Wall clock time and date at job start Mon Mar 30 2020 01:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99663 * 2 1 4 4 C 1.53000 * 109.46850 * 270.00118 * 3 2 1 5 5 C 1.53005 * 109.46820 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47148 * 180.02562 * 5 4 3 7 7 C 1.36933 * 120.00143 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99993 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00030 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48510 * 109.47036 * 119.99586 * 11 9 7 14 14 H 1.48504 * 109.47062 * 239.99063 * 11 9 7 15 15 C 1.34770 * 119.99927 * 180.02562 * 2 1 3 16 16 O 1.21281 * 120.00043 * 185.55158 * 15 2 1 17 17 C 1.50704 * 119.99846 * 5.55171 * 15 2 1 18 18 H 1.09002 * 109.81242 * 307.32669 * 17 15 2 19 19 C 1.53022 * 109.64609 * 67.86306 * 17 15 2 20 20 C 1.50062 * 110.03924 * 169.05101 * 19 17 15 21 21 C 1.29445 * 124.07356 * 342.95560 * 20 19 17 22 22 C 1.50063 * 124.07865 * 0.45198 * 21 20 19 23 23 C 1.53028 * 110.14683 * 342.86557 * 22 21 20 24 24 H 1.09007 * 109.46985 * 263.93198 * 1 2 3 25 25 H 1.09000 * 109.47242 * 23.92531 * 1 2 3 26 26 H 1.09001 * 109.47115 * 143.93205 * 1 2 3 27 27 H 1.09000 * 109.47297 * 30.00358 * 3 2 1 28 28 H 1.09003 * 109.46619 * 150.00183 * 3 2 1 29 29 H 1.09009 * 109.47140 * 300.00122 * 4 3 2 30 30 H 1.08997 * 109.47510 * 60.00140 * 4 3 2 31 31 H 1.09000 * 109.46698 * 299.99855 * 5 4 3 32 32 H 1.08997 * 109.47578 * 59.99430 * 5 4 3 33 33 H 0.97001 * 119.99410 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00152 * 180.02562 * 10 9 7 35 35 H 1.09006 * 109.35829 * 48.90824 * 19 17 15 36 36 H 1.09002 * 109.35512 * 289.19007 * 19 17 15 37 37 H 1.07999 * 117.96278 * 162.93575 * 20 19 17 38 38 H 1.08006 * 117.95966 * 180.42560 * 21 20 19 39 39 H 1.08997 * 109.35765 * 103.07078 * 22 21 20 40 40 H 1.08995 * 109.35665 * 222.66154 * 22 21 20 41 41 H 1.08996 * 109.64574 * 169.12003 * 23 22 21 42 42 H 1.08997 * 109.64181 * 289.54423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4615 3.4585 -2.8238 7 6 4.1354 4.6239 -3.0740 8 1 4.4870 5.2314 -2.2531 9 6 4.3657 5.0252 -4.3827 10 7 3.9368 4.2852 -5.3831 11 14 5.2844 6.6155 -4.7241 12 1 5.6565 7.2580 -3.4380 13 1 6.5131 6.3197 -5.5040 14 1 4.4134 7.5331 -5.5017 15 6 2.1389 -1.1672 -0.0005 16 8 3.3474 -1.1697 0.1011 17 6 1.3906 -2.4691 -0.1274 18 1 0.6016 -2.5165 0.6232 19 6 0.7778 -2.5763 -1.5254 20 6 0.2628 -3.9667 -1.7560 21 6 0.6022 -4.9931 -1.0440 22 6 1.5505 -4.9343 0.1175 23 6 2.3606 -3.6369 0.0713 24 1 -0.3633 -0.1086 1.0220 25 1 -0.3634 0.9394 -0.4168 26 1 -0.3633 -0.8307 -0.6050 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0415 0.9507 -1.9564 30 1 1.5000 1.8407 -1.9564 31 1 2.6291 3.7950 -0.9285 32 1 4.1703 2.9046 -0.9288 33 1 3.1460 2.9127 -3.5610 34 1 4.0980 4.5654 -6.2977 35 1 1.5376 -2.3440 -2.2717 36 1 -0.0449 -1.8668 -1.6146 37 1 -0.4346 -4.1206 -2.5661 38 1 0.1759 -5.9515 -1.3017 39 1 0.9847 -4.9740 1.0483 40 1 2.2294 -5.7859 0.0731 41 1 2.9017 -3.5092 1.0088 42 1 3.0676 -3.6757 -0.7574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569181241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:07 Heat of formation + Delta-G solvation = -18.727443 kcal Electronic energy + Delta-G solvation = -20177.743095 eV Core-core repulsion = 17157.945994 eV Total energy + Delta-G solvation = -3019.797100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47728 -37.93693 -36.12108 -34.80989 -32.48773 -31.38721 -31.01968 -29.57172 -26.97061 -25.57694 -23.82475 -23.24884 -22.10140 -20.87519 -19.16835 -18.17993 -17.17417 -17.01130 -16.50149 -15.73562 -15.25047 -14.66833 -14.51896 -14.20316 -13.95507 -13.50520 -13.43072 -13.20649 -13.01528 -12.88525 -12.58483 -12.45521 -12.26770 -11.86365 -11.76726 -11.17529 -10.95264 -10.89261 -10.83590 -10.70219 -10.57059 -10.36576 -10.01700 -9.71519 -9.57967 -9.23736 -8.83735 -8.60756 -6.87750 -5.72569 -3.01117 2.03060 2.62557 3.00500 3.46147 3.51451 3.54054 4.26464 4.42190 4.58550 4.63599 4.79344 4.91274 4.98815 5.08330 5.16695 5.19615 5.26740 5.30523 5.37948 5.48118 5.54851 5.60469 5.62357 5.70059 5.74333 5.82220 5.96494 5.97081 6.12078 6.13071 6.33584 6.38495 6.42366 6.58660 6.68355 6.89836 6.92456 7.38350 7.74142 8.20125 8.46427 9.57296 10.16037 10.50750 11.50636 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.003300 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.489120 B = 8482.559953 C = 8740.064483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.615 5.615 3 C 0.117 3.883 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C 0.516 3.484 16 O -0.534 6.534 17 C -0.105 4.105 18 H 0.095 0.905 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.092 4.092 23 C -0.101 4.101 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.738 -17.911 12.613 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.348 5.348 3 C -0.006 4.006 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.304 3.696 16 O -0.410 6.410 17 C -0.126 4.126 18 H 0.113 0.887 19 C -0.125 4.125 20 C -0.170 4.170 21 C -0.175 4.175 22 C -0.129 4.129 23 C -0.139 4.139 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.004 -17.743 12.711 24.443 hybrid contribution 0.179 0.739 -0.656 1.004 sum -10.825 -17.004 12.055 23.487 Atomic orbital electron populations 1.22079 0.79815 1.04025 1.01759 1.47888 1.06909 1.06353 1.73685 1.21504 0.97616 0.83556 0.97897 1.22056 1.01003 0.98910 0.95726 1.20544 0.96048 0.91914 0.88688 1.42364 1.68297 1.25996 1.01114 1.19300 1.27615 0.98116 0.91836 0.91096 1.24755 1.01792 0.99096 0.95561 1.69679 1.51646 1.38904 0.98110 0.86099 0.79179 0.83081 0.77752 1.20536 1.21854 1.21889 1.20625 0.87910 0.85180 0.75932 1.90711 1.14236 1.87216 1.48812 1.21327 0.99058 0.92947 0.99282 0.88730 1.20602 1.00837 0.95637 0.95470 1.22002 1.00601 0.94270 1.00099 1.22079 0.99363 0.98359 0.97737 1.20496 0.97203 0.98170 0.97027 1.21382 0.96908 0.92031 1.03532 0.92731 0.90461 0.90390 0.90591 0.89739 0.91738 0.92006 0.96400 0.96212 0.78340 0.93605 0.89929 0.89670 0.87532 0.87914 0.90894 0.90728 0.90866 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 9.96 59.85 0.60 1.15 16 2 N -0.62 -7.57 2.87 -181.56 -0.52 -8.09 16 3 C 0.12 1.65 5.42 -4.04 -0.02 1.63 16 4 C -0.14 -2.39 5.65 -26.73 -0.15 -2.54 16 5 C 0.16 3.31 6.26 -4.04 -0.03 3.29 16 6 N -0.73 -19.63 5.60 -59.91 -0.34 -19.96 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 10 N -0.93 -29.11 13.06 55.49 0.72 -28.39 16 11 Si 0.91 22.98 29.55 -169.99 -5.02 17.96 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 C 0.52 7.05 6.93 -10.99 -0.08 6.97 16 16 O -0.53 -9.53 15.53 5.56 0.09 -9.44 16 17 C -0.10 -1.05 1.74 -91.71 -0.16 -1.21 16 18 H 0.09 0.78 7.76 -51.93 -0.40 0.38 16 19 C -0.09 -0.82 5.14 -28.18 -0.14 -0.97 16 20 C -0.15 -1.25 9.80 -35.90 -0.35 -1.61 16 21 C -0.16 -1.24 9.80 -35.90 -0.35 -1.59 16 22 C -0.09 -0.71 6.11 -28.18 -0.17 -0.89 16 23 C -0.10 -1.03 4.62 -26.66 -0.12 -1.15 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 26 H 0.08 0.55 4.17 -51.93 -0.22 0.33 16 27 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 28 H 0.08 1.32 7.35 -51.93 -0.38 0.94 16 29 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.74 7.67 -40.82 -0.31 10.43 16 34 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.09 0.67 5.34 -51.93 -0.28 0.40 16 37 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.10 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 42 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -34.13 336.73 -8.26 -42.39 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.04 Total: 5.04 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.23 Total: -4.58 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.13 Total: -56.44 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.09 Total: -9.44 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.13 -8.26 -42.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569181241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.662 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds