Wall clock time and date at job start Mon Mar 30 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47412 * 2 1 4 4 C 1.36930 * 120.00021 * 270.32632 * 3 2 1 5 5 H 1.07997 * 120.00395 * 326.14176 * 4 3 2 6 6 C 1.38812 * 120.00093 * 146.14088 * 4 3 2 7 7 N 1.31620 * 119.99883 * 336.90926 * 6 4 3 8 8 Si 1.86799 * 120.00040 * 156.90293 * 6 4 3 9 9 H 1.48499 * 109.46985 * 60.00342 * 8 6 4 10 10 H 1.48507 * 109.47024 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47375 * 300.00076 * 8 6 4 12 12 C 1.46499 * 119.99610 * 90.32459 * 3 2 1 13 13 C 1.53000 * 109.47255 * 90.00128 * 12 3 2 14 14 N 1.46500 * 109.47114 * 179.97438 * 13 12 3 15 15 C 1.34780 * 119.99975 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00124 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.55418 * 325.73141 * 17 15 14 19 19 C 1.53114 * 117.51559 * 111.53965 * 17 15 14 20 20 C 1.52456 * 59.85873 * 107.44579 * 19 17 15 21 21 C 1.53253 * 128.58471 * 117.60081 * 20 19 17 22 22 C 1.53885 * 86.88707 * 114.94366 * 21 20 19 23 23 C 1.53259 * 128.58654 * 242.39885 * 20 19 17 24 24 H 1.09002 * 109.46761 * 299.99703 * 1 2 3 25 25 H 1.08999 * 109.47491 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47409 * 59.99839 * 1 2 3 27 27 H 1.08998 * 109.47007 * 120.00515 * 2 1 3 28 28 H 1.09002 * 109.46761 * 240.00297 * 2 1 3 29 29 H 0.97003 * 120.00198 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47306 * 210.00134 * 12 3 2 31 31 H 1.09005 * 109.47440 * 329.99912 * 12 3 2 32 32 H 1.08994 * 109.47335 * 299.99754 * 13 12 3 33 33 H 1.08998 * 109.47099 * 59.99950 * 13 12 3 34 34 H 0.96999 * 120.00375 * 0.02562 * 14 13 12 35 35 H 1.09000 * 117.51562 * 214.89716 * 19 17 15 36 36 H 1.08999 * 117.51597 * 359.97438 * 19 17 15 37 37 H 1.09008 * 113.64894 * 229.44381 * 21 20 19 38 38 H 1.09004 * 113.64969 * 0.44184 * 21 20 19 39 39 H 1.09000 * 113.58934 * 270.39414 * 22 21 20 40 40 H 1.08999 * 113.58972 * 139.56829 * 22 21 20 41 41 H 1.09002 * 113.64321 * 359.55181 * 23 20 19 42 42 H 1.08997 * 113.64593 * 130.55834 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0289 -1.1858 5 1 2.5927 1.4773 -2.0448 6 6 2.0122 3.3946 -1.2840 7 7 1.1858 3.9856 -0.4472 8 14 2.8782 4.3938 -2.6035 9 1 2.5076 3.8710 -3.9432 10 1 2.4677 5.8169 -2.4960 11 1 4.3480 4.2878 -2.4199 12 6 2.2693 2.0693 1.2687 13 6 3.7166 1.8280 1.7023 14 7 3.9677 2.5166 2.9707 15 6 5.1835 2.4437 3.5480 16 8 6.0697 1.8084 3.0170 17 6 5.4416 3.1516 4.8530 18 1 4.9147 4.0962 4.9879 19 6 5.6711 2.2852 6.0944 20 6 6.8370 3.0313 5.4555 21 6 7.7146 4.1318 6.0615 22 6 8.8860 3.1395 5.9559 23 6 8.1066 2.4554 4.8189 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.0267 4.9401 -0.5155 30 1 2.1017 3.1388 1.1414 31 1 1.5925 1.6837 2.0313 32 1 3.8843 0.7586 1.8297 33 1 4.3934 2.2136 0.9398 34 1 3.2588 3.0244 3.3956 35 1 5.2947 2.6595 7.0464 36 1 5.6348 1.2032 5.9671 37 1 7.8236 5.0068 5.4205 38 1 7.4492 4.3875 7.0874 39 1 9.0080 2.5131 6.8396 40 1 9.8190 3.5992 5.6300 41 1 8.1554 1.3669 4.8487 42 1 8.3247 2.8636 3.8321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567345187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:51 Heat of formation + Delta-G solvation = 23.767660 kcal Electronic energy + Delta-G solvation = -20327.800612 eV Core-core repulsion = 17309.846237 eV Total energy + Delta-G solvation = -3017.954375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16432 -38.22914 -36.23484 -33.98904 -33.63761 -31.83061 -29.70408 -27.56375 -25.71206 -24.57633 -23.47455 -23.11359 -21.87929 -20.12797 -19.73371 -18.36231 -17.07738 -16.36418 -15.76318 -15.27639 -15.04265 -14.89561 -14.52263 -14.01284 -13.82146 -13.53606 -12.76096 -12.65720 -12.43941 -12.24779 -12.11506 -11.98377 -11.60194 -11.49414 -11.18207 -11.08812 -10.86219 -10.64454 -10.38649 -10.36158 -10.12021 -10.04130 -9.91603 -9.78816 -9.77530 -9.32234 -8.56065 -8.42437 -6.68047 -5.83121 -3.36716 2.82849 3.36366 3.42339 3.46615 3.53318 3.79529 4.39629 4.48999 4.57681 4.74545 4.76803 4.85667 5.26461 5.29283 5.29946 5.52000 5.55542 5.58985 5.65268 5.75759 5.79720 5.90894 6.08637 6.12314 6.16095 6.20742 6.26874 6.37432 6.41440 6.53532 6.56463 6.65289 6.93920 6.95936 7.07613 7.23789 7.60567 7.79280 8.01969 8.45664 8.68494 9.13812 9.77640 10.33208 11.17398 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021494 B = 0.004352 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.371363 B = 6432.953126 C = 7157.496705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.581 5.581 4 C -0.259 4.259 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.133 3.867 13 C 0.100 3.900 14 N -0.717 5.717 15 C 0.536 3.464 16 O -0.545 6.545 17 C -0.177 4.177 18 H 0.121 0.879 19 C -0.123 4.123 20 C -0.128 4.128 21 C -0.099 4.099 22 C -0.142 4.142 23 C -0.081 4.081 24 H 0.042 0.958 25 H 0.031 0.969 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.043 0.957 29 H 0.255 0.745 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -0.733 14.054 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.302 5.302 4 C -0.388 4.388 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.209 1.209 12 C 0.006 3.994 13 C -0.025 4.025 14 N -0.367 5.367 15 C 0.321 3.679 16 O -0.422 6.422 17 C -0.199 4.199 18 H 0.139 0.861 19 C -0.160 4.160 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.180 4.180 23 C -0.119 4.119 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.230 0.770 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.216 -1.047 13.616 15.937 hybrid contribution -0.196 0.925 -0.512 1.075 sum 8.020 -0.122 13.105 15.365 Atomic orbital electron populations 1.22265 0.99591 0.98411 1.01892 1.20900 0.92047 0.87239 0.98317 1.43706 1.74334 1.10116 1.02002 1.19071 1.38164 0.91258 0.90328 0.91867 1.25059 0.97257 0.98477 0.98198 1.69959 1.33350 1.10320 1.39440 0.86466 0.80097 0.79105 0.81769 1.20669 1.21608 1.20873 1.21096 0.89127 1.02608 0.86570 1.22306 1.01847 0.95350 0.82989 1.46058 1.12457 1.53197 1.24986 1.19584 0.82569 0.80700 0.85047 1.90661 1.44146 1.42762 1.64680 1.22208 1.02284 1.01922 0.93443 0.86135 1.22757 0.99627 0.98598 0.95063 1.22247 0.88259 1.00678 1.01696 1.22500 0.94771 0.96033 1.00300 1.22818 0.97046 0.98625 0.99499 1.22308 0.91633 1.00280 0.97647 0.93866 0.95027 0.92633 0.94833 0.93848 0.93519 0.87752 0.95470 0.93457 0.91810 0.76950 0.87856 0.88181 0.89656 0.91410 0.90301 0.91391 0.91366 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 37.16 0.38 -2.83 16 2 C 0.14 2.98 6.39 -4.04 -0.03 2.95 16 3 N -0.58 -14.24 2.45 -173.24 -0.42 -14.67 16 4 C -0.26 -6.99 9.48 -15.06 -0.14 -7.14 16 5 H 0.06 1.71 7.93 -52.49 -0.42 1.30 16 6 C 0.01 0.27 4.95 -17.43 -0.09 0.18 16 7 N -0.89 -24.74 11.31 55.49 0.63 -24.11 16 8 Si 0.90 21.54 29.61 -169.99 -5.03 16.51 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.13 3.00 5.41 -4.04 -0.02 2.98 16 13 C 0.10 2.09 6.00 -4.04 -0.02 2.07 16 14 N -0.72 -12.38 5.56 -60.30 -0.33 -12.72 16 15 C 0.54 9.23 7.61 -10.98 -0.08 9.14 16 16 O -0.54 -11.28 15.14 5.55 0.08 -11.19 16 17 C -0.18 -2.30 6.19 -91.99 -0.57 -2.87 16 18 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 19 C -0.12 -1.34 10.23 -26.95 -0.28 -1.62 16 20 C -0.13 -1.53 2.88 -154.80 -0.45 -1.98 16 21 C -0.10 -0.95 8.10 -26.14 -0.21 -1.17 16 22 C -0.14 -1.36 8.08 -25.81 -0.21 -1.57 16 23 C -0.08 -1.03 6.47 -26.13 -0.17 -1.20 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.04 0.90 8.04 -51.93 -0.42 0.48 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.11 2.63 5.31 -51.93 -0.28 2.36 16 31 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.40 5.85 8.47 -40.82 -0.35 5.51 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.25 8.05 -51.93 -0.42 0.83 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -30.25 345.53 -9.10 -39.36 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.34 Total: 4.64 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.88 Total: -3.03 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.13 Total: -51.49 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.25 -9.10 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567345187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.124 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds