Wall clock time and date at job start Mon Mar 30 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36933 * 119.99928 * 2 1 4 4 H 1.08002 * 119.99504 * 203.87050 * 3 2 1 5 5 C 1.38809 * 120.00445 * 23.86887 * 3 2 1 6 6 N 1.31620 * 119.99673 * 11.01245 * 5 3 2 7 7 Si 1.86802 * 120.00209 * 191.01179 * 5 3 2 8 8 H 1.48500 * 109.46897 * 59.99798 * 7 5 3 9 9 H 1.48504 * 109.46959 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46729 * 299.99842 * 7 5 3 11 11 C 1.46497 * 119.99716 * 180.02562 * 2 1 3 12 12 C 1.52997 * 109.47063 * 269.99821 * 11 2 1 13 13 N 1.46501 * 109.47448 * 180.02562 * 12 11 2 14 14 C 1.46511 * 119.99695 * 270.27499 * 13 12 11 15 15 C 1.34768 * 120.00336 * 89.99260 * 13 12 11 16 16 O 1.21279 * 120.00195 * 354.86774 * 15 13 12 17 17 C 1.50700 * 120.00015 * 174.85898 * 15 13 12 18 18 C 1.53007 * 115.55231 * 193.27415 * 17 15 13 19 19 C 1.53005 * 117.49559 * 34.33276 * 18 17 15 20 20 C 1.53002 * 117.49593 * 325.67604 * 18 17 15 21 21 C 1.53001 * 117.50000 * 47.61076 * 17 15 13 22 22 C 1.53002 * 117.50223 * 338.94795 * 17 15 13 23 23 H 1.09008 * 109.46758 * 275.12162 * 1 2 3 24 24 H 1.09003 * 109.46939 * 35.11320 * 1 2 3 25 25 H 1.08997 * 109.47452 * 155.12209 * 1 2 3 26 26 H 0.97001 * 119.99960 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47281 * 149.99437 * 11 2 1 28 28 H 1.09002 * 109.47572 * 29.99389 * 11 2 1 29 29 H 1.08996 * 109.47547 * 60.00203 * 12 11 2 30 30 H 1.09001 * 109.47272 * 299.99919 * 12 11 2 31 31 H 1.08997 * 109.46555 * 271.18393 * 14 13 12 32 32 H 1.08994 * 109.46798 * 31.18390 * 14 13 12 33 33 H 1.09001 * 109.46997 * 151.18266 * 14 13 12 34 34 H 1.09003 * 115.55131 * 180.02562 * 18 17 15 35 35 H 1.08999 * 117.49525 * 0.02562 * 19 18 17 36 36 H 1.09001 * 117.49582 * 145.02087 * 19 18 17 37 37 H 1.09000 * 117.49662 * 214.98018 * 20 18 17 38 38 H 1.09000 * 117.50294 * 359.97095 * 20 18 17 39 39 H 1.09007 * 117.49609 * 359.97438 * 21 17 15 40 40 H 1.08997 * 117.50341 * 145.01521 * 21 17 15 41 41 H 1.08995 * 117.49974 * 214.97496 * 22 17 15 42 42 H 1.08996 * 117.49414 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1604 1.2258 -0.3785 5 6 1.5448 2.3366 0.4864 6 7 0.4067 2.2548 1.1425 7 14 2.3458 4.0014 0.2098 8 1 2.4747 4.2525 -1.2481 9 1 1.5065 5.0624 0.8222 10 1 3.6928 4.0124 0.8350 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 7 3.1855 -2.9795 1.4412 14 6 2.4533 -4.2485 1.4345 15 6 4.5331 -2.9791 1.4413 16 8 5.1392 -1.9328 1.3477 17 6 5.2870 -4.2787 1.5577 18 6 6.7805 -4.1502 1.8645 19 6 7.2193 -2.9955 2.7675 20 6 7.5237 -2.9532 1.2679 21 6 4.8483 -5.4333 0.6548 22 6 4.5438 -5.4756 2.1544 23 1 -0.3633 0.0917 1.0237 24 1 -0.3633 0.8407 -0.5911 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0162 3.0590 1.4821 27 1 3.1498 -1.1383 -0.5144 28 1 1.6084 -2.0282 -0.5146 29 1 1.5002 -1.8416 1.9555 30 1 3.0416 -0.9516 1.9559 31 1 2.2490 -4.5555 2.4602 32 1 1.5126 -4.1223 0.8987 33 1 3.0538 -5.0118 0.9395 34 1 7.3259 -5.0902 1.9483 35 1 6.4440 -2.3279 3.1432 36 1 8.0536 -3.1759 3.4454 37 1 8.5581 -3.1058 0.9599 38 1 6.9489 -2.2577 0.6564 39 1 4.0140 -5.2530 -0.0232 40 1 5.6235 -6.1015 0.2796 41 1 5.1188 -6.1716 2.7651 42 1 3.5097 -5.3229 2.4630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568486612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:13 Heat of formation + Delta-G solvation = 72.710374 kcal Electronic energy + Delta-G solvation = -21180.128905 eV Core-core repulsion = 18164.296846 eV Total energy + Delta-G solvation = -3015.832059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93397 -38.51508 -37.91194 -37.28256 -35.35697 -33.35090 -30.23244 -28.26660 -27.95055 -25.90768 -24.64710 -23.67406 -22.96636 -22.92856 -21.86328 -20.02134 -18.83503 -17.55518 -17.07280 -16.92697 -16.51335 -16.14668 -15.85184 -15.47642 -15.08675 -14.91421 -14.53496 -14.35986 -14.09526 -13.89317 -13.27981 -13.22955 -12.86558 -12.78807 -12.50889 -12.39268 -12.32007 -12.15275 -12.10518 -11.99015 -11.81936 -11.67452 -11.62726 -10.93990 -10.71535 -10.43229 -10.34379 -9.68444 -8.78074 -7.88710 -5.38108 1.40668 1.43147 1.49981 1.53151 2.02270 2.47798 2.67671 3.24854 3.26598 3.40792 3.52594 3.73825 3.86680 4.01056 4.13670 4.18728 4.25249 4.35878 4.36685 4.42157 4.57117 4.66842 4.75393 4.81233 4.83142 4.85325 4.86988 4.97311 5.05957 5.13099 5.13940 5.22238 5.29066 5.32290 5.46205 5.55630 5.63069 5.69354 6.28869 6.51186 7.11307 7.27898 7.81174 8.22671 9.13807 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023452 B = 0.005232 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.651603 B = 5350.151140 C = 6229.729597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.616 5.616 3 C -0.267 4.267 4 H 0.054 0.946 5 C -0.046 4.046 6 N -0.933 5.933 7 Si 0.965 3.035 8 H -0.276 1.276 9 H -0.285 1.285 10 H -0.284 1.284 11 C 0.151 3.849 12 C 0.116 3.884 13 N -0.611 5.611 14 C 0.029 3.971 15 C 0.529 3.471 16 O -0.575 6.575 17 C -0.154 4.154 18 C -0.093 4.093 19 C -0.180 4.180 20 C -0.186 4.186 21 C -0.145 4.145 22 C -0.167 4.167 23 H 0.009 0.991 24 H 0.016 0.984 25 H 0.037 0.963 26 H 0.251 0.749 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.129 0.871 34 H 0.143 0.857 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -21.726 1.455 22.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.340 5.340 3 C -0.397 4.397 4 H 0.072 0.928 5 C -0.241 4.241 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.202 1.202 9 H -0.210 1.210 10 H -0.210 1.210 11 C 0.024 3.976 12 C -0.010 4.010 13 N -0.343 5.343 14 C -0.111 4.111 15 C 0.319 3.681 16 O -0.455 6.455 17 C -0.157 4.157 18 C -0.111 4.111 19 C -0.217 4.217 20 C -0.223 4.223 21 C -0.181 4.181 22 C -0.203 4.203 23 H 0.027 0.973 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.407 -21.046 1.462 22.359 hybrid contribution 0.219 1.855 0.151 1.874 sum 7.626 -19.191 1.613 20.714 Atomic orbital electron populations 1.20611 0.81873 0.96306 0.97992 1.44130 1.02499 1.01257 1.86075 1.19346 0.98540 0.87238 1.34567 0.92798 1.25743 0.98506 1.01710 0.98167 1.70182 1.19719 1.27941 1.40125 0.85379 0.77558 0.79729 0.78016 1.20164 1.21022 1.21040 1.21105 0.94928 0.87235 0.94338 1.21937 0.95011 0.84334 0.99715 1.47981 1.05495 1.07885 1.72982 1.23381 0.98856 0.85483 1.03385 1.20379 0.82024 0.90456 0.75212 1.90653 1.68090 1.35636 1.51099 1.20909 0.94529 0.88181 1.12123 1.21550 0.90988 0.94399 1.04152 1.22852 1.03090 1.01928 0.93877 1.23130 1.00815 1.01695 0.96619 1.23464 1.03915 0.96812 0.93907 1.24342 1.03868 0.95976 0.96098 0.97255 0.96513 0.94463 0.94025 0.95890 0.91628 0.90873 0.94835 0.90301 0.90633 0.85330 0.83969 0.92043 0.87276 0.87775 0.90114 0.86462 0.85303 0.85858 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.87 9.01 127.77 1.15 10.02 16 2 N -0.62 -32.89 2.92 -726.93 -2.12 -35.01 16 3 C -0.27 -15.94 9.66 84.03 0.81 -15.13 16 4 H 0.05 3.30 7.85 -2.91 -0.02 3.28 16 5 C -0.05 -2.71 5.14 84.86 0.44 -2.28 16 6 N -0.93 -56.85 10.65 21.65 0.23 -56.62 16 7 Si 0.97 48.06 29.57 68.60 2.03 50.09 16 8 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 9 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 10 H -0.28 -14.13 7.11 99.48 0.71 -13.43 16 11 C 0.15 6.69 6.03 86.38 0.52 7.21 16 12 C 0.12 4.74 5.70 86.38 0.49 5.23 16 13 N -0.61 -19.05 2.87 -846.77 -2.43 -21.48 16 14 C 0.03 0.54 8.51 127.77 1.09 1.63 16 15 C 0.53 17.94 7.05 87.66 0.62 18.56 16 16 O -0.57 -25.51 11.71 -3.03 -0.04 -25.54 16 17 C -0.15 -3.50 2.46 -52.92 -0.13 -3.63 16 18 C -0.09 -2.08 5.85 -10.79 -0.06 -2.15 16 19 C -0.18 -4.97 9.69 30.62 0.30 -4.67 16 20 C -0.19 -5.23 9.67 30.62 0.30 -4.93 16 21 C -0.14 -2.00 9.09 30.62 0.28 -1.72 16 22 C -0.17 -2.23 9.08 30.62 0.28 -1.95 16 23 H 0.01 0.50 7.33 -2.38 -0.02 0.48 16 24 H 0.02 0.89 7.35 -2.39 -0.02 0.87 16 25 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 26 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.02 1.11 8.03 -2.39 -0.02 1.09 16 28 H 0.07 2.46 7.86 -2.39 -0.02 2.44 16 29 H 0.07 2.86 8.07 -2.39 -0.02 2.84 16 30 H 0.03 1.70 7.50 -2.39 -0.02 1.68 16 31 H 0.08 1.18 6.69 -2.39 -0.02 1.17 16 32 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.13 1.73 2.41 -2.39 -0.01 1.72 16 34 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.06 2.17 6.73 -2.39 -0.02 2.15 16 36 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.08 2.98 5.84 -2.39 -0.01 2.97 16 39 H 0.12 1.55 6.15 -2.38 -0.01 1.53 16 40 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.14 1.67 3.77 -2.39 -0.01 1.66 16 Total: -1.00 -76.27 326.48 4.75 -71.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.01 Total: 10.87 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 6.07 Total: 6.18 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.33 Total: -113.12 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.04 Total: -25.54 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -76.27 4.75 -71.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568486612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.238 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds