Wall clock time and date at job start Mon Mar 30 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46903 * 109.47110 * 2 1 4 4 C 1.47958 * 111.00219 * 207.02218 * 3 2 1 5 5 C 1.53935 * 86.17919 * 137.58689 * 4 3 2 6 6 C 1.47955 * 111.00113 * 306.38553 * 3 2 1 7 7 H 1.08999 * 113.86100 * 108.08171 * 6 3 2 8 8 C 1.50698 * 113.75845 * 336.72783 * 6 3 2 9 9 O 1.21284 * 120.00304 * 327.69363 * 8 6 3 10 10 N 1.34778 * 119.99955 * 147.69151 * 8 6 3 11 11 C 1.46931 * 120.63062 * 180.02562 * 10 8 6 12 12 C 1.53187 * 108.77292 * 233.58446 * 11 10 8 13 13 C 1.53035 * 109.31440 * 305.36474 * 12 11 10 14 14 C 1.50700 * 109.46262 * 181.38614 * 13 12 11 15 15 H 1.08001 * 119.99923 * 327.81608 * 14 13 12 16 16 C 1.37883 * 120.00286 * 147.81218 * 14 13 12 17 17 N 1.31510 * 119.99628 * 6.30194 * 16 14 13 18 18 Si 1.86804 * 120.00042 * 186.29662 * 16 14 13 19 19 H 1.48500 * 109.46722 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47237 * 300.00275 * 18 16 14 21 21 H 1.48500 * 109.46977 * 60.00173 * 18 16 14 22 22 C 1.53040 * 109.52926 * 61.37376 * 13 12 11 23 23 C 1.46928 * 120.63242 * 359.97438 * 10 8 6 24 24 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47129 * 299.99606 * 1 2 3 26 26 H 1.08998 * 109.47506 * 60.00075 * 1 2 3 27 27 H 1.08998 * 109.47129 * 240.00394 * 2 1 3 28 28 H 1.08997 * 109.47742 * 120.00418 * 2 1 3 29 29 H 1.08993 * 113.76098 * 23.26418 * 4 3 2 30 30 H 1.09005 * 113.85921 * 251.91263 * 4 3 2 31 31 H 1.09001 * 113.73211 * 221.92002 * 5 4 3 32 32 H 1.08994 * 113.83307 * 90.65310 * 5 4 3 33 33 H 1.09001 * 109.58463 * 113.79659 * 11 10 8 34 34 H 1.09002 * 109.70117 * 353.44253 * 11 10 8 35 35 H 1.09002 * 109.49962 * 185.41561 * 12 11 10 36 36 H 1.08999 * 109.52789 * 65.33272 * 12 11 10 37 37 H 1.08997 * 109.46380 * 301.35635 * 13 12 11 38 38 H 0.96997 * 120.00430 * 357.60013 * 17 16 14 39 39 H 1.08999 * 109.49903 * 58.58193 * 22 13 12 40 40 H 1.09000 * 109.49744 * 178.67968 * 22 13 12 41 41 H 1.09003 * 109.58505 * 246.20214 * 23 10 8 42 42 H 1.08997 * 109.58321 * 6.48068 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3565 1.4748 -0.6276 5 6 2.8316 2.7443 -1.3223 6 6 1.4238 2.1581 -1.1120 7 1 0.6853 2.8931 -0.7920 8 6 0.9447 1.3036 -2.2571 9 8 1.5231 0.2725 -2.5279 10 7 -0.1266 1.6852 -2.9804 11 6 -0.6059 0.8625 -4.0995 12 6 -0.6957 1.7389 -5.3527 13 6 -1.5658 2.9618 -5.0538 14 6 -1.6843 3.8090 -6.2945 15 1 -0.8657 3.8543 -6.9977 16 6 -2.8377 4.5262 -6.5321 17 7 -3.7838 4.5708 -5.6198 18 14 -3.0562 5.4346 -8.1497 19 1 -4.3717 6.1236 -8.1566 20 1 -1.9719 6.4373 -8.3048 21 1 -2.9986 4.4654 -9.2734 22 6 -0.9245 3.7846 -3.9341 23 6 -0.8381 2.9313 -2.6643 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.5752 0.6570 -1.3141 30 1 4.1639 1.6634 0.0800 31 1 3.1220 2.8230 -2.3699 32 1 3.0136 3.6607 -0.7610 33 1 -1.5915 0.4618 -3.8624 34 1 0.0893 0.0418 -4.2764 35 1 -1.1406 1.1659 -6.1662 36 1 0.3034 2.0651 -5.6415 37 1 -2.5575 2.6345 -4.7417 38 1 -3.6856 4.0710 -4.7943 39 1 0.0770 4.0914 -4.2357 40 1 -1.5324 4.6678 -3.7377 41 1 -1.8425 2.6988 -2.3105 42 1 -0.2954 3.4758 -1.8916 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611467800.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:49 Heat of formation + Delta-G solvation = -16.209128 kcal Electronic energy + Delta-G solvation = -21673.935666 eV Core-core repulsion = 18654.247768 eV Total energy + Delta-G solvation = -3019.687898 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.55766 -39.91911 -38.08495 -35.62515 -33.70596 -33.11492 -32.02256 -28.95387 -27.79230 -27.11271 -24.83802 -24.16377 -23.11042 -22.56511 -21.16344 -19.57136 -18.98266 -18.33808 -17.16840 -17.09049 -16.62854 -15.99064 -15.71140 -15.64199 -15.24614 -15.08193 -14.75035 -14.36234 -14.08890 -13.75388 -13.49668 -13.35483 -13.12562 -12.95462 -12.62025 -12.60646 -12.45069 -12.21400 -12.11981 -11.95646 -11.83778 -11.75804 -11.52853 -11.24286 -11.12603 -10.64750 -10.40560 -9.75098 -9.47197 -8.57626 -6.27660 1.35558 1.55078 1.61023 1.80502 1.89295 2.58482 2.88201 3.21444 3.30532 3.42505 3.80328 3.95692 4.00697 4.06727 4.17143 4.20160 4.24885 4.30729 4.41254 4.43517 4.54692 4.57895 4.71898 4.73584 4.74877 4.80590 4.92025 4.93016 4.96639 5.00489 5.07777 5.10789 5.19405 5.28197 5.39742 5.54733 5.75101 5.87091 6.13941 6.25093 6.36052 6.70440 7.02371 7.50202 8.82745 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037081 B = 0.004694 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.912467 B = 5963.470437 C = 6082.007339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.008 4.008 3 N -0.453 5.453 4 C 0.001 3.999 5 C -0.119 4.119 6 C -0.006 4.006 7 H 0.130 0.870 8 C 0.516 3.484 9 O -0.572 6.572 10 N -0.598 5.598 11 C 0.118 3.882 12 C -0.107 4.107 13 C 0.025 3.975 14 C -0.606 4.606 15 H 0.038 0.962 16 C -0.025 4.025 17 N -0.936 5.936 18 Si 1.107 2.893 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.110 4.110 23 C 0.109 3.891 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.042 0.958 37 H 0.013 0.987 38 H 0.261 0.739 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.068 0.932 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -4.553 10.946 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 N -0.176 5.176 4 C -0.127 4.127 5 C -0.157 4.157 6 C -0.119 4.119 7 H 0.147 0.853 8 C 0.306 3.694 9 O -0.454 6.454 10 N -0.330 5.330 11 C -0.005 4.005 12 C -0.145 4.145 13 C 0.006 3.994 14 C -0.644 4.644 15 H 0.056 0.944 16 C -0.224 4.224 17 N -0.574 5.574 18 Si 0.930 3.070 19 H -0.211 1.211 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.148 4.148 23 C -0.014 4.014 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.479 -3.922 10.661 14.795 hybrid contribution 0.671 -1.454 -0.255 1.621 sum 10.150 -5.376 10.406 15.499 Atomic orbital electron populations 1.21898 0.95163 1.02252 1.01588 1.22958 0.96315 0.91433 1.02846 1.68975 1.03893 1.11765 1.32923 1.24029 0.93511 0.97427 0.97739 1.23276 0.91024 0.99546 1.01840 1.23553 1.00754 0.97415 0.90140 0.85276 1.20938 0.79197 0.85915 0.83353 1.90554 1.57763 1.26844 1.70194 1.48223 1.29556 1.23782 1.31478 1.21569 0.99366 0.93589 0.85982 1.21788 0.99429 0.97165 0.96126 1.18853 0.93865 0.92645 0.94067 1.22258 1.03020 1.31200 1.07946 0.94407 1.27032 0.92620 0.97376 1.05373 1.70931 1.36901 1.40749 1.08814 0.83037 0.76315 0.75775 0.71846 1.21088 1.19931 1.20092 1.21884 0.99919 0.98130 0.94904 1.22020 0.97214 0.84096 0.98025 0.91734 0.91286 0.94013 0.91611 0.89650 0.91597 0.87070 0.91409 0.85686 0.91573 0.90031 0.92327 0.93921 0.96904 0.92834 0.93534 0.93322 0.91343 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.41 71.98 0.68 -3.05 16 2 C -0.01 -0.19 5.49 86.30 0.47 0.28 16 3 N -0.45 -10.78 6.39 -888.25 -5.68 -16.45 16 4 C 0.00 0.03 7.61 86.41 0.66 0.69 16 5 C -0.12 -2.47 7.87 31.24 0.25 -2.23 16 6 C -0.01 -0.16 3.41 44.27 0.15 -0.01 16 7 H 0.13 2.86 5.77 -2.39 -0.01 2.84 16 8 C 0.52 15.95 4.05 87.66 0.35 16.30 16 9 O -0.57 -20.29 12.02 -3.04 -0.04 -20.33 16 10 N -0.60 -19.40 2.69 -818.81 -2.20 -21.61 16 11 C 0.12 4.11 6.43 86.36 0.56 4.67 16 12 C -0.11 -4.34 5.34 30.67 0.16 -4.18 16 13 C 0.02 1.15 1.82 -11.51 -0.02 1.13 16 14 C -0.61 -32.59 8.30 25.60 0.21 -32.37 16 15 H 0.04 2.06 7.82 -2.91 -0.02 2.03 16 16 C -0.03 -1.38 5.45 84.66 0.46 -0.92 16 17 N -0.94 -54.46 13.62 21.45 0.29 -54.17 16 18 Si 1.11 48.91 29.91 68.60 2.05 50.96 16 19 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 22 C -0.11 -4.40 5.34 30.69 0.16 -4.24 16 23 C 0.11 3.39 6.31 86.38 0.54 3.93 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.17 4.82 -2.39 -0.01 1.15 16 27 H 0.07 1.97 4.82 -2.39 -0.01 1.96 16 28 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.07 1.66 6.74 -2.39 -0.02 1.64 16 30 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.85 7.01 -2.39 -0.02 2.83 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.01 0.65 6.63 -2.39 -0.02 0.64 16 38 H 0.26 15.08 6.66 -92.71 -0.62 14.46 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 2.66 5.28 -2.39 -0.01 2.65 16 Total: -1.00 -62.43 315.98 0.21 -62.21 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.15 Total: 19.39 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 4.64 Total: -20.00 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -7.59 Total: -92.23 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.04 Total: -20.33 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.05 Total: 50.96 kcal Total: -62.43 0.21 -62.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611467800.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.002 kcal (2) G-P(sol) polarization free energy of solvation -62.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds