Wall clock time and date at job start Mon Mar 30 2020 00:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47092 * 2 1 4 4 C 1.36937 * 119.99937 * 273.83264 * 3 2 1 5 5 H 1.07998 * 119.99904 * 38.60850 * 4 3 2 6 6 C 1.38813 * 120.00068 * 218.61000 * 4 3 2 7 7 N 1.31615 * 119.99762 * 20.32639 * 6 4 3 8 8 Si 1.86802 * 119.99846 * 200.32469 * 6 4 3 9 9 H 1.48490 * 109.47434 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46946 * 120.00422 * 8 6 4 11 11 H 1.48500 * 109.47130 * 239.99761 * 8 6 4 12 12 C 1.46493 * 120.00288 * 93.83174 * 3 2 1 13 13 C 1.53001 * 109.47348 * 270.00220 * 12 3 2 14 14 N 1.46499 * 109.47626 * 179.97438 * 13 12 3 15 15 C 1.34770 * 120.00284 * 179.97438 * 14 13 12 16 16 O 1.21606 * 120.00037 * 0.02562 * 15 14 13 17 17 C 1.47104 * 119.99761 * 180.27256 * 15 14 13 18 18 C 1.33003 * 119.99553 * 173.68311 * 17 15 14 19 19 C 1.50696 * 119.99956 * 353.01136 * 18 17 15 20 20 C 1.50703 * 119.99627 * 173.01280 * 18 17 15 21 21 C 1.52996 * 117.49728 * 188.74611 * 20 18 17 22 22 C 1.52998 * 117.49871 * 120.08536 * 20 18 17 23 23 H 1.09000 * 109.46777 * 299.99888 * 1 2 3 24 24 H 1.08994 * 109.46952 * 60.00372 * 1 2 3 25 25 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46563 * 239.99633 * 2 1 3 27 27 H 1.08998 * 109.46721 * 120.00075 * 2 1 3 28 28 H 0.97005 * 119.99640 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47803 * 149.99875 * 12 3 2 30 30 H 1.09000 * 109.47297 * 29.99838 * 12 3 2 31 31 H 1.09004 * 109.47360 * 59.99394 * 13 12 3 32 32 H 1.09005 * 109.47123 * 299.99527 * 13 12 3 33 33 H 0.97003 * 119.99421 * 359.97438 * 14 13 12 34 34 H 1.07995 * 120.00065 * 353.68789 * 17 15 14 35 35 H 1.08994 * 109.47116 * 84.12485 * 19 18 17 36 36 H 1.09008 * 109.46467 * 204.12141 * 19 18 17 37 37 H 1.09000 * 109.47495 * 324.12041 * 19 18 17 38 38 H 1.08997 * 115.55079 * 334.41682 * 20 18 17 39 39 H 1.08998 * 117.49842 * 359.97438 * 21 20 18 40 40 H 1.09006 * 117.49870 * 145.01821 * 21 20 18 41 41 H 1.08991 * 117.50100 * 214.97365 * 22 20 18 42 42 H 1.09007 * 117.49855 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1719 2.0531 -1.1833 5 1 1.4494 1.9236 -1.9755 6 6 3.2561 2.9008 -1.3645 7 7 4.3257 2.7719 -0.6085 8 14 3.1970 4.2242 -2.6815 9 1 1.8934 4.1601 -3.3897 10 1 3.3524 5.5589 -2.0493 11 1 4.2988 4.0054 -3.6529 12 6 2.3425 2.0436 1.2658 13 6 1.0984 2.7539 1.8029 14 7 1.4223 3.4158 3.0691 15 6 0.4735 4.1090 3.7292 16 8 -0.6516 4.1846 3.2740 17 6 0.8004 4.7786 4.9975 18 6 -0.0971 5.5651 5.5848 19 6 -1.3858 5.8966 4.8776 20 6 0.1749 6.1247 6.9574 21 6 -0.9717 6.8499 7.6645 22 6 0.2095 7.6471 7.1055 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.0833 3.3645 -0.7349 29 1 3.1351 2.7735 1.1015 30 1 2.6774 1.3004 1.9895 31 1 0.3057 2.0240 1.9673 32 1 0.7635 3.4972 1.0793 33 1 2.3197 3.3551 3.4323 34 1 1.7691 4.6316 5.4517 35 1 -2.1087 5.0986 5.0467 36 1 -1.7825 6.8346 5.2663 37 1 -1.1984 5.9967 3.8085 38 1 0.8596 5.5433 7.5749 39 1 -1.9227 6.9226 7.1368 40 1 -1.0412 6.7459 8.7474 41 1 0.9164 8.0672 7.8208 42 1 0.0359 8.2440 6.2101 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567327231.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:42 Heat of formation + Delta-G solvation = -1.083898 kcal Electronic energy + Delta-G solvation = -20108.244869 eV Core-core repulsion = 17089.212850 eV Total energy + Delta-G solvation = -3019.032019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.86385 -38.88775 -38.06002 -35.64644 -34.08718 -33.84544 -31.43139 -29.72554 -28.35009 -26.25625 -24.96674 -23.28890 -23.17085 -22.15677 -21.47053 -19.52516 -18.65978 -17.79799 -17.27867 -16.93907 -16.42981 -16.20623 -15.70649 -15.49107 -15.38849 -14.59089 -14.50883 -14.14330 -13.97805 -13.83428 -13.63774 -13.22884 -13.03149 -12.87912 -12.66252 -12.46238 -12.36756 -12.29931 -12.21849 -12.03287 -11.83540 -11.66878 -11.50315 -11.32385 -10.61444 -10.55081 -10.13111 -9.68857 -8.59965 -7.86795 -5.51902 0.35479 1.41695 1.46084 1.55596 2.27272 2.32271 2.50885 3.02482 3.21100 3.56573 3.80519 3.88317 3.96674 4.13505 4.15727 4.29613 4.32576 4.45392 4.46490 4.66866 4.74255 4.75315 4.81111 4.82801 4.83447 5.00376 5.07409 5.10168 5.15576 5.22158 5.26858 5.27396 5.46980 5.53803 5.54713 5.58088 5.65832 5.74650 6.44611 6.69981 7.13762 7.34263 7.81162 8.34119 9.08944 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.004065 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.014877 B = 6886.743470 C = 7553.599224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.599 5.599 4 C -0.272 4.272 5 H 0.051 0.949 6 C -0.028 4.028 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.147 3.853 13 C 0.121 3.879 14 N -0.713 5.713 15 C 0.531 3.469 16 O -0.587 6.587 17 C -0.236 4.236 18 C 0.003 3.997 19 C -0.122 4.122 20 C -0.144 4.144 21 C -0.166 4.166 22 C -0.162 4.162 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.410 0.590 34 H 0.153 0.847 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.989 5.967 17.183 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.320 5.320 4 C -0.402 4.402 5 H 0.069 0.931 6 C -0.226 4.226 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.211 1.211 12 C 0.020 3.980 13 C -0.005 4.005 14 N -0.364 5.364 15 C 0.322 3.678 16 O -0.470 6.470 17 C -0.257 4.257 18 C 0.001 3.999 19 C -0.178 4.178 20 C -0.162 4.162 21 C -0.203 4.203 22 C -0.198 4.198 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.246 0.754 34 H 0.171 0.829 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.149 0.851 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.590 6.038 16.804 19.033 hybrid contribution 0.548 0.488 -0.970 1.216 sum -6.042 6.526 15.835 18.161 Atomic orbital electron populations 1.22224 0.98012 1.00872 1.00318 1.21015 0.93139 0.85453 0.99277 1.43856 1.76682 1.09676 1.01783 1.19194 1.03995 1.22894 0.94120 0.93132 1.25808 0.94023 1.02760 1.00021 1.70083 1.04021 1.38519 1.42821 0.85465 0.77668 0.79498 0.79363 1.19747 1.21567 1.21147 1.20895 0.94354 0.96537 0.86261 1.21879 0.99963 0.95095 0.83588 1.45899 1.14280 1.52747 1.23463 1.19180 0.84293 0.78834 0.85468 1.90713 1.22876 1.62968 1.70440 1.22358 1.02476 1.04589 0.96271 1.22006 0.94022 0.90600 0.93292 1.21068 0.94952 1.01526 1.00238 1.21327 1.05105 0.96333 0.93473 1.23186 0.93449 1.02374 1.01248 1.23087 1.01935 0.91247 1.03575 0.94144 0.94709 0.91161 0.94308 0.93146 0.93679 0.91004 0.93808 0.93516 0.95470 0.75378 0.82941 0.91196 0.90460 0.92106 0.85141 0.88288 0.86458 0.86429 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 10.22 71.98 0.74 -4.98 16 2 C 0.14 5.74 6.43 86.38 0.56 6.29 16 3 N -0.60 -29.80 2.42 -702.01 -1.70 -31.50 16 4 C -0.27 -15.00 9.46 84.03 0.79 -14.20 16 5 H 0.05 2.84 7.91 -2.91 -0.02 2.82 16 6 C -0.03 -1.55 4.97 84.86 0.42 -1.13 16 7 N -0.91 -51.75 11.48 21.65 0.25 -51.50 16 8 Si 0.95 44.84 29.60 68.60 2.03 46.87 16 9 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 C 0.15 6.70 5.45 86.38 0.47 7.17 16 13 C 0.12 5.17 6.00 86.38 0.52 5.68 16 14 N -0.71 -25.01 5.55 -466.72 -2.59 -27.60 16 15 C 0.53 18.63 7.62 86.57 0.66 19.28 16 16 O -0.59 -24.66 13.28 -4.05 -0.05 -24.71 16 17 C -0.24 -6.11 9.67 23.43 0.23 -5.88 16 18 C 0.00 0.06 5.81 -17.61 -0.10 -0.04 16 19 C -0.12 -3.12 7.91 71.23 0.56 -2.55 16 20 C -0.14 -2.29 6.00 -11.54 -0.07 -2.36 16 21 C -0.17 -2.08 9.77 30.62 0.30 -1.78 16 22 C -0.16 -2.10 10.11 30.62 0.31 -1.79 16 23 H 0.04 1.51 6.53 -2.39 -0.02 1.50 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.04 1.67 8.07 -2.39 -0.02 1.65 16 27 H 0.05 1.93 7.85 -2.39 -0.02 1.91 16 28 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 29 H 0.07 3.71 5.55 -2.39 -0.01 3.69 16 30 H 0.04 1.83 7.87 -2.39 -0.02 1.81 16 31 H 0.05 2.02 6.53 -2.39 -0.02 2.01 16 32 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.41 12.03 8.46 -92.71 -0.78 11.24 16 34 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.07 1.90 8.03 -2.39 -0.02 1.88 16 36 H 0.08 1.52 6.29 -2.38 -0.01 1.51 16 37 H 0.06 1.97 6.15 -2.39 -0.01 1.96 16 38 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.30 6.41 -2.39 -0.02 1.29 16 40 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -66.32 342.06 3.53 -62.79 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.22 Total: 21.93 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.38 Total: 3.73 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -4.04 Total: -110.60 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.05 Total: -24.71 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -66.32 3.53 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567327231.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.704 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds