Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00241 * 2 1 4 4 C 1.52991 * 109.47415 * 124.99619 * 3 2 1 5 5 C 1.50697 * 112.85334 * 295.14138 * 4 3 2 6 6 O 1.21281 * 120.00060 * 108.58381 * 5 4 3 7 7 N 1.34780 * 120.00021 * 288.85767 * 5 4 3 8 8 C 1.46499 * 120.00190 * 174.53178 * 7 5 4 9 9 C 1.52995 * 109.47334 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47334 * 180.02562 * 9 8 7 11 11 C 1.46499 * 120.00247 * 270.00333 * 10 9 8 12 12 C 1.36940 * 119.99780 * 89.99894 * 10 9 8 13 13 H 1.08002 * 119.99705 * 23.37980 * 12 10 9 14 14 C 1.38806 * 120.00138 * 203.37054 * 12 10 9 15 15 N 1.31615 * 119.99811 * 12.68584 * 14 12 10 16 16 Si 1.86798 * 120.00332 * 192.67811 * 14 12 10 17 17 H 1.48505 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47182 * 120.00182 * 16 14 12 19 19 H 1.48504 * 109.47137 * 240.00792 * 16 14 12 20 20 C 1.53785 * 113.69027 * 66.40569 * 4 3 2 21 21 C 1.53787 * 87.07822 * 89.13014 * 20 4 3 22 22 C 1.53773 * 87.08388 * 25.43441 * 21 20 4 23 23 H 1.07999 * 120.00222 * 180.02562 * 1 2 3 24 24 H 1.07997 * 119.99414 * 0.02562 * 1 2 3 25 25 H 1.07996 * 119.99899 * 179.97438 * 2 1 3 26 26 H 1.09008 * 109.46883 * 4.99824 * 3 2 1 27 27 H 1.08995 * 109.47090 * 245.00370 * 3 2 1 28 28 H 0.97001 * 119.99645 * 354.53673 * 7 5 4 29 29 H 1.09004 * 109.47306 * 300.00904 * 8 7 5 30 30 H 1.09006 * 109.46956 * 60.00405 * 8 7 5 31 31 H 1.09004 * 109.46996 * 300.00631 * 9 8 7 32 32 H 1.09006 * 109.46909 * 60.00203 * 9 8 7 33 33 H 1.08998 * 109.47014 * 95.20681 * 11 10 9 34 34 H 1.09003 * 109.47097 * 215.20723 * 11 10 9 35 35 H 1.09005 * 109.46831 * 335.20334 * 11 10 9 36 36 H 0.97001 * 120.00276 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61923 * 203.67341 * 20 4 3 38 38 H 1.09000 * 113.61336 * 334.58371 * 20 4 3 39 39 H 1.09007 * 113.61070 * 270.88500 * 21 20 4 40 40 H 1.08996 * 113.61214 * 139.98602 * 21 20 4 41 41 H 1.08997 * 113.62003 * 220.02493 * 22 21 20 42 42 H 1.08998 * 113.61859 * 89.11274 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.3344 1.3207 2.5157 6 8 2.3731 0.3282 3.2118 7 7 1.6601 2.4105 2.9330 8 6 0.8801 2.3595 4.1720 9 6 0.2181 3.7174 4.4142 10 7 -0.5614 3.6665 5.6536 11 6 -1.9689 3.2619 5.6176 12 6 0.0257 3.9972 6.8457 13 1 0.8967 4.6356 6.8600 14 6 -0.4987 3.5120 8.0358 15 7 -1.3926 2.5462 8.0157 16 14 0.0644 4.2296 9.6660 17 1 1.0677 5.2958 9.4173 18 1 -1.1018 4.8053 10.3826 19 1 0.6748 3.1584 10.4939 20 6 4.1705 0.3017 1.0726 21 6 4.9705 1.3787 0.3209 22 6 4.1169 2.4197 1.0641 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 1.6912 3.2287 2.4128 29 1 0.1117 1.5911 4.0862 30 1 1.5395 2.1222 5.0069 31 1 0.9863 4.4860 4.4998 32 1 -0.4414 3.9542 3.5792 33 1 -2.0464 2.1967 5.8354 34 1 -2.5286 3.8268 6.3631 35 1 -2.3790 3.4612 4.6275 36 1 -1.7588 2.2068 8.8473 37 1 4.6046 0.0268 2.0339 38 1 3.9178 -0.5627 0.4585 39 1 4.8083 1.3702 -0.7570 40 1 6.0261 1.4065 0.5909 41 1 3.8207 3.2652 0.4432 42 1 4.5362 2.7239 2.0231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567302608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = 17.362316 kcal Electronic energy + Delta-G solvation = -20604.986301 eV Core-core repulsion = 17586.754169 eV Total energy + Delta-G solvation = -3018.232131 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59113 -37.75960 -35.93694 -34.37403 -34.01080 -31.30227 -28.98955 -27.73165 -25.88799 -25.77198 -24.86944 -22.98257 -20.73648 -20.58430 -20.04502 -18.44669 -17.19058 -16.70682 -15.66751 -15.60834 -14.99348 -14.69165 -14.49193 -14.17955 -13.92804 -13.56462 -13.29875 -12.86831 -12.47338 -12.31442 -12.23222 -12.03517 -11.97896 -11.23099 -11.20038 -11.19476 -10.86969 -10.82053 -10.63350 -10.58594 -10.35414 -10.24581 -9.96712 -9.88159 -9.47273 -9.17323 -8.58579 -8.50571 -6.79440 -5.73414 -3.21536 2.24944 2.98791 3.38098 3.45057 3.47429 3.58199 4.25212 4.40657 4.50836 4.63674 4.64337 4.98528 5.04734 5.18662 5.32932 5.40681 5.42499 5.56262 5.65031 5.65916 5.70103 5.75324 5.83378 5.90801 5.96706 6.03643 6.04985 6.26408 6.30234 6.58975 6.71327 6.71780 6.75804 6.81250 7.04659 7.34328 7.73022 7.80639 7.93115 8.38409 8.63792 9.21732 9.84058 10.32737 11.31392 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.004236 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.213072 B = 6609.074475 C = 7110.672371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.155 4.155 3 C -0.062 4.062 4 C -0.102 4.102 5 C 0.524 3.476 6 O -0.540 6.540 7 N -0.724 5.724 8 C 0.096 3.904 9 C 0.145 3.855 10 N -0.596 5.596 11 C 0.161 3.839 12 C -0.260 4.260 13 H 0.070 0.930 14 C 0.004 3.996 15 N -0.904 5.904 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.290 1.290 20 C -0.112 4.112 21 C -0.141 4.141 22 C -0.128 4.128 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.393 0.607 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.043 0.957 35 H -0.001 1.001 36 H 0.253 0.747 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.130 -0.439 -18.774 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.099 4.099 4 C -0.105 4.105 5 C 0.309 3.691 6 O -0.417 6.417 7 N -0.375 5.375 8 C -0.030 4.030 9 C 0.016 3.984 10 N -0.319 5.319 11 C 0.017 3.983 12 C -0.390 4.390 13 H 0.088 0.912 14 C -0.194 4.194 15 N -0.549 5.549 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.216 1.216 19 H -0.216 1.216 20 C -0.150 4.150 21 C -0.178 4.178 22 C -0.166 4.166 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.226 0.774 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.996 -1.219 -18.081 19.808 hybrid contribution 0.184 0.489 0.850 0.998 sum 8.180 -0.730 -17.231 19.088 Atomic orbital electron populations 1.23842 0.95921 1.01920 1.00633 1.22818 0.95970 0.98242 1.00224 1.20465 0.97006 0.96273 0.96184 1.22118 0.94830 1.00026 0.93569 1.20265 0.78561 0.83231 0.87057 1.90689 1.60951 1.33380 1.56682 1.46162 1.50429 1.13994 1.26880 1.22468 0.94445 1.01656 0.84433 1.20988 0.94356 0.93330 0.89696 1.43923 1.06748 1.78832 1.02364 1.20838 0.83298 0.99452 0.94734 1.19246 1.12543 1.23804 0.83370 0.91247 1.25072 0.99439 0.96715 0.98218 1.70072 1.32173 1.26789 1.25834 0.86174 0.77961 0.78415 0.83924 1.20265 1.21554 1.21642 1.22824 0.94452 0.96318 1.01374 1.22838 0.99052 0.96479 0.99468 1.22988 0.95721 0.96345 1.01516 0.88515 0.88594 0.87290 0.90784 0.89973 0.77426 0.92443 0.91464 0.93417 0.94107 0.94980 0.93868 0.98264 0.93690 0.89253 0.90967 0.89983 0.91153 0.90629 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 14.32 29.01 0.42 -1.69 16 2 C -0.15 -1.73 8.71 -36.03 -0.31 -2.05 16 3 C -0.06 -0.60 5.03 -27.89 -0.14 -0.74 16 4 C -0.10 -1.17 0.78 -154.85 -0.12 -1.29 16 5 C 0.52 8.52 6.27 -10.99 -0.07 8.45 16 6 O -0.54 -11.41 16.31 5.56 0.09 -11.32 16 7 N -0.72 -11.31 5.54 -60.29 -0.33 -11.64 16 8 C 0.10 1.92 6.00 -4.04 -0.02 1.90 16 9 C 0.14 2.91 5.82 -4.04 -0.02 2.88 16 10 N -0.60 -15.08 2.92 -181.12 -0.53 -15.61 16 11 C 0.16 4.01 9.02 59.85 0.54 4.55 16 12 C -0.26 -7.20 9.65 -15.06 -0.15 -7.35 16 13 H 0.07 1.88 7.85 -52.49 -0.41 1.46 16 14 C 0.00 0.12 5.11 -17.43 -0.09 0.04 16 15 N -0.90 -26.79 10.71 55.49 0.59 -26.19 16 16 Si 0.91 22.08 29.57 -169.99 -5.03 17.06 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 C -0.11 -1.22 6.72 -25.91 -0.17 -1.40 16 21 C -0.14 -1.16 7.73 -25.92 -0.20 -1.36 16 22 C -0.13 -1.17 7.18 -25.92 -0.19 -1.36 16 23 H 0.10 1.03 8.06 -52.49 -0.42 0.60 16 24 H 0.10 1.03 7.84 -52.49 -0.41 0.62 16 25 H 0.11 1.20 7.31 -52.49 -0.38 0.82 16 26 H 0.07 0.69 7.79 -51.92 -0.40 0.28 16 27 H 0.08 0.63 7.31 -51.93 -0.38 0.25 16 28 H 0.39 4.82 8.45 -40.82 -0.35 4.47 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 31 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 32 H 0.04 0.72 7.86 -51.93 -0.41 0.32 16 33 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 34 H 0.04 1.14 7.36 -51.93 -0.38 0.76 16 35 H 0.00 -0.03 7.84 -51.93 -0.41 -0.43 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.09 1.15 7.83 -51.93 -0.41 0.74 16 38 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 39 H 0.08 0.55 7.61 -51.92 -0.40 0.16 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 42 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -32.71 343.25 -7.73 -40.44 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.17 Total: 1.50 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -0.53 Total: 0.59 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.27 Total: -53.44 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.71 -7.73 -40.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567302608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.803 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds