Wall clock time and date at job start Mon Mar 30 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47412 * 2 1 4 4 C 1.36930 * 120.00021 * 270.32632 * 3 2 1 5 5 H 1.07997 * 120.00395 * 326.14176 * 4 3 2 6 6 C 1.38812 * 120.00093 * 146.14088 * 4 3 2 7 7 N 1.31620 * 119.99883 * 336.90926 * 6 4 3 8 8 Si 1.86799 * 120.00040 * 156.90293 * 6 4 3 9 9 H 1.48499 * 109.46985 * 60.00342 * 8 6 4 10 10 H 1.48507 * 109.47024 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47375 * 300.00076 * 8 6 4 12 12 C 1.46499 * 119.99610 * 90.32459 * 3 2 1 13 13 C 1.53000 * 109.47255 * 90.00128 * 12 3 2 14 14 N 1.46500 * 109.47114 * 179.97438 * 13 12 3 15 15 C 1.34780 * 119.99975 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99849 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00124 * 180.02562 * 15 14 13 18 18 H 1.09000 * 115.55418 * 325.73141 * 17 15 14 19 19 C 1.53114 * 117.51559 * 111.53965 * 17 15 14 20 20 C 1.52456 * 59.85873 * 107.44579 * 19 17 15 21 21 C 1.53253 * 128.58471 * 117.60081 * 20 19 17 22 22 C 1.53885 * 86.88707 * 114.94366 * 21 20 19 23 23 C 1.53259 * 128.58654 * 242.39885 * 20 19 17 24 24 H 1.09002 * 109.46761 * 299.99703 * 1 2 3 25 25 H 1.08999 * 109.47491 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47409 * 59.99839 * 1 2 3 27 27 H 1.08998 * 109.47007 * 120.00515 * 2 1 3 28 28 H 1.09002 * 109.46761 * 240.00297 * 2 1 3 29 29 H 0.97003 * 120.00198 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47306 * 210.00134 * 12 3 2 31 31 H 1.09005 * 109.47440 * 329.99912 * 12 3 2 32 32 H 1.08994 * 109.47335 * 299.99754 * 13 12 3 33 33 H 1.08998 * 109.47099 * 59.99950 * 13 12 3 34 34 H 0.96999 * 120.00375 * 0.02562 * 14 13 12 35 35 H 1.09000 * 117.51562 * 214.89716 * 19 17 15 36 36 H 1.08999 * 117.51597 * 359.97438 * 19 17 15 37 37 H 1.09008 * 113.64894 * 229.44381 * 21 20 19 38 38 H 1.09004 * 113.64969 * 0.44184 * 21 20 19 39 39 H 1.09000 * 113.58934 * 270.39414 * 22 21 20 40 40 H 1.08999 * 113.58972 * 139.56829 * 22 21 20 41 41 H 1.09002 * 113.64321 * 359.55181 * 23 20 19 42 42 H 1.08997 * 113.64593 * 130.55834 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2402 2.0289 -1.1858 5 1 2.5927 1.4773 -2.0448 6 6 2.0122 3.3946 -1.2840 7 7 1.1858 3.9856 -0.4472 8 14 2.8782 4.3938 -2.6035 9 1 2.5076 3.8710 -3.9432 10 1 2.4677 5.8169 -2.4960 11 1 4.3480 4.2878 -2.4199 12 6 2.2693 2.0693 1.2687 13 6 3.7166 1.8280 1.7023 14 7 3.9677 2.5166 2.9707 15 6 5.1835 2.4437 3.5480 16 8 6.0697 1.8084 3.0170 17 6 5.4416 3.1516 4.8530 18 1 4.9147 4.0962 4.9879 19 6 5.6711 2.2852 6.0944 20 6 6.8370 3.0313 5.4555 21 6 7.7146 4.1318 6.0615 22 6 8.8860 3.1395 5.9559 23 6 8.1066 2.4554 4.8189 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.0267 4.9401 -0.5155 30 1 2.1017 3.1388 1.1414 31 1 1.5925 1.6837 2.0313 32 1 3.8843 0.7586 1.8297 33 1 4.3934 2.2136 0.9398 34 1 3.2588 3.0244 3.3956 35 1 5.2947 2.6595 7.0464 36 1 5.6348 1.2032 5.9671 37 1 7.8236 5.0068 5.4205 38 1 7.4492 4.3875 7.0874 39 1 9.0080 2.5131 6.8396 40 1 9.8190 3.5992 5.6300 41 1 8.1554 1.3669 4.8487 42 1 8.3247 2.8636 3.8321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567345187.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:51 Heat of formation + Delta-G solvation = 6.336055 kcal Electronic energy + Delta-G solvation = -20328.556503 eV Core-core repulsion = 17309.846237 eV Total energy + Delta-G solvation = -3018.710266 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30304 -39.45352 -38.03683 -35.59105 -34.59283 -33.80204 -31.41168 -29.36183 -26.59204 -26.27331 -25.00251 -23.93519 -23.44353 -21.85603 -21.14783 -19.34297 -18.72484 -17.91252 -17.05884 -16.89904 -16.35794 -16.08039 -16.01414 -15.61330 -15.41811 -15.12147 -14.35989 -14.20569 -13.92984 -13.67700 -13.23487 -13.10308 -12.98223 -12.87628 -12.64526 -12.45911 -12.42014 -12.31913 -12.26273 -11.97725 -11.75579 -11.54232 -11.27224 -11.02026 -10.80953 -10.60988 -10.55902 -10.01936 -8.66891 -7.87731 -5.44443 1.42875 1.46774 1.52565 1.53966 2.18059 2.50129 2.79291 3.20652 3.42820 3.69749 3.73861 3.83990 3.90285 3.97737 4.15046 4.33340 4.43352 4.45181 4.52257 4.65113 4.75162 4.80060 4.80864 4.85639 4.87232 4.89828 5.03666 5.04902 5.09785 5.16775 5.22118 5.28056 5.40351 5.43942 5.52751 5.56405 5.64411 5.78461 6.41779 6.64772 7.11989 7.31286 7.81890 8.31816 9.09295 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021494 B = 0.004352 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.371363 B = 6432.953126 C = 7157.496705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.272 4.272 5 H 0.055 0.945 6 C -0.030 4.030 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.142 3.858 13 C 0.122 3.878 14 N -0.711 5.711 15 C 0.530 3.470 16 O -0.586 6.586 17 C -0.189 4.189 18 H 0.145 0.855 19 C -0.102 4.102 20 C -0.139 4.139 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.098 4.098 24 H 0.036 0.964 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.043 0.957 29 H 0.253 0.747 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.026 0.974 34 H 0.411 0.589 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.051 0.949 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -0.396 16.197 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.010 3.990 3 N -0.320 5.320 4 C -0.402 4.402 5 H 0.073 0.927 6 C -0.228 4.228 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.215 1.215 12 C 0.015 3.985 13 C -0.004 4.004 14 N -0.362 5.362 15 C 0.318 3.682 16 O -0.467 6.467 17 C -0.210 4.210 18 H 0.163 0.837 19 C -0.139 4.139 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.167 4.167 23 C -0.135 4.135 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.247 0.753 35 H 0.157 0.843 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.273 -0.710 15.779 17.831 hybrid contribution -0.196 0.721 -1.191 1.406 sum 8.077 0.011 14.588 16.675 Atomic orbital electron populations 1.22107 0.98352 1.00252 1.00185 1.21056 0.92983 0.85664 0.99316 1.43944 1.74922 1.11255 1.01845 1.19248 1.38013 0.91847 0.91125 0.92698 1.25615 0.97865 0.99158 1.00122 1.70053 1.34232 1.10250 1.40711 0.85630 0.78558 0.77923 0.80117 1.19974 1.21341 1.21549 1.20948 0.90109 1.01065 0.86390 1.21777 0.99878 0.95044 0.83723 1.45930 1.13376 1.53114 1.23812 1.20401 0.81573 0.80035 0.86195 1.90644 1.45271 1.44659 1.66124 1.22205 1.04007 1.03031 0.91771 0.83731 1.22885 0.97942 0.97828 0.95209 1.22519 0.87713 1.01933 1.01772 1.22488 0.93439 0.95161 1.01421 1.22793 0.97244 0.98237 0.98378 1.22318 0.94022 0.99406 0.97757 0.94470 0.91367 0.95303 0.92804 0.93839 0.93726 0.90136 0.93892 0.93955 0.95536 0.75261 0.84263 0.89234 0.89729 0.88907 0.88766 0.90505 0.93041 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 10.24 71.98 0.74 -5.01 16 2 C 0.13 5.60 6.39 86.38 0.55 6.15 16 3 N -0.60 -29.54 2.45 -702.01 -1.72 -31.26 16 4 C -0.27 -14.94 9.48 84.03 0.80 -14.14 16 5 H 0.06 3.04 7.93 -2.91 -0.02 3.02 16 6 C -0.03 -1.63 4.95 84.86 0.42 -1.21 16 7 N -0.91 -51.13 11.31 21.65 0.24 -50.89 16 8 Si 0.95 44.82 29.61 68.60 2.03 46.85 16 9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 C 0.14 6.43 5.41 86.38 0.47 6.90 16 13 C 0.12 5.20 6.00 86.38 0.52 5.71 16 14 N -0.71 -24.52 5.56 -463.06 -2.57 -27.10 16 15 C 0.53 18.28 7.61 87.66 0.67 18.95 16 16 O -0.59 -25.07 15.14 -3.04 -0.05 -25.12 16 17 C -0.19 -4.57 6.19 -11.68 -0.07 -4.65 16 18 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 19 C -0.10 -1.93 10.23 30.45 0.31 -1.61 16 20 C -0.14 -3.06 2.88 -52.37 -0.15 -3.21 16 21 C -0.09 -1.44 8.10 30.98 0.25 -1.18 16 22 C -0.13 -2.19 8.08 31.19 0.25 -1.94 16 23 C -0.10 -2.47 6.47 30.98 0.20 -2.27 16 24 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 29 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.08 4.12 5.31 -2.39 -0.01 4.11 16 31 H 0.04 1.78 8.07 -2.38 -0.02 1.76 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.41 11.78 8.47 -92.71 -0.79 10.99 16 35 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.84 8.05 -2.39 -0.02 1.82 16 Total: -1.00 -66.81 345.53 3.09 -63.72 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.20 Total: 21.30 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.95 Total: 2.49 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.05 Total: -109.25 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -66.81 3.09 -63.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567345187.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.058 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds