Wall clock time and date at job start Mon Mar 30 2020 00:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47110 * 2 1 4 4 C 1.47958 * 111.00219 * 207.02218 * 3 2 1 5 5 C 1.53935 * 86.17919 * 137.58689 * 4 3 2 6 6 C 1.47955 * 111.00113 * 306.38553 * 3 2 1 7 7 H 1.08999 * 113.86100 * 108.08171 * 6 3 2 8 8 C 1.50698 * 113.75845 * 336.72783 * 6 3 2 9 9 O 1.21284 * 120.00304 * 327.69363 * 8 6 3 10 10 N 1.34778 * 119.99955 * 147.69151 * 8 6 3 11 11 C 1.46931 * 120.63062 * 180.02562 * 10 8 6 12 12 C 1.53187 * 108.77292 * 233.58446 * 11 10 8 13 13 C 1.53035 * 109.31440 * 305.36474 * 12 11 10 14 14 C 1.50700 * 109.46262 * 181.38614 * 13 12 11 15 15 H 1.08001 * 119.99923 * 327.81608 * 14 13 12 16 16 C 1.37883 * 120.00286 * 147.81218 * 14 13 12 17 17 N 1.31510 * 119.99628 * 6.30194 * 16 14 13 18 18 Si 1.86804 * 120.00042 * 186.29662 * 16 14 13 19 19 H 1.48500 * 109.46722 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47237 * 300.00275 * 18 16 14 21 21 H 1.48500 * 109.46977 * 60.00173 * 18 16 14 22 22 C 1.53040 * 109.52926 * 61.37376 * 13 12 11 23 23 C 1.46928 * 120.63242 * 359.97438 * 10 8 6 24 24 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47129 * 299.99606 * 1 2 3 26 26 H 1.08998 * 109.47506 * 60.00075 * 1 2 3 27 27 H 1.08998 * 109.47129 * 240.00394 * 2 1 3 28 28 H 1.08997 * 109.47742 * 120.00418 * 2 1 3 29 29 H 1.08993 * 113.76098 * 23.26418 * 4 3 2 30 30 H 1.09005 * 113.85921 * 251.91263 * 4 3 2 31 31 H 1.09001 * 113.73211 * 221.92002 * 5 4 3 32 32 H 1.08994 * 113.83307 * 90.65310 * 5 4 3 33 33 H 1.09001 * 109.58463 * 113.79659 * 11 10 8 34 34 H 1.09002 * 109.70117 * 353.44253 * 11 10 8 35 35 H 1.09002 * 109.49962 * 185.41561 * 12 11 10 36 36 H 1.08999 * 109.52789 * 65.33272 * 12 11 10 37 37 H 1.08997 * 109.46380 * 301.35635 * 13 12 11 38 38 H 0.96997 * 120.00430 * 357.60013 * 17 16 14 39 39 H 1.08999 * 109.49903 * 58.58193 * 22 13 12 40 40 H 1.09000 * 109.49744 * 178.67968 * 22 13 12 41 41 H 1.09003 * 109.58505 * 246.20214 * 23 10 8 42 42 H 1.08997 * 109.58321 * 6.48068 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3565 1.4748 -0.6276 5 6 2.8316 2.7443 -1.3223 6 6 1.4238 2.1581 -1.1120 7 1 0.6853 2.8931 -0.7920 8 6 0.9447 1.3036 -2.2571 9 8 1.5231 0.2725 -2.5279 10 7 -0.1266 1.6852 -2.9804 11 6 -0.6059 0.8625 -4.0995 12 6 -0.6957 1.7389 -5.3527 13 6 -1.5658 2.9618 -5.0538 14 6 -1.6843 3.8090 -6.2945 15 1 -0.8657 3.8543 -6.9977 16 6 -2.8377 4.5262 -6.5321 17 7 -3.7838 4.5708 -5.6198 18 14 -3.0562 5.4346 -8.1497 19 1 -4.3717 6.1236 -8.1566 20 1 -1.9719 6.4373 -8.3048 21 1 -2.9986 4.4654 -9.2734 22 6 -0.9245 3.7846 -3.9341 23 6 -0.8381 2.9313 -2.6643 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.5752 0.6570 -1.3141 30 1 4.1639 1.6634 0.0800 31 1 3.1220 2.8230 -2.3699 32 1 3.0136 3.6607 -0.7610 33 1 -1.5915 0.4618 -3.8624 34 1 0.0893 0.0418 -4.2764 35 1 -1.1406 1.1659 -6.1662 36 1 0.3034 2.0651 -5.6415 37 1 -2.5575 2.6345 -4.7417 38 1 -3.6856 4.0710 -4.7943 39 1 0.0770 4.0914 -4.2357 40 1 -1.5324 4.6678 -3.7377 41 1 -1.8425 2.6988 -2.3105 42 1 -0.2954 3.4758 -1.8916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611467800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:50 Heat of formation + Delta-G solvation = 2.501745 kcal Electronic energy + Delta-G solvation = -21673.124301 eV Core-core repulsion = 18654.247768 eV Total energy + Delta-G solvation = -3018.876534 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40213 -38.57044 -36.66147 -33.85303 -32.67114 -31.38979 -30.45374 -27.73937 -26.65648 -25.54102 -23.11338 -22.67928 -22.09361 -21.19056 -19.66622 -18.19308 -17.54513 -16.63486 -16.05427 -15.86917 -15.43342 -14.81289 -14.18498 -13.82665 -13.79829 -13.71268 -13.29334 -12.74295 -12.64861 -12.52196 -12.41738 -12.03749 -11.84664 -11.40965 -11.31270 -11.06586 -10.91729 -10.84908 -10.78281 -10.69172 -10.55836 -10.18391 -10.15103 -9.75387 -9.31461 -8.78440 -8.52487 -8.35981 -8.07430 -6.42631 -4.12529 2.59485 3.20257 3.40203 3.41393 3.60124 3.90170 4.40006 4.47749 4.51882 4.84988 4.99708 5.14734 5.22289 5.28782 5.33438 5.45476 5.51894 5.64604 5.66561 5.69900 5.71378 5.82769 5.91407 5.94149 5.98180 6.00087 6.02833 6.15811 6.24179 6.33569 6.36105 6.69780 6.76238 6.82983 6.88910 6.91324 7.35453 7.50523 7.67705 8.16589 8.31406 8.37995 8.81914 9.59128 10.96898 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037081 B = 0.004694 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.912467 B = 5963.470437 C = 6082.007339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.009 4.009 3 N -0.455 5.455 4 C 0.001 3.999 5 C -0.126 4.126 6 C -0.001 4.001 7 H 0.117 0.883 8 C 0.515 3.485 9 O -0.552 6.552 10 N -0.594 5.594 11 C 0.109 3.891 12 C -0.116 4.116 13 C 0.030 3.970 14 C -0.594 4.594 15 H 0.047 0.953 16 C 0.022 3.978 17 N -0.911 5.911 18 Si 1.065 2.935 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.120 4.120 23 C 0.098 3.902 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.269 0.731 39 H 0.050 0.950 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.239 -4.909 9.775 14.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.137 4.137 3 N -0.178 5.178 4 C -0.128 4.128 5 C -0.164 4.164 6 C -0.114 4.114 7 H 0.135 0.865 8 C 0.303 3.697 9 O -0.432 6.432 10 N -0.326 5.326 11 C -0.013 4.013 12 C -0.155 4.155 13 C 0.011 3.989 14 C -0.632 4.632 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.547 5.547 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.159 4.159 23 C -0.025 4.025 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.369 -4.266 9.477 13.344 hybrid contribution 0.956 -1.280 0.100 1.601 sum 9.326 -5.546 9.577 14.472 Atomic orbital electron populations 1.21922 0.95316 1.01955 1.01994 1.23005 0.96186 0.91309 1.03229 1.68937 1.03315 1.12094 1.33439 1.24002 0.93376 0.97913 0.97520 1.23203 0.92734 0.98612 1.01860 1.23479 0.99456 0.97409 0.91022 0.86507 1.20447 0.80075 0.85998 0.83141 1.90547 1.57352 1.25788 1.69542 1.48206 1.29074 1.23791 1.31520 1.21773 0.98870 0.94032 0.86657 1.21960 1.00770 0.97903 0.94834 1.18854 0.94154 0.91674 0.94205 1.21899 1.03409 1.31079 1.06835 0.93429 1.25806 0.92707 0.96587 1.03183 1.70832 1.36007 1.39472 1.08418 0.83586 0.76174 0.76143 0.74712 1.20812 1.21502 1.21452 1.22148 1.01155 0.98681 0.93908 1.22124 0.96246 0.84654 0.99444 0.92241 0.92349 0.92375 0.89474 0.91061 0.89901 0.89470 0.90592 0.88276 0.92161 0.90199 0.91743 0.93105 0.94674 0.91935 0.93095 0.91467 0.91751 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.41 37.15 0.35 -1.70 16 2 C -0.01 -0.13 5.49 -3.83 -0.02 -0.15 16 3 N -0.45 -6.02 6.39 -232.11 -1.48 -7.51 16 4 C 0.00 0.01 7.61 -2.77 -0.02 -0.01 16 5 C -0.13 -1.49 7.87 -25.80 -0.20 -1.69 16 6 C 0.00 -0.02 3.41 -67.81 -0.23 -0.25 16 7 H 0.12 1.50 5.77 -51.93 -0.30 1.20 16 8 C 0.52 8.34 4.05 -10.99 -0.04 8.30 16 9 O -0.55 -10.02 12.02 5.55 0.07 -9.95 16 10 N -0.59 -9.98 2.69 -172.74 -0.47 -10.44 16 11 C 0.11 1.93 6.43 -3.71 -0.02 1.90 16 12 C -0.12 -2.35 5.34 -26.62 -0.14 -2.49 16 13 C 0.03 0.69 1.82 -91.73 -0.17 0.52 16 14 C -0.59 -15.75 8.30 -34.44 -0.29 -16.04 16 15 H 0.05 1.28 7.82 -52.49 -0.41 0.87 16 16 C 0.02 0.59 5.45 -17.82 -0.10 0.49 16 17 N -0.91 -26.09 13.62 55.43 0.75 -25.34 16 18 Si 1.07 24.30 29.91 -169.99 -5.08 19.22 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 22 C -0.12 -2.43 5.34 -26.59 -0.14 -2.57 16 23 C 0.10 1.59 6.31 -3.69 -0.02 1.57 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.86 4.82 -51.93 -0.25 0.61 16 27 H 0.09 1.35 4.82 -51.93 -0.25 1.10 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.10 6.74 -51.93 -0.35 0.75 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.87 6.63 -51.93 -0.34 0.53 16 38 H 0.27 7.57 6.66 -40.82 -0.27 7.30 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.03 5.28 -51.93 -0.27 0.75 16 LS Contribution 315.98 15.07 4.76 4.76 Total: -1.00 -29.02 315.98 -9.18 -38.21 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.68 Total: 3.17 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.05 Total: -12.12 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -1.19 Total: -43.29 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.02 -9.18 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611467800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.709 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds