Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 120.00241 * 2 1 4 4 C 1.52991 * 109.47415 * 124.99619 * 3 2 1 5 5 C 1.50697 * 112.85334 * 295.14138 * 4 3 2 6 6 O 1.21281 * 120.00060 * 108.58381 * 5 4 3 7 7 N 1.34780 * 120.00021 * 288.85767 * 5 4 3 8 8 C 1.46499 * 120.00190 * 174.53178 * 7 5 4 9 9 C 1.52995 * 109.47334 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.47334 * 180.02562 * 9 8 7 11 11 C 1.46499 * 120.00247 * 270.00333 * 10 9 8 12 12 C 1.36940 * 119.99780 * 89.99894 * 10 9 8 13 13 H 1.08002 * 119.99705 * 23.37980 * 12 10 9 14 14 C 1.38806 * 120.00138 * 203.37054 * 12 10 9 15 15 N 1.31615 * 119.99811 * 12.68584 * 14 12 10 16 16 Si 1.86798 * 120.00332 * 192.67811 * 14 12 10 17 17 H 1.48505 * 109.47081 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47182 * 120.00182 * 16 14 12 19 19 H 1.48504 * 109.47137 * 240.00792 * 16 14 12 20 20 C 1.53785 * 113.69027 * 66.40569 * 4 3 2 21 21 C 1.53787 * 87.07822 * 89.13014 * 20 4 3 22 22 C 1.53773 * 87.08388 * 25.43441 * 21 20 4 23 23 H 1.07999 * 120.00222 * 180.02562 * 1 2 3 24 24 H 1.07997 * 119.99414 * 0.02562 * 1 2 3 25 25 H 1.07996 * 119.99899 * 179.97438 * 2 1 3 26 26 H 1.09008 * 109.46883 * 4.99824 * 3 2 1 27 27 H 1.08995 * 109.47090 * 245.00370 * 3 2 1 28 28 H 0.97001 * 119.99645 * 354.53673 * 7 5 4 29 29 H 1.09004 * 109.47306 * 300.00904 * 8 7 5 30 30 H 1.09006 * 109.46956 * 60.00405 * 8 7 5 31 31 H 1.09004 * 109.46996 * 300.00631 * 9 8 7 32 32 H 1.09006 * 109.46909 * 60.00203 * 9 8 7 33 33 H 1.08998 * 109.47014 * 95.20681 * 11 10 9 34 34 H 1.09003 * 109.47097 * 215.20723 * 11 10 9 35 35 H 1.09005 * 109.46831 * 335.20334 * 11 10 9 36 36 H 0.97001 * 120.00276 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.61923 * 203.67341 * 20 4 3 38 38 H 1.09000 * 113.61336 * 334.58371 * 20 4 3 39 39 H 1.09007 * 113.61070 * 270.88500 * 21 20 4 40 40 H 1.08996 * 113.61214 * 139.98602 * 21 20 4 41 41 H 1.08997 * 113.62003 * 220.02493 * 22 21 20 42 42 H 1.08998 * 113.61859 * 89.11274 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 2.3344 1.3207 2.5157 6 8 2.3731 0.3282 3.2118 7 7 1.6601 2.4105 2.9330 8 6 0.8801 2.3595 4.1720 9 6 0.2181 3.7174 4.4142 10 7 -0.5614 3.6665 5.6536 11 6 -1.9689 3.2619 5.6176 12 6 0.0257 3.9972 6.8457 13 1 0.8967 4.6356 6.8600 14 6 -0.4987 3.5120 8.0358 15 7 -1.3926 2.5462 8.0157 16 14 0.0644 4.2296 9.6660 17 1 1.0677 5.2958 9.4173 18 1 -1.1018 4.8053 10.3826 19 1 0.6748 3.1584 10.4939 20 6 4.1705 0.3017 1.0726 21 6 4.9705 1.3787 0.3209 22 6 4.1169 2.4197 1.0641 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5399 0.9353 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1316 0.0895 27 1 2.6213 1.4025 -0.9314 28 1 1.6912 3.2287 2.4128 29 1 0.1117 1.5911 4.0862 30 1 1.5395 2.1222 5.0069 31 1 0.9863 4.4860 4.4998 32 1 -0.4414 3.9542 3.5792 33 1 -2.0464 2.1967 5.8354 34 1 -2.5286 3.8268 6.3631 35 1 -2.3790 3.4612 4.6275 36 1 -1.7588 2.2068 8.8473 37 1 4.6046 0.0268 2.0339 38 1 3.9178 -0.5627 0.4585 39 1 4.8083 1.3702 -0.7570 40 1 6.0261 1.4065 0.5909 41 1 3.8207 3.2652 0.4432 42 1 4.5362 2.7239 2.0231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567302608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = -3.717206 kcal Electronic energy + Delta-G solvation = -20605.900377 eV Core-core repulsion = 17586.754169 eV Total energy + Delta-G solvation = -3019.146208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65653 -38.98314 -37.76180 -35.69676 -35.16345 -33.28704 -30.35160 -28.95445 -27.93685 -26.60991 -26.02269 -24.56429 -22.39951 -21.92804 -20.91389 -19.52136 -18.78794 -18.17153 -17.11918 -16.69725 -16.62556 -16.26042 -15.67495 -15.39394 -15.15689 -15.08038 -14.70563 -14.33355 -14.16438 -13.75576 -13.27707 -13.14953 -12.88473 -12.81582 -12.79494 -12.65472 -12.49974 -12.09951 -12.05288 -12.03292 -12.00481 -11.76804 -11.43395 -11.12363 -10.70503 -10.60141 -10.18226 -10.03391 -8.86838 -7.86757 -5.37530 1.38080 1.44770 1.45672 1.56409 1.69565 2.23802 2.51560 3.28584 3.39703 3.55503 3.74219 3.85425 3.90837 4.05629 4.19744 4.22728 4.29020 4.38847 4.62235 4.64232 4.68666 4.82048 4.82496 4.90193 4.96618 5.00516 5.04883 5.13337 5.14649 5.19102 5.25663 5.28057 5.49129 5.53405 5.62472 5.69100 5.74173 5.86460 6.29568 6.66049 7.10757 7.35415 7.81500 8.24322 9.16843 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.004236 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.213072 B = 6609.074475 C = 7110.672371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.057 4.057 4 C -0.098 4.098 5 C 0.518 3.482 6 O -0.597 6.597 7 N -0.709 5.709 8 C 0.118 3.882 9 C 0.148 3.852 10 N -0.614 5.614 11 C 0.174 3.826 12 C -0.267 4.267 13 H 0.076 0.924 14 C -0.054 4.054 15 N -0.939 5.939 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.296 1.296 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.122 4.122 23 H 0.095 0.905 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.414 0.586 29 H 0.028 0.972 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.075 0.925 33 H -0.001 1.001 34 H 0.019 0.981 35 H 0.038 0.962 36 H 0.248 0.752 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 1.637 -21.306 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.181 4.181 3 C -0.094 4.094 4 C -0.101 4.101 5 C 0.306 3.694 6 O -0.477 6.477 7 N -0.361 5.361 8 C -0.010 4.010 9 C 0.021 3.979 10 N -0.337 5.337 11 C 0.029 3.971 12 C -0.397 4.397 13 H 0.093 0.907 14 C -0.249 4.249 15 N -0.586 5.586 16 Si 0.798 3.202 17 H -0.186 1.186 18 H -0.214 1.214 19 H -0.223 1.223 20 C -0.162 4.162 21 C -0.160 4.160 22 C -0.160 4.160 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.102 0.898 27 H 0.134 0.866 28 H 0.251 0.749 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.017 0.983 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.322 0.910 -20.674 22.697 hybrid contribution -0.195 -0.206 1.575 1.600 sum 9.127 0.703 -19.099 21.180 Atomic orbital electron populations 1.23978 0.96280 1.02285 1.01164 1.23032 0.96145 0.99174 0.99787 1.20546 0.96891 0.95529 0.96482 1.22232 0.95091 1.01897 0.90927 1.21291 0.77650 0.82042 0.88415 1.90666 1.62867 1.35463 1.58752 1.45899 1.49586 1.15165 1.25443 1.21862 0.93175 1.00862 0.85063 1.21132 0.94938 0.93120 0.88707 1.44183 1.07393 1.78728 1.03411 1.20597 0.83513 0.96973 0.96021 1.19619 1.12259 1.23265 0.84559 0.90675 1.25874 1.00045 0.97356 1.01604 1.70250 1.33769 1.28369 1.26167 0.85169 0.77681 0.77708 0.79692 1.18610 1.21440 1.22348 1.22876 0.95108 0.97508 1.00716 1.22823 0.98947 0.93795 1.00468 1.23015 0.94354 0.96907 1.01696 0.88651 0.87975 0.87704 0.89792 0.86639 0.74881 0.95320 0.95798 0.91761 0.90638 0.98258 0.96235 0.94353 0.94280 0.92157 0.90456 0.87296 0.90421 0.87541 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.34 14.32 67.77 0.97 -3.37 16 2 C -0.16 -3.42 8.71 25.64 0.22 -3.19 16 3 C -0.06 -0.92 5.03 29.84 0.15 -0.77 16 4 C -0.10 -2.04 0.78 -52.40 -0.04 -2.08 16 5 C 0.52 16.71 6.27 87.66 0.55 17.26 16 6 O -0.60 -26.23 16.31 -3.03 -0.05 -26.28 16 7 N -0.71 -21.37 5.54 -463.06 -2.56 -23.93 16 8 C 0.12 4.78 6.00 86.38 0.52 5.30 16 9 C 0.15 5.70 5.82 86.38 0.50 6.20 16 10 N -0.61 -30.92 2.92 -726.93 -2.12 -33.05 16 11 C 0.17 8.70 9.02 127.77 1.15 9.86 16 12 C -0.27 -14.79 9.65 84.03 0.81 -13.98 16 13 H 0.08 4.00 7.85 -2.91 -0.02 3.97 16 14 C -0.05 -3.07 5.11 84.86 0.43 -2.64 16 15 N -0.94 -57.31 10.71 21.65 0.23 -57.07 16 16 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 C -0.12 -2.55 6.72 31.12 0.21 -2.34 16 21 C -0.12 -1.57 7.73 31.12 0.24 -1.33 16 22 C -0.12 -1.80 7.18 31.12 0.22 -1.58 16 23 H 0.10 2.02 8.06 -2.91 -0.02 1.99 16 24 H 0.10 2.04 7.84 -2.91 -0.02 2.02 16 25 H 0.10 2.24 7.31 -2.91 -0.02 2.22 16 26 H 0.08 1.22 7.79 -2.38 -0.02 1.20 16 27 H 0.12 1.17 7.31 -2.39 -0.02 1.15 16 28 H 0.41 8.93 8.45 -92.71 -0.78 8.15 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.06 2.29 8.03 -2.38 -0.02 2.27 16 32 H 0.08 2.42 7.86 -2.38 -0.02 2.40 16 33 H 0.00 -0.05 7.33 -2.39 -0.02 -0.07 16 34 H 0.02 1.03 7.36 -2.39 -0.02 1.01 16 35 H 0.04 1.58 7.84 -2.38 -0.02 1.56 16 36 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.06 1.59 7.83 -2.39 -0.02 1.57 16 38 H 0.08 1.47 7.13 -2.39 -0.02 1.46 16 39 H 0.11 0.88 7.61 -2.38 -0.02 0.86 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.97 8.10 -2.39 -0.02 0.95 16 42 H 0.07 1.31 8.09 -2.39 -0.02 1.30 16 Total: -1.00 -74.64 343.25 3.67 -70.97 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.20 Total: 14.11 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 5.94 Total: 7.34 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -4.46 Total: -114.05 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.64 3.67 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567302608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.257 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds