Wall clock time and date at job start Mon Mar 30 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99663 * 2 1 4 4 C 1.53000 * 109.46850 * 270.00118 * 3 2 1 5 5 C 1.53005 * 109.46820 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.47148 * 180.02562 * 5 4 3 7 7 C 1.36933 * 120.00143 * 180.02562 * 6 5 4 8 8 H 1.08002 * 119.99993 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99980 * 180.02562 * 7 6 5 10 10 N 1.31622 * 120.00030 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46963 * 359.97438 * 11 9 7 13 13 H 1.48510 * 109.47036 * 119.99586 * 11 9 7 14 14 H 1.48504 * 109.47062 * 239.99063 * 11 9 7 15 15 C 1.34770 * 119.99927 * 180.02562 * 2 1 3 16 16 O 1.21281 * 120.00043 * 185.55158 * 15 2 1 17 17 C 1.50704 * 119.99846 * 5.55171 * 15 2 1 18 18 H 1.09002 * 109.81242 * 307.32669 * 17 15 2 19 19 C 1.53022 * 109.64609 * 67.86306 * 17 15 2 20 20 C 1.50062 * 110.03924 * 169.05101 * 19 17 15 21 21 C 1.29445 * 124.07356 * 342.95560 * 20 19 17 22 22 C 1.50063 * 124.07865 * 0.45198 * 21 20 19 23 23 C 1.53028 * 110.14683 * 342.86557 * 22 21 20 24 24 H 1.09007 * 109.46985 * 263.93198 * 1 2 3 25 25 H 1.09000 * 109.47242 * 23.92531 * 1 2 3 26 26 H 1.09001 * 109.47115 * 143.93205 * 1 2 3 27 27 H 1.09000 * 109.47297 * 30.00358 * 3 2 1 28 28 H 1.09003 * 109.46619 * 150.00183 * 3 2 1 29 29 H 1.09009 * 109.47140 * 300.00122 * 4 3 2 30 30 H 1.08997 * 109.47510 * 60.00140 * 4 3 2 31 31 H 1.09000 * 109.46698 * 299.99855 * 5 4 3 32 32 H 1.08997 * 109.47578 * 59.99430 * 5 4 3 33 33 H 0.97001 * 119.99410 * 359.97438 * 6 5 4 34 34 H 0.97002 * 120.00152 * 180.02562 * 10 9 7 35 35 H 1.09006 * 109.35829 * 48.90824 * 19 17 15 36 36 H 1.09002 * 109.35512 * 289.19007 * 19 17 15 37 37 H 1.07999 * 117.96278 * 162.93575 * 20 19 17 38 38 H 1.08006 * 117.95966 * 180.42560 * 21 20 19 39 39 H 1.08997 * 109.35765 * 103.07078 * 22 21 20 40 40 H 1.08995 * 109.35665 * 222.66154 * 22 21 20 41 41 H 1.08996 * 109.64574 * 169.12003 * 23 22 21 42 42 H 1.08997 * 109.64181 * 289.54423 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0352 -1.4425 6 7 3.4615 3.4585 -2.8238 7 6 4.1354 4.6239 -3.0740 8 1 4.4870 5.2314 -2.2531 9 6 4.3657 5.0252 -4.3827 10 7 3.9368 4.2852 -5.3831 11 14 5.2844 6.6155 -4.7241 12 1 5.6565 7.2580 -3.4380 13 1 6.5131 6.3197 -5.5040 14 1 4.4134 7.5331 -5.5017 15 6 2.1389 -1.1672 -0.0005 16 8 3.3474 -1.1697 0.1011 17 6 1.3906 -2.4691 -0.1274 18 1 0.6016 -2.5165 0.6232 19 6 0.7778 -2.5763 -1.5254 20 6 0.2628 -3.9667 -1.7560 21 6 0.6022 -4.9931 -1.0440 22 6 1.5505 -4.9343 0.1175 23 6 2.3606 -3.6369 0.0713 24 1 -0.3633 -0.1086 1.0220 25 1 -0.3634 0.9394 -0.4168 26 1 -0.3633 -0.8307 -0.6050 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5138 29 1 3.0415 0.9507 -1.9564 30 1 1.5000 1.8407 -1.9564 31 1 2.6291 3.7950 -0.9285 32 1 4.1703 2.9046 -0.9288 33 1 3.1460 2.9127 -3.5610 34 1 4.0980 4.5654 -6.2977 35 1 1.5376 -2.3440 -2.2717 36 1 -0.0449 -1.8668 -1.6146 37 1 -0.4346 -4.1206 -2.5661 38 1 0.1759 -5.9515 -1.3017 39 1 0.9847 -4.9740 1.0483 40 1 2.2294 -5.7859 0.0731 41 1 2.9017 -3.5092 1.0088 42 1 3.0676 -3.6757 -0.7574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569181241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:06 Heat of formation + Delta-G solvation = -40.364091 kcal Electronic energy + Delta-G solvation = -20178.681330 eV Core-core repulsion = 17157.945994 eV Total energy + Delta-G solvation = -3020.735336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45769 -38.77485 -37.50218 -36.43911 -34.16602 -32.52568 -31.80218 -31.12306 -27.95372 -27.03783 -25.15926 -24.30442 -23.33835 -22.40935 -20.15895 -19.17997 -18.89880 -18.10269 -17.45393 -16.80853 -16.40231 -16.25805 -15.97554 -15.30663 -15.25341 -14.92439 -14.69068 -14.24623 -14.12744 -13.80681 -13.52883 -13.45148 -13.26558 -13.20657 -12.88198 -12.79364 -12.63481 -12.41283 -12.05539 -11.97562 -11.85129 -11.80998 -11.66196 -11.31141 -10.98155 -10.65894 -9.86853 -9.64925 -9.05280 -7.98433 -5.28717 1.41687 1.45523 1.47402 1.57288 1.58178 2.03270 2.54243 3.35072 3.42858 3.69773 3.79878 3.87001 3.97670 4.14909 4.21593 4.28073 4.29384 4.40351 4.46170 4.51465 4.57888 4.60528 4.62457 4.72680 4.75970 4.85836 4.87930 4.95415 5.05003 5.15560 5.25711 5.26451 5.27946 5.33499 5.45982 5.56070 5.77901 6.06593 6.23725 6.39830 7.15922 7.29202 8.03798 8.27718 9.25630 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.031649 B = 0.003300 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.489120 B = 8482.559953 C = 8740.064483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.613 5.613 3 C 0.124 3.876 4 C -0.120 4.120 5 C 0.155 3.845 6 N -0.749 5.749 7 C -0.249 4.249 8 H 0.077 0.923 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.979 3.021 12 H -0.265 1.265 13 H -0.293 1.293 14 H -0.289 1.289 15 C 0.507 3.493 16 O -0.587 6.587 17 C -0.096 4.096 18 H 0.123 0.877 19 C -0.086 4.086 20 C -0.162 4.162 21 C -0.155 4.155 22 C -0.088 4.088 23 C -0.102 4.102 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.012 0.988 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 -18.110 13.823 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.345 5.345 3 C 0.001 3.999 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.381 4.381 8 H 0.095 0.905 9 C -0.270 4.270 10 N -0.622 5.622 11 Si 0.807 3.193 12 H -0.189 1.189 13 H -0.220 1.220 14 H -0.216 1.216 15 C 0.296 3.704 16 O -0.467 6.467 17 C -0.117 4.117 18 H 0.141 0.859 19 C -0.123 4.123 20 C -0.180 4.180 21 C -0.173 4.173 22 C -0.125 4.125 23 C -0.140 4.140 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.204 0.796 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.940 -17.942 13.967 26.162 hybrid contribution 0.764 0.770 -0.984 1.465 sum -12.175 -17.172 12.983 24.732 Atomic orbital electron populations 1.22382 0.76915 1.05159 1.03785 1.47990 1.08651 1.05216 1.72644 1.21314 0.97880 0.85321 0.95399 1.21856 1.00105 0.96019 0.97910 1.20703 0.96400 0.94104 0.86022 1.42613 1.68197 1.25458 1.02930 1.19719 1.27324 0.98824 0.92238 0.90483 1.25659 1.03190 1.02753 0.95404 1.69839 1.53201 1.40830 0.98315 0.85000 0.77469 0.78893 0.77940 1.18901 1.22019 1.21565 1.21362 0.87544 0.86645 0.74813 1.90683 1.16672 1.88039 1.51314 1.21343 0.99169 0.90580 1.00623 0.85885 1.20576 1.00511 0.97193 0.94014 1.22049 1.01403 0.93576 1.01000 1.22276 0.98740 0.99006 0.97309 1.20507 0.97225 0.96729 0.98052 1.21361 0.96953 0.93815 1.01892 0.90267 0.89717 0.88887 0.87566 0.91713 0.94662 0.91195 0.94736 0.96975 0.79632 0.93893 0.92704 0.88014 0.86203 0.86098 0.89049 0.89921 0.91867 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.80 9.96 127.77 1.27 2.07 16 2 N -0.61 -14.37 2.87 -846.73 -2.43 -16.80 16 3 C 0.12 3.42 5.42 86.38 0.47 3.89 16 4 C -0.12 -4.18 5.65 30.60 0.17 -4.01 16 5 C 0.15 6.57 6.26 86.38 0.54 7.11 16 6 N -0.75 -40.67 5.60 -343.44 -1.92 -42.60 16 7 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 8 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 9 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 10 N -0.97 -61.40 13.06 21.65 0.28 -61.12 16 11 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 C 0.51 13.89 6.93 87.66 0.61 14.50 16 16 O -0.59 -22.01 15.53 -3.03 -0.05 -22.05 16 17 C -0.10 -1.84 1.74 -11.50 -0.02 -1.86 16 18 H 0.12 1.66 7.76 -2.39 -0.02 1.65 16 19 C -0.09 -1.51 5.14 29.66 0.15 -1.36 16 20 C -0.16 -2.37 9.80 27.03 0.27 -2.10 16 21 C -0.16 -2.07 9.80 27.03 0.27 -1.81 16 22 C -0.09 -1.21 6.11 29.66 0.18 -1.02 16 23 C -0.10 -2.08 4.62 30.64 0.14 -1.94 16 24 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.08 1.08 8.03 -2.39 -0.02 1.06 16 26 H 0.09 1.00 4.17 -2.39 -0.01 0.99 16 27 H 0.11 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.06 2.06 7.35 -2.39 -0.02 2.05 16 29 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.37 21.44 7.67 -92.71 -0.71 20.73 16 34 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.05 1.27 8.10 -2.38 -0.02 1.25 16 36 H 0.10 1.39 5.34 -2.39 -0.01 1.38 16 37 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.12 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.39 8.01 -2.39 -0.02 1.37 16 42 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 Total: -1.00 -75.43 336.73 3.54 -71.89 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.28 Total: 25.77 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.35 Total: -4.46 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -4.07 Total: -120.51 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.43 3.54 -71.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569181241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.526 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds