Wall clock time and date at job start Mon Mar 30 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47379 * 2 1 4 4 C 1.36932 * 120.00123 * 95.55187 * 3 2 1 5 5 H 1.08005 * 120.00146 * 219.01157 * 4 3 2 6 6 C 1.38809 * 119.99949 * 39.00684 * 4 3 2 7 7 N 1.31621 * 119.99953 * 26.32151 * 6 4 3 8 8 Si 1.86804 * 120.00233 * 206.04019 * 6 4 3 9 9 H 1.48501 * 109.46740 * 90.00391 * 8 6 4 10 10 H 1.48494 * 109.47154 * 210.00007 * 8 6 4 11 11 H 1.48496 * 109.46878 * 330.00557 * 8 6 4 12 12 C 1.46499 * 119.99804 * 275.55795 * 3 2 1 13 13 C 1.53005 * 109.46913 * 269.99586 * 12 3 2 14 14 N 1.46499 * 109.46913 * 180.02562 * 13 12 3 15 15 C 1.34779 * 119.99735 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00127 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00059 * 179.97438 * 15 14 13 18 18 H 1.09006 * 115.55607 * 34.35179 * 17 15 14 19 19 C 1.53119 * 117.51605 * 248.61236 * 17 15 14 20 20 C 1.52459 * 117.51459 * 180.14805 * 17 15 14 21 21 C 1.53257 * 128.58327 * 349.85005 * 20 17 15 22 22 C 1.53894 * 86.88269 * 194.88971 * 21 20 17 23 23 C 1.53263 * 128.58594 * 225.05352 * 20 17 15 24 24 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47608 * 300.00575 * 1 2 3 26 26 H 1.09004 * 109.47447 * 59.99969 * 1 2 3 27 27 H 1.09002 * 109.47044 * 240.00115 * 2 1 3 28 28 H 1.08999 * 109.47008 * 119.99880 * 2 1 3 29 29 H 0.97002 * 120.00075 * 5.08289 * 7 6 4 30 30 H 1.09001 * 109.47369 * 29.99188 * 12 3 2 31 31 H 1.08996 * 109.47201 * 149.99786 * 12 3 2 32 32 H 1.08993 * 109.47073 * 300.00009 * 13 12 3 33 33 H 1.08996 * 109.47023 * 60.00091 * 13 12 3 34 34 H 0.96997 * 120.00226 * 0.02562 * 14 13 12 35 35 H 1.09002 * 117.51396 * 359.97438 * 19 17 15 36 36 H 1.09005 * 117.51285 * 145.06352 * 19 17 15 37 37 H 1.08999 * 113.64614 * 309.38206 * 21 20 17 38 38 H 1.09000 * 113.64736 * 80.39202 * 21 20 17 39 39 H 1.09003 * 113.58740 * 270.39301 * 22 21 20 40 40 H 1.08999 * 113.65992 * 139.58630 * 22 21 20 41 41 H 1.09010 * 113.64255 * 279.60926 * 23 20 17 42 42 H 1.08999 * 113.64720 * 50.61048 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3548 1.9885 1.1803 5 1 2.1116 3.0285 1.3411 6 6 3.0082 1.2675 2.1702 7 7 3.7517 0.2306 1.8470 8 14 2.8387 1.7734 3.9604 9 1 1.6768 1.0734 4.5647 10 1 4.0749 1.4076 4.6974 11 1 2.6296 3.2413 4.0422 12 6 2.1467 2.1127 -1.2628 13 6 3.5450 1.8888 -1.8420 14 7 3.6736 2.6208 -3.1045 15 6 4.8281 2.5706 -3.7980 16 8 5.7605 1.9190 -3.3772 17 6 4.9602 3.3231 -5.0970 18 1 4.4247 4.2711 -5.1478 19 6 5.0650 2.5000 -6.3839 20 6 6.2899 3.2239 -5.8363 21 6 7.6136 2.6267 -5.3465 22 6 8.2808 3.3498 -6.5299 23 6 7.1078 4.3450 -6.4868 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9030 0.0144 0.9135 30 1 1.3989 1.7523 -1.9692 31 1 1.9939 3.1769 -1.0834 32 1 4.2928 2.2492 -1.1357 33 1 3.6978 0.8246 -2.0214 34 1 2.9280 3.1423 -3.4409 35 1 5.0387 1.4142 -6.2907 36 1 4.5983 2.9066 -7.2811 37 1 7.9280 3.0007 -4.3722 38 1 7.6560 1.5399 -5.4182 39 1 8.3142 2.7543 -7.4422 40 1 9.2428 3.7985 -6.2822 41 1 6.7445 4.6356 -7.4726 42 1 7.2814 5.1972 -5.8298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567345188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:54 Heat of formation + Delta-G solvation = 19.740704 kcal Electronic energy + Delta-G solvation = -20247.742033 eV Core-core repulsion = 17229.613036 eV Total energy + Delta-G solvation = -3018.128996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23660 -38.31744 -36.45360 -34.24316 -33.70232 -31.47936 -30.14469 -27.40823 -25.74927 -24.41447 -23.48589 -23.15858 -22.03163 -20.26863 -19.77712 -18.41545 -17.29649 -16.80100 -15.85910 -15.31826 -15.16307 -14.84020 -14.29400 -14.03830 -14.00356 -13.57087 -12.88606 -12.85949 -12.60414 -12.36466 -12.25962 -12.05666 -11.64708 -11.53754 -11.26387 -10.96255 -10.83420 -10.69941 -10.46713 -10.42200 -10.16421 -10.07392 -9.98217 -9.83904 -9.44474 -9.31874 -8.58931 -8.36347 -6.86102 -6.07618 -3.41895 2.74641 3.40145 3.50432 3.51447 3.68516 3.72779 4.33131 4.52327 4.58163 4.69396 4.70064 4.81232 5.15238 5.25300 5.28219 5.45812 5.47270 5.51995 5.59849 5.72016 5.76111 5.81772 5.85873 5.96291 6.08305 6.09767 6.22788 6.23522 6.34215 6.37452 6.45602 6.63905 6.70216 6.76270 6.97365 7.05215 7.28992 7.87474 8.10905 8.56919 8.59511 9.10019 9.78578 10.24555 11.13468 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.003823 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.598189 B = 7323.287364 C = 7881.643166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 N -0.588 5.588 4 C -0.362 4.362 5 H 0.051 0.949 6 C -0.013 4.013 7 N -0.899 5.899 8 Si 1.066 2.934 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.140 3.860 13 C 0.099 3.901 14 N -0.723 5.723 15 C 0.534 3.466 16 O -0.537 6.537 17 C -0.178 4.178 18 H 0.120 0.880 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.082 4.082 22 C -0.142 4.142 23 C -0.099 4.099 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.025 0.975 28 H 0.076 0.924 29 H 0.271 0.729 30 H 0.038 0.962 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.394 0.606 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 6.357 -16.867 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.310 5.310 4 C -0.491 4.491 5 H 0.069 0.931 6 C -0.218 4.218 7 N -0.536 5.536 8 Si 0.896 3.104 9 H -0.219 1.219 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.013 3.987 13 C -0.027 4.027 14 N -0.373 5.373 15 C 0.320 3.680 16 O -0.414 6.414 17 C -0.199 4.199 18 H 0.138 0.862 19 C -0.161 4.161 20 C -0.128 4.128 21 C -0.120 4.120 22 C -0.180 4.180 23 C -0.136 4.136 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.360 5.454 -14.940 16.078 hybrid contribution -0.934 0.763 -1.710 2.092 sum 1.426 6.216 -16.649 17.829 Atomic orbital electron populations 1.22240 0.99869 0.99078 1.00818 1.20909 0.91275 0.86584 1.00317 1.43872 1.73998 1.11783 1.01299 1.19847 1.37519 0.98211 0.93534 0.93133 1.26014 0.92935 0.97826 1.05022 1.70745 1.31373 1.30208 1.21283 0.83508 0.76239 0.75166 0.75493 1.21852 1.21521 1.21717 1.21091 0.91807 0.96946 0.88873 1.22384 1.01830 0.95612 0.82847 1.46126 1.14871 1.51766 1.24572 1.19629 0.82735 0.81128 0.84530 1.90699 1.38749 1.42302 1.69674 1.22200 1.03855 1.01727 0.92123 0.86211 1.22769 0.99190 0.99088 0.95040 1.22262 0.88627 1.00596 1.01317 1.22319 0.91681 1.00132 0.97822 1.22817 0.97375 0.98474 0.99315 1.22503 0.95279 0.95815 0.99977 0.94395 0.92836 0.94550 0.95707 0.90566 0.91842 0.94342 0.93313 0.91359 0.92702 0.77259 0.88151 0.87821 0.89345 0.91299 0.90276 0.91320 0.91400 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.23 37.15 0.38 -2.78 16 2 C 0.14 3.12 5.48 -4.04 -0.02 3.10 16 3 N -0.59 -14.38 2.17 -173.24 -0.38 -14.76 16 4 C -0.36 -9.94 9.36 -15.06 -0.14 -10.08 16 5 H 0.05 1.42 7.95 -52.48 -0.42 1.00 16 6 C -0.01 -0.37 4.73 -17.43 -0.08 -0.45 16 7 N -0.90 -26.85 12.36 55.49 0.69 -26.16 16 8 Si 1.07 25.21 29.99 -169.99 -5.10 20.11 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.14 2.85 5.80 -4.04 -0.02 2.83 16 13 C 0.10 2.01 6.00 -4.04 -0.02 1.99 16 14 N -0.72 -11.61 5.56 -60.30 -0.33 -11.94 16 15 C 0.53 8.93 7.61 -10.99 -0.08 8.85 16 16 O -0.54 -11.24 15.14 5.55 0.08 -11.16 16 17 C -0.18 -2.18 6.19 -91.99 -0.57 -2.75 16 18 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.12 -1.29 10.24 -26.95 -0.28 -1.57 16 20 C -0.13 -1.48 2.88 -154.80 -0.45 -1.92 16 21 C -0.08 -1.04 6.47 -26.13 -0.17 -1.21 16 22 C -0.14 -1.34 8.08 -25.81 -0.21 -1.55 16 23 C -0.10 -0.91 8.10 -26.13 -0.21 -1.12 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.02 0.54 8.11 -51.93 -0.42 0.12 16 28 H 0.08 2.00 5.83 -51.93 -0.30 1.69 16 29 H 0.27 8.23 7.40 -40.82 -0.30 7.93 16 30 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.05 0.97 8.04 -51.93 -0.42 0.56 16 32 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 4.97 8.47 -40.82 -0.35 4.62 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.26 8.05 -51.93 -0.42 0.85 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -31.81 345.48 -9.05 -40.86 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.34 Total: 4.51 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -1.88 Total: -6.67 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.03 Total: -52.87 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.10 Total: 20.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.81 -9.05 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567345188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.599 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds