1.69837 1.53179 1.40937 0.98334 0.85049 0.77856 0.79049 0.77250 1.21454 1.21811 1.19054 1.21241 0.87539 0.86552 0.74657 1.90681 1.16467 1.88042 1.51827 1.22693 0.99941 0.89748 1.02143 1.22341 1.02434 0.92176 0.93493 1.22131 1.02254 0.90447 1.02421 1.22900 1.01438 0.99794 0.96559 1.22904 0.96764 0.97144 1.00522 1.22360 0.96921 0.94120 0.99159 0.90195 0.90283 0.89189 0.87545 0.91801 0.94671 0.91314 0.94714 0.96965 0.79663 0.93873 0.84654 0.90561 0.87839 0.88927 0.87726 0.86832 0.88189 0.90903 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.19 127.77 1.30 2.25 16 2 N -0.61 -14.39 2.87 -846.76 -2.43 -16.83 16 3 C 0.13 3.47 5.41 86.38 0.47 3.94 16 4 C -0.12 -4.27 5.65 30.59 0.17 -4.10 16 5 C 0.15 6.64 6.26 86.38 0.54 7.18 16 6 N -0.75 -41.02 5.60 -343.44 -1.92 -42.94 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 10 N -0.97 -61.83 13.06 21.65 0.28 -61.54 16 11 Si 0.98 47.49 29.55 68.60 2.03 49.51 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.51 14.01 7.20 87.66 0.63 14.64 16 16 O -0.59 -22.38 15.48 -3.01 -0.05 -22.42 16 17 C -0.12 -2.31 2.93 -10.94 -0.03 -2.34 16 18 C -0.07 -0.93 7.56 31.03 0.23 -0.70 16 19 C -0.17 -2.54 3.09 -52.31 -0.16 -2.70 16 20 C -0.17 -2.14 10.53 30.46 0.32 -1.81 16 21 C -0.14 -1.44 10.53 30.46 0.32 -1.12 16 22 C -0.09 -1.80 7.42 30.98 0.23 -1.57 16 23 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.08 1.04 8.07 -2.39 -0.02 1.02 16 25 H 0.09 0.88 6.25 -2.39 -0.01 0.87 16 26 H 0.11 2.31 8.07 -2.39 -0.02 2.29 16 27 H 0.06 2.04 7.42 -2.38 -0.02 2.02 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.37 21.62 7.67 -92.71 -0.71 20.91 16 33 H 0.25 15.43 8.31 -92.70 -0.77 14.66 16 34 H 0.14 1.90 7.02 -2.39 -0.02 1.88 16 35 H 0.08 1.26 8.09 -2.38 -0.02 1.24 16 36 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.85 7.44 -2.39 -0.02 1.83 16 Total: -1.00 -76.25 345.88 3.52 -72.73 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.28 Total: 25.96 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.33 Total: -4.47 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -4.07 Total: -121.31 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -76.25 3.52 -72.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498611394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.734 kcal (2) G-P(sol) polarization free energy of solvation -76.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds