Wall clock time and date at job start Mon Mar 30 2020 00:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 109.47379 * 2 1 4 4 C 1.36932 * 120.00123 * 95.55187 * 3 2 1 5 5 H 1.08005 * 120.00146 * 219.01157 * 4 3 2 6 6 C 1.38809 * 119.99949 * 39.00684 * 4 3 2 7 7 N 1.31621 * 119.99953 * 26.32151 * 6 4 3 8 8 Si 1.86804 * 120.00233 * 206.04019 * 6 4 3 9 9 H 1.48501 * 109.46740 * 90.00391 * 8 6 4 10 10 H 1.48494 * 109.47154 * 210.00007 * 8 6 4 11 11 H 1.48496 * 109.46878 * 330.00557 * 8 6 4 12 12 C 1.46499 * 119.99804 * 275.55795 * 3 2 1 13 13 C 1.53005 * 109.46913 * 269.99586 * 12 3 2 14 14 N 1.46499 * 109.46913 * 180.02562 * 13 12 3 15 15 C 1.34779 * 119.99735 * 179.97438 * 14 13 12 16 16 O 1.21285 * 120.00127 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00059 * 179.97438 * 15 14 13 18 18 H 1.09006 * 115.55607 * 34.35179 * 17 15 14 19 19 C 1.53119 * 117.51605 * 248.61236 * 17 15 14 20 20 C 1.52459 * 117.51459 * 180.14805 * 17 15 14 21 21 C 1.53257 * 128.58327 * 349.85005 * 20 17 15 22 22 C 1.53894 * 86.88269 * 194.88971 * 21 20 17 23 23 C 1.53263 * 128.58594 * 225.05352 * 20 17 15 24 24 H 1.09000 * 109.47384 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47608 * 300.00575 * 1 2 3 26 26 H 1.09004 * 109.47447 * 59.99969 * 1 2 3 27 27 H 1.09002 * 109.47044 * 240.00115 * 2 1 3 28 28 H 1.08999 * 109.47008 * 119.99880 * 2 1 3 29 29 H 0.97002 * 120.00075 * 5.08289 * 7 6 4 30 30 H 1.09001 * 109.47369 * 29.99188 * 12 3 2 31 31 H 1.08996 * 109.47201 * 149.99786 * 12 3 2 32 32 H 1.08993 * 109.47073 * 300.00009 * 13 12 3 33 33 H 1.08996 * 109.47023 * 60.00091 * 13 12 3 34 34 H 0.96997 * 120.00226 * 0.02562 * 14 13 12 35 35 H 1.09002 * 117.51396 * 359.97438 * 19 17 15 36 36 H 1.09005 * 117.51285 * 145.06352 * 19 17 15 37 37 H 1.08999 * 113.64614 * 309.38206 * 21 20 17 38 38 H 1.09000 * 113.64736 * 80.39202 * 21 20 17 39 39 H 1.09003 * 113.58740 * 270.39301 * 22 21 20 40 40 H 1.08999 * 113.65992 * 139.58630 * 22 21 20 41 41 H 1.09010 * 113.64255 * 279.60926 * 23 20 17 42 42 H 1.08999 * 113.64720 * 50.61048 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3548 1.9885 1.1803 5 1 2.1116 3.0285 1.3411 6 6 3.0082 1.2675 2.1702 7 7 3.7517 0.2306 1.8470 8 14 2.8387 1.7734 3.9604 9 1 1.6768 1.0734 4.5647 10 1 4.0749 1.4076 4.6974 11 1 2.6296 3.2413 4.0422 12 6 2.1467 2.1127 -1.2628 13 6 3.5450 1.8888 -1.8420 14 7 3.6736 2.6208 -3.1045 15 6 4.8281 2.5706 -3.7980 16 8 5.7605 1.9190 -3.3772 17 6 4.9602 3.3231 -5.0970 18 1 4.4247 4.2711 -5.1478 19 6 5.0650 2.5000 -6.3839 20 6 6.2899 3.2239 -5.8363 21 6 7.6136 2.6267 -5.3465 22 6 8.2808 3.3498 -6.5299 23 6 7.1078 4.3450 -6.4868 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9030 0.0144 0.9135 30 1 1.3989 1.7523 -1.9692 31 1 1.9939 3.1769 -1.0834 32 1 4.2928 2.2492 -1.1357 33 1 3.6978 0.8246 -2.0214 34 1 2.9280 3.1423 -3.4409 35 1 5.0387 1.4142 -6.2907 36 1 4.5983 2.9066 -7.2811 37 1 7.9280 3.0007 -4.3722 38 1 7.6560 1.5399 -5.4182 39 1 8.3142 2.7543 -7.4422 40 1 9.2428 3.7985 -6.2822 41 1 6.7445 4.6356 -7.4726 42 1 7.2814 5.1972 -5.8298 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567345188.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:54 Heat of formation + Delta-G solvation = 0.292482 kcal Electronic energy + Delta-G solvation = -20248.585371 eV Core-core repulsion = 17229.613036 eV Total energy + Delta-G solvation = -3018.972335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.36246 -39.52239 -38.28209 -35.86528 -34.64474 -33.50026 -31.81134 -29.19578 -26.61084 -26.10046 -25.08655 -23.97149 -23.58497 -22.00886 -21.19846 -19.41849 -19.15964 -18.12338 -17.15961 -16.71268 -16.23896 -16.12788 -15.97798 -15.68648 -15.52086 -15.33811 -14.55100 -14.50426 -14.03300 -13.74161 -13.26241 -13.04733 -13.01565 -12.73866 -12.62048 -12.56853 -12.45029 -12.34612 -12.20212 -11.91722 -11.80784 -11.33722 -11.29861 -11.05450 -10.86293 -10.63966 -10.47678 -10.13531 -8.93304 -8.22817 -5.58892 1.47948 1.56924 1.63814 1.81479 2.09199 2.64175 2.75792 3.17920 3.36998 3.61559 3.66561 3.78516 3.86857 3.94774 4.08164 4.10853 4.25248 4.34497 4.48978 4.53218 4.62178 4.72781 4.77140 4.78198 4.83261 4.87130 4.93178 5.00327 5.02585 5.07652 5.08069 5.13703 5.29086 5.37709 5.42522 5.49967 5.51173 5.92908 6.35488 6.57596 7.07513 7.27417 7.72185 8.17133 8.91579 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.003823 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.598189 B = 7323.287364 C = 7881.643166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.134 3.866 3 N -0.605 5.605 4 C -0.363 4.363 5 H 0.045 0.955 6 C -0.064 4.064 7 N -0.927 5.927 8 Si 1.113 2.887 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.272 1.272 12 C 0.145 3.855 13 C 0.122 3.878 14 N -0.709 5.709 15 C 0.527 3.473 16 O -0.589 6.589 17 C -0.183 4.183 18 H 0.153 0.847 19 C -0.103 4.103 20 C -0.140 4.140 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.084 4.084 24 H 0.062 0.938 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.040 0.960 29 H 0.252 0.748 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.029 0.971 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.143 0.857 37 H 0.059 0.941 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 8.185 -19.195 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 N -0.327 5.327 4 C -0.493 4.493 5 H 0.063 0.937 6 C -0.263 4.263 7 N -0.567 5.567 8 Si 0.937 3.063 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.197 1.197 12 C 0.019 3.981 13 C -0.005 4.005 14 N -0.361 5.361 15 C 0.315 3.685 16 O -0.470 6.470 17 C -0.204 4.204 18 H 0.171 0.829 19 C -0.140 4.140 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.168 4.168 23 C -0.121 4.121 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.603 7.317 -17.315 18.808 hybrid contribution -0.377 0.164 -1.044 1.122 sum 0.226 7.481 -18.359 19.826 Atomic orbital electron populations 1.22059 0.96613 1.00820 1.01056 1.20888 0.93726 0.85691 0.98871 1.44098 1.74367 1.12296 1.01985 1.20037 1.36263 0.98064 0.94891 0.93743 1.27315 0.92518 0.97667 1.08764 1.70880 1.33820 1.32068 1.19906 0.82893 0.76138 0.76046 0.71180 1.20502 1.22313 1.19651 1.21149 0.92086 0.96994 0.87897 1.21791 1.00606 0.94278 0.83856 1.45879 1.15885 1.51409 1.22947 1.20555 0.81723 0.80479 0.85785 1.90686 1.40448 1.44603 1.71219 1.22208 1.05434 1.02794 0.89990 0.82925 1.22900 0.97849 0.98216 0.95051 1.22516 0.88116 1.01890 1.01547 1.22329 0.94352 0.99079 0.98096 1.22800 0.97912 0.98085 0.97971 1.22474 0.93829 0.94822 1.01019 0.91942 0.94227 0.92523 0.95158 0.94169 0.93791 0.91023 0.92567 0.96212 0.95261 0.74700 0.89681 0.83889 0.92218 0.93494 0.88845 0.90519 0.88671 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.48 10.23 71.98 0.74 -4.75 16 2 C 0.13 6.21 5.48 86.38 0.47 6.69 16 3 N -0.60 -29.83 2.17 -702.00 -1.52 -31.36 16 4 C -0.36 -20.20 9.36 84.03 0.79 -19.41 16 5 H 0.04 2.50 7.95 -2.91 -0.02 2.48 16 6 C -0.06 -3.67 4.73 84.86 0.40 -3.27 16 7 N -0.93 -57.63 12.36 21.65 0.27 -57.37 16 8 Si 1.11 51.43 29.99 68.60 2.06 53.49 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 12 C 0.15 5.81 5.80 86.38 0.50 6.31 16 13 C 0.12 5.12 6.00 86.38 0.52 5.64 16 14 N -0.71 -22.50 5.56 -463.06 -2.57 -25.07 16 15 C 0.53 17.73 7.61 87.66 0.67 18.40 16 16 O -0.59 -26.08 15.14 -3.04 -0.05 -26.13 16 17 C -0.18 -4.11 6.19 -11.68 -0.07 -4.18 16 18 H 0.15 2.42 8.14 -2.38 -0.02 2.40 16 19 C -0.10 -1.87 10.24 30.45 0.31 -1.55 16 20 C -0.14 -3.00 2.88 -52.37 -0.15 -3.15 16 21 C -0.10 -2.63 6.47 30.98 0.20 -2.43 16 22 C -0.13 -2.23 8.08 31.19 0.25 -1.98 16 23 C -0.08 -1.30 8.10 30.98 0.25 -1.05 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 28 H 0.04 2.17 5.83 -2.39 -0.01 2.15 16 29 H 0.25 16.23 7.40 -92.71 -0.69 15.54 16 30 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.06 2.17 8.04 -2.39 -0.02 2.15 16 32 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.42 9.56 8.47 -92.71 -0.79 8.77 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.14 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.91 345.48 3.34 -70.56 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.28 Total: 20.59 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.88 Total: -4.72 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -3.83 Total: -113.79 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.06 Total: 53.49 kcal Total: -73.91 3.34 -70.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567345188.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.857 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds