Wall clock time and date at job start Mon Mar 30 2020 01:32:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46506 * 1
3 3 C 1.36933 * 119.99928 * 2 1
4 4 H 1.08002 * 119.99504 * 203.87050 * 3 2 1
5 5 C 1.38809 * 120.00445 * 23.86887 * 3 2 1
6 6 N 1.31620 * 119.99673 * 11.01245 * 5 3 2
7 7 Si 1.86802 * 120.00209 * 191.01179 * 5 3 2
8 8 H 1.48500 * 109.46897 * 59.99798 * 7 5 3
9 9 H 1.48504 * 109.46959 * 179.97438 * 7 5 3
10 10 H 1.48500 * 109.46729 * 299.99842 * 7 5 3
11 11 C 1.46497 * 119.99716 * 180.02562 * 2 1 3
12 12 C 1.52997 * 109.47063 * 269.99821 * 11 2 1
13 13 N 1.46501 * 109.47448 * 180.02562 * 12 11 2
14 14 C 1.46511 * 119.99695 * 270.27499 * 13 12 11
15 15 C 1.34768 * 120.00336 * 89.99260 * 13 12 11
16 16 O 1.21279 * 120.00195 * 354.86774 * 15 13 12
17 17 C 1.50700 * 120.00015 * 174.85898 * 15 13 12
18 18 C 1.53007 * 115.55231 * 193.27415 * 17 15 13
19 19 C 1.53005 * 117.49559 * 34.33276 * 18 17 15
20 20 C 1.53002 * 117.49593 * 325.67604 * 18 17 15
21 21 C 1.53001 * 117.50000 * 47.61076 * 17 15 13
22 22 C 1.53002 * 117.50223 * 338.94795 * 17 15 13
23 23 H 1.09008 * 109.46758 * 275.12162 * 1 2 3
24 24 H 1.09003 * 109.46939 * 35.11320 * 1 2 3
25 25 H 1.08997 * 109.47452 * 155.12209 * 1 2 3
26 26 H 0.97001 * 119.99960 * 180.02562 * 6 5 3
27 27 H 1.08997 * 109.47281 * 149.99437 * 11 2 1
28 28 H 1.09002 * 109.47572 * 29.99389 * 11 2 1
29 29 H 1.08996 * 109.47547 * 60.00203 * 12 11 2
30 30 H 1.09001 * 109.47272 * 299.99919 * 12 11 2
31 31 H 1.08997 * 109.46555 * 271.18393 * 14 13 12
32 32 H 1.08994 * 109.46798 * 31.18390 * 14 13 12
33 33 H 1.09001 * 109.46997 * 151.18266 * 14 13 12
34 34 H 1.09003 * 115.55131 * 180.02562 * 18 17 15
35 35 H 1.08999 * 117.49525 * 0.02562 * 19 18 17
36 36 H 1.09001 * 117.49582 * 145.02087 * 19 18 17
37 37 H 1.09000 * 117.49662 * 214.98018 * 20 18 17
38 38 H 1.09000 * 117.50294 * 359.97095 * 20 18 17
39 39 H 1.09007 * 117.49609 * 359.97438 * 21 17 15
40 40 H 1.08997 * 117.50341 * 145.01521 * 21 17 15
41 41 H 1.08995 * 117.49974 * 214.97496 * 22 17 15
42 42 H 1.08996 * 117.49414 * 359.97438 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1604 1.2258 -0.3785
5 6 1.5448 2.3366 0.4864
6 7 0.4067 2.2548 1.1425
7 14 2.3458 4.0014 0.2098
8 1 2.4747 4.2525 -1.2481
9 1 1.5065 5.0624 0.8222
10 1 3.6928 4.0124 0.8350
11 6 2.1975 -1.2687 -0.0006
12 6 2.4525 -1.7110 1.4417
13 7 3.1855 -2.9795 1.4412
14 6 2.4533 -4.2485 1.4345
15 6 4.5331 -2.9791 1.4413
16 8 5.1392 -1.9328 1.3477
17 6 5.2870 -4.2787 1.5577
18 6 6.7805 -4.1502 1.8645
19 6 7.2193 -2.9955 2.7675
20 6 7.5237 -2.9532 1.2679
21 6 4.8483 -5.4333 0.6548
22 6 4.5438 -5.4756 2.1544
23 1 -0.3633 0.0917 1.0237
24 1 -0.3633 0.8407 -0.5911
25 1 -0.3634 -0.9323 -0.4323
26 1 -0.0162 3.0590 1.4821
27 1 3.1498 -1.1383 -0.5144
28 1 1.6084 -2.0282 -0.5146
29 1 1.5002 -1.8416 1.9555
30 1 3.0416 -0.9516 1.9559
31 1 2.2490 -4.5555 2.4602
32 1 1.5126 -4.1223 0.8987
33 1 3.0538 -5.0118 0.9395
34 1 7.3259 -5.0902 1.9483
35 1 6.4440 -2.3279 3.1432
36 1 8.0536 -3.1759 3.4454
37 1 8.5581 -3.1058 0.9599
38 1 6.9489 -2.2577 0.6564
39 1 4.0140 -5.2530 -0.0232
40 1 5.6235 -6.1015 0.2796
41 1 5.1188 -6.1716 2.7651
42 1 3.5097 -5.3229 2.4630
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568486612.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:13
Heat of formation + Delta-G solvation = 92.310603 kcal
Electronic energy + Delta-G solvation = -21179.278976 eV
Core-core repulsion = 18164.296846 eV
Total energy + Delta-G solvation = -3014.982129 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.83930 -37.26009 -36.68490 -35.56986 -34.02669 -31.30900 -28.58128 -27.15171
-25.81505 -24.41386 -23.42822 -22.88120 -21.95563 -21.40504 -20.23277 -18.85146
-16.68706 -16.37624 -15.97860 -15.43243 -15.14597 -14.66075 -14.51337 -13.99014
-13.58116 -13.42116 -13.27474 -12.99319 -12.44126 -12.27034 -12.05169 -11.55401
-11.39048 -11.36123 -11.07662 -10.93616 -10.84748 -10.76643 -10.76172 -10.48549
-10.11003 -9.98371 -9.89963 -9.72911 -9.42890 -9.15128 -8.55937 -8.29413
-6.68544 -5.67195 -3.13959 2.65362 3.26964 3.46212 3.49170 3.52285
3.64794 4.15938 4.31908 4.44138 4.57787 4.81552 4.88367 4.99658
5.14092 5.25910 5.35186 5.39001 5.49381 5.51106 5.56999 5.67409
5.76014 5.80345 5.87260 5.87599 5.89874 6.03404 6.28153 6.32374
6.36999 6.58660 6.68200 6.74610 6.83387 7.09902 7.38718 7.73906
7.74897 7.89282 8.45894 8.53667 9.30115 9.91754 10.40383 11.37949
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.023452 B = 0.005232 C = 0.004493
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1193.651603 B = 5350.151140 C = 6229.729597
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.163 3.837
2 N -0.599 5.599
3 C -0.251 4.251
4 H 0.069 0.931
5 C 0.002 3.998
6 N -0.911 5.911
7 Si 0.905 3.095
8 H -0.284 1.284
9 H -0.291 1.291
10 H -0.282 1.282
11 C 0.145 3.855
12 C 0.095 3.905
13 N -0.610 5.610
14 C 0.037 3.963
15 C 0.542 3.458
16 O -0.521 6.521
17 C -0.118 4.118
18 C -0.117 4.117
19 C -0.169 4.169
20 C -0.170 4.170
21 C -0.164 4.164
22 C -0.191 4.191
23 H 0.030 0.970
24 H 0.042 0.958
25 H -0.004 1.004
26 H 0.252 0.748
27 H 0.047 0.953
28 H 0.033 0.967
29 H 0.066 0.934
30 H 0.084 0.916
31 H 0.057 0.943
32 H 0.068 0.932
33 H 0.103 0.897
34 H 0.105 0.895
35 H 0.100 0.900
36 H 0.086 0.914
37 H 0.082 0.918
38 H 0.121 0.879
39 H 0.113 0.887
40 H 0.104 0.896
41 H 0.099 0.901
42 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.986 -18.286 1.577 19.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.322 5.322
3 C -0.381 4.381
4 H 0.086 0.914
5 C -0.196 4.196
6 N -0.557 5.557
7 Si 0.735 3.265
8 H -0.211 1.211
9 H -0.217 1.217
10 H -0.208 1.208
11 C 0.016 3.984
12 C -0.029 4.029
13 N -0.343 5.343
14 C -0.105 4.105
15 C 0.329 3.671
16 O -0.397 6.397
17 C -0.121 4.121
18 C -0.136 4.136
19 C -0.206 4.206
20 C -0.206 4.206
21 C -0.201 4.201
22 C -0.227 4.227
23 H 0.049 0.951
24 H 0.061 0.939
25 H 0.014 0.986
26 H 0.062 0.938
27 H 0.065 0.935
28 H 0.051 0.949
29 H 0.084 0.916
30 H 0.102 0.898
31 H 0.075 0.925
32 H 0.086 0.914
33 H 0.120 0.880
34 H 0.123 0.877
35 H 0.118 0.882
36 H 0.104 0.896
37 H 0.101 0.899
38 H 0.139 0.861
39 H 0.131 0.869
40 H 0.122 0.878
41 H 0.117 0.883
42 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 7.157 -17.543 1.588 19.013
hybrid contribution 0.291 0.850 0.133 0.909
sum 7.448 -16.692 1.722 18.360
Atomic orbital electron populations
1.20822 0.82508 0.95380 0.99451 1.43938 1.01856 1.00615 1.85744
1.19209 0.98814 0.85508 1.34530 0.91359 1.25047 0.97784 0.98637
0.98118 1.70042 1.18778 1.27397 1.39450 0.86314 0.78665 0.83642
0.77848 1.21066 1.21652 1.20819 1.21102 0.96019 0.88077 0.93172
1.22602 0.95338 0.83066 1.01857 1.47986 1.05369 1.07738 1.73231
1.22983 0.98596 0.87535 1.01394 1.19449 0.81898 0.89191 0.76543
1.90662 1.66970 1.33172 1.48896 1.20954 0.94628 0.89265 1.07301
1.21350 0.90911 0.94057 1.07234 1.22928 1.03091 1.00893 0.93665
1.23252 0.99853 1.00503 0.97032 1.23288 1.03514 0.99651 0.93635
1.24183 1.03764 0.98977 0.95815 0.95143 0.93905 0.98554 0.93776
0.93478 0.94854 0.91553 0.89800 0.92484 0.91375 0.87962 0.87675
0.88151 0.89602 0.89931 0.86065 0.86935 0.87779 0.88306 0.85090
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.07 9.01 59.85 0.54 4.61 16
2 N -0.60 -15.62 2.92 -181.12 -0.53 -16.15 16
3 C -0.25 -7.23 9.66 -15.06 -0.15 -7.38 16
4 H 0.07 1.99 7.85 -52.49 -0.41 1.57 16
5 C 0.00 0.06 5.14 -17.43 -0.09 -0.03 16
6 N -0.91 -27.10 10.65 55.49 0.59 -26.51 16
7 Si 0.91 22.80 29.57 -169.99 -5.03 17.77 16
8 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16
11 C 0.14 3.15 6.03 -4.04 -0.02 3.13 16
12 C 0.10 1.90 5.70 -4.04 -0.02 1.87 16
13 N -0.61 -9.64 2.87 -181.57 -0.52 -10.16 16
14 C 0.04 0.41 8.51 59.85 0.51 0.92 16
15 C 0.54 9.03 7.05 -10.99 -0.08 8.96 16
16 O -0.52 -10.71 11.71 5.56 0.07 -10.64 16
17 C -0.12 -1.47 2.46 -155.66 -0.38 -1.86 16
18 C -0.12 -1.44 5.85 -90.61 -0.53 -1.97 16
19 C -0.17 -2.30 9.69 -26.69 -0.26 -2.56 16
20 C -0.17 -2.35 9.67 -26.69 -0.26 -2.61 16
21 C -0.16 -1.51 9.09 -26.69 -0.24 -1.75 16
22 C -0.19 -1.73 9.08 -26.69 -0.24 -1.97 16
23 H 0.03 0.81 7.33 -51.92 -0.38 0.43 16
24 H 0.04 1.15 7.35 -51.93 -0.38 0.76 16
25 H 0.00 -0.09 7.83 -51.93 -0.41 -0.49 16
26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
27 H 0.05 1.10 8.03 -51.93 -0.42 0.68 16
28 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16
29 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16
30 H 0.08 1.99 7.50 -51.93 -0.39 1.60 16
31 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16
32 H 0.07 0.72 8.08 -51.93 -0.42 0.31 16
33 H 0.10 0.91 2.41 -51.93 -0.13 0.78 16
34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16
35 H 0.10 1.64 6.73 -51.93 -0.35 1.29 16
36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16
37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
38 H 0.12 2.06 5.84 -51.93 -0.30 1.76 16
39 H 0.11 1.00 6.15 -51.93 -0.32 0.68 16
40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16
42 H 0.13 1.11 3.77 -51.93 -0.20 0.92 16
LS Contribution 326.48 15.07 4.92 4.92
Total: -1.00 -32.39 326.48 -8.25 -40.64
By element:
Atomic # 1 Polarization: 7.30 SS G_CDS: -6.52 Total: 0.78 kcal
Atomic # 6 Polarization: 0.58 SS G_CDS: -1.23 Total: -0.65 kcal
Atomic # 7 Polarization: -52.36 SS G_CDS: -0.46 Total: -52.82 kcal
Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal
Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -32.39 -8.25 -40.64 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568486612.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.953 kcal
(2) G-P(sol) polarization free energy of solvation -32.393 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.311 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds