Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36933 * 119.99928 * 2 1 4 4 H 1.08002 * 119.99504 * 203.87050 * 3 2 1 5 5 C 1.38809 * 120.00445 * 23.86887 * 3 2 1 6 6 N 1.31620 * 119.99673 * 11.01245 * 5 3 2 7 7 Si 1.86802 * 120.00209 * 191.01179 * 5 3 2 8 8 H 1.48500 * 109.46897 * 59.99798 * 7 5 3 9 9 H 1.48504 * 109.46959 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46729 * 299.99842 * 7 5 3 11 11 C 1.46497 * 119.99716 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47063 * 269.99821 * 11 2 1 13 13 N 1.46501 * 109.47448 * 180.02562 * 12 11 2 14 14 C 1.46511 * 119.99695 * 270.27499 * 13 12 11 15 15 C 1.34768 * 120.00336 * 89.99260 * 13 12 11 16 16 O 1.21279 * 120.00195 * 354.86774 * 15 13 12 17 17 C 1.50700 * 120.00015 * 174.85898 * 15 13 12 18 18 C 1.53007 * 115.55231 * 193.27415 * 17 15 13 19 19 C 1.53005 * 117.49559 * 34.33276 * 18 17 15 20 20 C 1.53002 * 117.49593 * 325.67604 * 18 17 15 21 21 C 1.53001 * 117.50000 * 47.61076 * 17 15 13 22 22 C 1.53002 * 117.50223 * 338.94795 * 17 15 13 23 23 H 1.09008 * 109.46758 * 275.12162 * 1 2 3 24 24 H 1.09003 * 109.46939 * 35.11320 * 1 2 3 25 25 H 1.08997 * 109.47452 * 155.12209 * 1 2 3 26 26 H 0.97001 * 119.99960 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47281 * 149.99437 * 11 2 1 28 28 H 1.09002 * 109.47572 * 29.99389 * 11 2 1 29 29 H 1.08996 * 109.47547 * 60.00203 * 12 11 2 30 30 H 1.09001 * 109.47272 * 299.99919 * 12 11 2 31 31 H 1.08997 * 109.46555 * 271.18393 * 14 13 12 32 32 H 1.08994 * 109.46798 * 31.18390 * 14 13 12 33 33 H 1.09001 * 109.46997 * 151.18266 * 14 13 12 34 34 H 1.09003 * 115.55131 * 180.02562 * 18 17 15 35 35 H 1.08999 * 117.49525 * 0.02562 * 19 18 17 36 36 H 1.09001 * 117.49582 * 145.02087 * 19 18 17 37 37 H 1.09000 * 117.49662 * 214.98018 * 20 18 17 38 38 H 1.09000 * 117.50294 * 359.97095 * 20 18 17 39 39 H 1.09007 * 117.49609 * 359.97438 * 21 17 15 40 40 H 1.08997 * 117.50341 * 145.01521 * 21 17 15 41 41 H 1.08995 * 117.49974 * 214.97496 * 22 17 15 42 42 H 1.08996 * 117.49414 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1604 1.2258 -0.3785 5 6 1.5448 2.3366 0.4864 6 7 0.4067 2.2548 1.1425 7 14 2.3458 4.0014 0.2098 8 1 2.4747 4.2525 -1.2481 9 1 1.5065 5.0624 0.8222 10 1 3.6928 4.0124 0.8350 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1855 -2.9795 1.4412 14 6 2.4533 -4.2485 1.4345 15 6 4.5331 -2.9791 1.4413 16 8 5.1392 -1.9328 1.3477 17 6 5.2870 -4.2787 1.5577 18 6 6.7805 -4.1502 1.8645 19 6 7.2193 -2.9955 2.7675 20 6 7.5237 -2.9532 1.2679 21 6 4.8483 -5.4333 0.6548 22 6 4.5438 -5.4756 2.1544 23 1 -0.3633 0.0917 1.0237 24 1 -0.3633 0.8407 -0.5911 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0162 3.0590 1.4821 27 1 3.1498 -1.1383 -0.5144 28 1 1.6084 -2.0282 -0.5146 29 1 1.5002 -1.8416 1.9555 30 1 3.0416 -0.9516 1.9559 31 1 2.2490 -4.5555 2.4602 32 1 1.5126 -4.1223 0.8987 33 1 3.0538 -5.0118 0.9395 34 1 7.3259 -5.0902 1.9483 35 1 6.4440 -2.3279 3.1432 36 1 8.0536 -3.1759 3.4454 37 1 8.5581 -3.1058 0.9599 38 1 6.9489 -2.2577 0.6564 39 1 4.0140 -5.2530 -0.0232 40 1 5.6235 -6.1015 0.2796 41 1 5.1188 -6.1716 2.7651 42 1 3.5097 -5.3229 2.4630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568486612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = 92.310603 kcal Electronic energy + Delta-G solvation = -21179.278976 eV Core-core repulsion = 18164.296846 eV Total energy + Delta-G solvation = -3014.982129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83930 -37.26009 -36.68490 -35.56986 -34.02669 -31.30900 -28.58128 -27.15171 -25.81505 -24.41386 -23.42822 -22.88120 -21.95563 -21.40504 -20.23277 -18.85146 -16.68706 -16.37624 -15.97860 -15.43243 -15.14597 -14.66075 -14.51337 -13.99014 -13.58116 -13.42116 -13.27474 -12.99319 -12.44126 -12.27034 -12.05169 -11.55401 -11.39048 -11.36123 -11.07662 -10.93616 -10.84748 -10.76643 -10.76172 -10.48549 -10.11003 -9.98371 -9.89963 -9.72911 -9.42890 -9.15128 -8.55937 -8.29413 -6.68544 -5.67195 -3.13959 2.65362 3.26964 3.46212 3.49170 3.52285 3.64794 4.15938 4.31908 4.44138 4.57787 4.81552 4.88367 4.99658 5.14092 5.25910 5.35186 5.39001 5.49381 5.51106 5.56999 5.67409 5.76014 5.80345 5.87260 5.87599 5.89874 6.03404 6.28153 6.32374 6.36999 6.58660 6.68200 6.74610 6.83387 7.09902 7.38718 7.73906 7.74897 7.89282 8.45894 8.53667 9.30115 9.91754 10.40383 11.37949 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.005232 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.651603 B = 5350.151140 C = 6229.729597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.251 4.251 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.911 5.911 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.145 3.855 12 C 0.095 3.905 13 N -0.610 5.610 14 C 0.037 3.963 15 C 0.542 3.458 16 O -0.521 6.521 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.169 4.169 20 C -0.170 4.170 21 C -0.164 4.164 22 C -0.191 4.191 23 H 0.030 0.970 24 H 0.042 0.958 25 H -0.004 1.004 26 H 0.252 0.748 27 H 0.047 0.953 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -18.286 1.577 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.322 5.322 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.557 5.557 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.208 1.208 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.343 5.343 14 C -0.105 4.105 15 C 0.329 3.671 16 O -0.397 6.397 17 C -0.121 4.121 18 C -0.136 4.136 19 C -0.206 4.206 20 C -0.206 4.206 21 C -0.201 4.201 22 C -0.227 4.227 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.157 -17.543 1.588 19.013 hybrid contribution 0.291 0.850 0.133 0.909 sum 7.448 -16.692 1.722 18.360 Atomic orbital electron populations 1.20822 0.82508 0.95380 0.99451 1.43938 1.01856 1.00615 1.85744 1.19209 0.98814 0.85508 1.34530 0.91359 1.25047 0.97784 0.98637 0.98118 1.70042 1.18778 1.27397 1.39450 0.86314 0.78665 0.83642 0.77848 1.21066 1.21652 1.20819 1.21102 0.96019 0.88077 0.93172 1.22602 0.95338 0.83066 1.01857 1.47986 1.05369 1.07738 1.73231 1.22983 0.98596 0.87535 1.01394 1.19449 0.81898 0.89191 0.76543 1.90662 1.66970 1.33172 1.48896 1.20954 0.94628 0.89265 1.07301 1.21350 0.90911 0.94057 1.07234 1.22928 1.03091 1.00893 0.93665 1.23252 0.99853 1.00503 0.97032 1.23288 1.03514 0.99651 0.93635 1.24183 1.03764 0.98977 0.95815 0.95143 0.93905 0.98554 0.93776 0.93478 0.94854 0.91553 0.89800 0.92484 0.91375 0.87962 0.87675 0.88151 0.89602 0.89931 0.86065 0.86935 0.87779 0.88306 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 9.01 59.85 0.54 4.61 16 2 N -0.60 -15.62 2.92 -181.12 -0.53 -16.15 16 3 C -0.25 -7.23 9.66 -15.06 -0.15 -7.38 16 4 H 0.07 1.99 7.85 -52.49 -0.41 1.57 16 5 C 0.00 0.06 5.14 -17.43 -0.09 -0.03 16 6 N -0.91 -27.10 10.65 55.49 0.59 -26.51 16 7 Si 0.91 22.80 29.57 -169.99 -5.03 17.77 16 8 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 C 0.14 3.15 6.03 -4.04 -0.02 3.13 16 12 C 0.10 1.90 5.70 -4.04 -0.02 1.87 16 13 N -0.61 -9.64 2.87 -181.57 -0.52 -10.16 16 14 C 0.04 0.41 8.51 59.85 0.51 0.92 16 15 C 0.54 9.03 7.05 -10.99 -0.08 8.96 16 16 O -0.52 -10.71 11.71 5.56 0.07 -10.64 16 17 C -0.12 -1.47 2.46 -155.66 -0.38 -1.86 16 18 C -0.12 -1.44 5.85 -90.61 -0.53 -1.97 16 19 C -0.17 -2.30 9.69 -26.69 -0.26 -2.56 16 20 C -0.17 -2.35 9.67 -26.69 -0.26 -2.61 16 21 C -0.16 -1.51 9.09 -26.69 -0.24 -1.75 16 22 C -0.19 -1.73 9.08 -26.69 -0.24 -1.97 16 23 H 0.03 0.81 7.33 -51.92 -0.38 0.43 16 24 H 0.04 1.15 7.35 -51.93 -0.38 0.76 16 25 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 1.10 8.03 -51.93 -0.42 0.68 16 28 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 29 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 30 H 0.08 1.99 7.50 -51.93 -0.39 1.60 16 31 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 32 H 0.07 0.72 8.08 -51.93 -0.42 0.31 16 33 H 0.10 0.91 2.41 -51.93 -0.13 0.78 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 1.64 6.73 -51.93 -0.35 1.29 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.12 2.06 5.84 -51.93 -0.30 1.76 16 39 H 0.11 1.00 6.15 -51.93 -0.32 0.68 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.13 1.11 3.77 -51.93 -0.20 0.92 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -32.39 326.48 -8.25 -40.64 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.52 Total: 0.78 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.23 Total: -0.65 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.46 Total: -52.82 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.39 -8.25 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568486612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.953 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds