Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47092 * 2 1 4 4 C 1.36937 * 119.99937 * 273.83264 * 3 2 1 5 5 H 1.07998 * 119.99904 * 38.60850 * 4 3 2 6 6 C 1.38813 * 120.00068 * 218.61000 * 4 3 2 7 7 N 1.31615 * 119.99762 * 20.32639 * 6 4 3 8 8 Si 1.86802 * 119.99846 * 200.32469 * 6 4 3 9 9 H 1.48490 * 109.47434 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46946 * 120.00422 * 8 6 4 11 11 H 1.48500 * 109.47130 * 239.99761 * 8 6 4 12 12 C 1.46493 * 120.00288 * 93.83174 * 3 2 1 13 13 C 1.53001 * 109.47348 * 270.00220 * 12 3 2 14 14 N 1.46499 * 109.47626 * 179.97438 * 13 12 3 15 15 C 1.34770 * 120.00284 * 179.97438 * 14 13 12 16 16 O 1.21606 * 120.00037 * 0.02562 * 15 14 13 17 17 C 1.47104 * 119.99761 * 180.27256 * 15 14 13 18 18 C 1.33003 * 119.99553 * 173.68311 * 17 15 14 19 19 C 1.50696 * 119.99956 * 353.01136 * 18 17 15 20 20 C 1.50703 * 119.99627 * 173.01280 * 18 17 15 21 21 C 1.52996 * 117.49728 * 188.74611 * 20 18 17 22 22 C 1.52998 * 117.49871 * 120.08536 * 20 18 17 23 23 H 1.09000 * 109.46777 * 299.99888 * 1 2 3 24 24 H 1.08994 * 109.46952 * 60.00372 * 1 2 3 25 25 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46563 * 239.99633 * 2 1 3 27 27 H 1.08998 * 109.46721 * 120.00075 * 2 1 3 28 28 H 0.97005 * 119.99640 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47803 * 149.99875 * 12 3 2 30 30 H 1.09000 * 109.47297 * 29.99838 * 12 3 2 31 31 H 1.09004 * 109.47360 * 59.99394 * 13 12 3 32 32 H 1.09005 * 109.47123 * 299.99527 * 13 12 3 33 33 H 0.97003 * 119.99421 * 359.97438 * 14 13 12 34 34 H 1.07995 * 120.00065 * 353.68789 * 17 15 14 35 35 H 1.08994 * 109.47116 * 84.12485 * 19 18 17 36 36 H 1.09008 * 109.46467 * 204.12141 * 19 18 17 37 37 H 1.09000 * 109.47495 * 324.12041 * 19 18 17 38 38 H 1.08997 * 115.55079 * 334.41682 * 20 18 17 39 39 H 1.08998 * 117.49842 * 359.97438 * 21 20 18 40 40 H 1.09006 * 117.49870 * 145.01821 * 21 20 18 41 41 H 1.08991 * 117.50100 * 214.97365 * 22 20 18 42 42 H 1.09007 * 117.49855 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1719 2.0531 -1.1833 5 1 1.4494 1.9236 -1.9755 6 6 3.2561 2.9008 -1.3645 7 7 4.3257 2.7719 -0.6085 8 14 3.1970 4.2242 -2.6815 9 1 1.8934 4.1601 -3.3897 10 1 3.3524 5.5589 -2.0493 11 1 4.2988 4.0054 -3.6529 12 6 2.3425 2.0436 1.2658 13 6 1.0984 2.7539 1.8029 14 7 1.4223 3.4158 3.0691 15 6 0.4735 4.1090 3.7292 16 8 -0.6516 4.1846 3.2740 17 6 0.8004 4.7786 4.9975 18 6 -0.0971 5.5651 5.5848 19 6 -1.3858 5.8966 4.8776 20 6 0.1749 6.1247 6.9574 21 6 -0.9717 6.8499 7.6645 22 6 0.2095 7.6471 7.1055 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.0833 3.3645 -0.7349 29 1 3.1351 2.7735 1.1015 30 1 2.6774 1.3004 1.9895 31 1 0.3057 2.0240 1.9673 32 1 0.7635 3.4972 1.0793 33 1 2.3197 3.3551 3.4323 34 1 1.7691 4.6316 5.4517 35 1 -2.1087 5.0986 5.0467 36 1 -1.7825 6.8346 5.2663 37 1 -1.1984 5.9967 3.8085 38 1 0.8596 5.5433 7.5749 39 1 -1.9227 6.9226 7.1368 40 1 -1.0412 6.7459 8.7474 41 1 0.9164 8.0672 7.8208 42 1 0.0359 8.2440 6.2101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567327231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = 16.411269 kcal Electronic energy + Delta-G solvation = -20107.486221 eV Core-core repulsion = 17089.212850 eV Total energy + Delta-G solvation = -3018.273372 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.53974 -37.98610 -36.28898 -34.09497 -33.05229 -31.87449 -29.76508 -28.16043 -26.97581 -24.53863 -23.71091 -22.61458 -21.70074 -20.40803 -20.05613 -18.47290 -16.92877 -16.41190 -16.19328 -15.18486 -14.94593 -14.67941 -14.58211 -13.90467 -13.65177 -13.29399 -13.11070 -12.89921 -12.44884 -12.35378 -12.06868 -11.94483 -11.65377 -11.50028 -11.37001 -11.11214 -11.06655 -10.77981 -10.66696 -10.60539 -10.47282 -10.06571 -9.82339 -9.77991 -9.21386 -8.95913 -8.52919 -8.30775 -6.59912 -5.82306 -3.42908 1.43305 3.34362 3.43447 3.47215 3.50703 3.67587 3.79939 4.43290 4.50558 4.62015 4.70275 4.87327 5.08490 5.29560 5.35008 5.36504 5.55523 5.57684 5.65399 5.80895 5.83484 5.92204 6.01213 6.08110 6.20333 6.21525 6.40034 6.42934 6.52398 6.54659 6.61799 6.71863 6.92892 6.97922 7.07857 7.18464 7.57175 7.81357 8.05931 8.50068 8.70966 9.16125 9.77431 10.36208 11.17465 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.004065 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.014877 B = 6886.743470 C = 7553.599224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.260 4.260 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.138 3.862 13 C 0.098 3.902 14 N -0.717 5.717 15 C 0.537 3.463 16 O -0.549 6.549 17 C -0.219 4.219 18 C -0.012 4.012 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.173 4.173 22 C -0.168 4.168 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.097 0.903 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.124 0.876 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 5.377 15.191 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.011 3.989 13 C -0.027 4.027 14 N -0.367 5.367 15 C 0.326 3.674 16 O -0.430 6.430 17 C -0.240 4.240 18 C -0.014 4.014 19 C -0.178 4.178 20 C -0.148 4.148 21 C -0.210 4.210 22 C -0.205 4.205 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.115 0.885 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.230 0.770 34 H 0.142 0.858 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.468 5.459 14.793 17.043 hybrid contribution 0.585 0.668 -0.398 0.973 sum -5.883 6.127 14.395 16.714 Atomic orbital electron populations 1.22401 0.99962 0.99058 1.01387 1.20879 0.91714 0.87025 0.98874 1.43609 1.76322 1.08289 1.01892 1.19059 1.04299 1.22272 0.93358 0.92120 1.25218 0.94217 1.01193 0.98021 1.69995 1.03649 1.37869 1.41499 0.86330 0.77736 0.81956 0.81413 1.19958 1.21390 1.21565 1.21040 0.94604 0.96782 0.86482 1.22425 1.01129 0.96325 0.82860 1.46045 1.13313 1.52742 1.24566 1.18488 0.85038 0.79382 0.84519 1.90726 1.21363 1.61713 1.69213 1.22405 1.00536 1.03356 0.97733 1.21711 0.95279 0.92189 0.92247 1.21134 0.94331 1.00464 1.01888 1.21268 1.03276 0.95185 0.95070 1.23070 0.93983 1.03739 1.00231 1.22991 1.01495 0.92617 1.03403 0.93660 0.93135 0.94474 0.93515 0.94830 0.93587 0.88505 0.95378 0.93069 0.91887 0.76987 0.85813 0.90389 0.93012 0.88997 0.86730 0.88016 0.88411 0.88327 0.88393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.22 37.16 0.38 -2.80 16 2 C 0.14 3.01 6.43 -4.04 -0.03 2.98 16 3 N -0.58 -14.31 2.42 -173.24 -0.42 -14.73 16 4 C -0.26 -7.06 9.46 -15.06 -0.14 -7.21 16 5 H 0.06 1.66 7.91 -52.49 -0.42 1.25 16 6 C 0.01 0.38 4.97 -17.43 -0.09 0.29 16 7 N -0.89 -24.95 11.48 55.49 0.64 -24.31 16 8 Si 0.90 21.54 29.60 -169.99 -5.03 16.51 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.14 3.13 5.45 -4.05 -0.02 3.11 16 13 C 0.10 2.04 6.00 -4.04 -0.02 2.02 16 14 N -0.72 -12.51 5.55 -61.49 -0.34 -12.85 16 15 C 0.54 9.35 7.62 -12.67 -0.10 9.25 16 16 O -0.55 -11.20 13.28 5.27 0.07 -11.13 16 17 C -0.22 -2.96 9.67 -37.80 -0.37 -3.33 16 18 C -0.01 -0.15 5.81 -101.16 -0.59 -0.74 16 19 C -0.12 -1.59 7.91 36.00 0.28 -1.30 16 20 C -0.13 -1.22 6.00 -91.77 -0.55 -1.77 16 21 C -0.17 -1.37 9.77 -26.70 -0.26 -1.63 16 22 C -0.17 -1.36 10.11 -26.69 -0.27 -1.63 16 23 H 0.04 0.86 6.53 -51.93 -0.34 0.52 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.01 8.07 -51.93 -0.42 0.59 16 27 H 0.03 0.67 7.85 -51.93 -0.41 0.26 16 28 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.10 2.45 5.55 -51.93 -0.29 2.17 16 30 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 31 H 0.05 1.09 6.53 -51.93 -0.34 0.75 16 32 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.40 5.91 8.46 -40.82 -0.35 5.56 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.08 1.06 8.03 -51.93 -0.42 0.64 16 36 H 0.05 0.54 6.29 -51.92 -0.33 0.22 16 37 H 0.09 1.44 6.15 -51.93 -0.32 1.13 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 0.81 6.41 -51.93 -0.33 0.48 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -30.34 342.06 -8.57 -38.91 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.87 Total: 5.20 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.77 Total: -2.76 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.12 Total: -51.89 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.34 -8.57 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567327231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.325 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds