Wall clock time and date at job start Mon Mar 30 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99969 * 2 1 4 4 H 1.07998 * 119.99539 * 156.22826 * 3 2 1 5 5 C 1.38813 * 120.00027 * 336.24022 * 3 2 1 6 6 N 1.31618 * 120.00011 * 330.46158 * 5 3 2 7 7 Si 1.86800 * 120.00201 * 150.46384 * 5 3 2 8 8 H 1.48493 * 109.46953 * 269.99835 * 7 5 3 9 9 H 1.48504 * 109.47044 * 149.99385 * 7 5 3 10 10 H 1.48508 * 109.47133 * 29.99763 * 7 5 3 11 11 C 1.46498 * 120.00084 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47068 * 269.99640 * 11 2 1 13 13 N 1.46507 * 109.47152 * 180.02562 * 12 11 2 14 14 C 1.34772 * 119.99828 * 180.02562 * 13 12 11 15 15 O 1.21275 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99761 * 180.02562 * 14 13 12 17 17 C 1.52296 * 115.91368 * 111.70988 * 16 14 13 18 18 C 1.52067 * 115.93085 * 179.97438 * 16 14 13 19 19 H 1.09003 * 117.25532 * 359.53336 * 18 16 14 20 20 C 1.52710 * 120.52425 * 149.25650 * 18 16 14 21 21 C 1.52881 * 110.15328 * 338.53139 * 20 18 16 22 22 C 1.53298 * 108.58005 * 54.52002 * 21 20 18 23 23 C 1.52079 * 114.63578 * 326.61785 * 16 14 13 24 24 H 1.09000 * 109.47225 * 92.98419 * 1 2 3 25 25 H 1.09002 * 109.46733 * 212.98579 * 1 2 3 26 26 H 1.08997 * 109.47059 * 332.98259 * 1 2 3 27 27 H 0.97001 * 119.99645 * 354.58803 * 6 5 3 28 28 H 1.09001 * 109.46870 * 30.00244 * 11 2 1 29 29 H 1.09006 * 109.46914 * 149.99893 * 11 2 1 30 30 H 1.08993 * 109.47525 * 299.99951 * 12 11 2 31 31 H 1.09006 * 109.47046 * 60.00334 * 12 11 2 32 32 H 0.97003 * 119.99773 * 0.02562 * 13 12 11 33 33 H 1.09004 * 117.53989 * 213.89747 * 17 16 14 34 34 H 1.08999 * 117.54386 * 359.15145 * 17 16 14 35 35 H 1.09001 * 109.35509 * 98.73561 * 20 18 16 36 36 H 1.08999 * 109.36195 * 218.46120 * 20 18 16 37 37 H 1.08995 * 109.61939 * 174.24887 * 21 20 18 38 38 H 1.08995 * 109.61975 * 294.79298 * 21 20 18 39 39 H 1.09000 * 109.62238 * 45.28504 * 22 21 20 40 40 H 1.08998 * 109.61800 * 165.64722 * 22 21 20 41 41 H 1.09005 * 109.26683 * 314.64082 * 23 16 14 42 42 H 1.08990 * 109.26783 * 74.10640 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2255 0.3770 5 6 1.5439 2.3371 -0.4844 6 7 0.6303 2.2528 -1.4281 7 14 2.0252 4.0060 0.2032 8 1 1.1553 4.3338 1.3611 9 1 1.8602 5.0411 -0.8489 10 1 3.4430 3.9697 0.6437 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1857 -2.9794 1.4411 14 6 3.5223 -3.5636 2.6081 15 8 3.2180 -3.0397 3.6586 16 6 4.2769 -4.8682 2.6075 17 6 5.7115 -4.8075 3.1152 18 6 4.6095 -5.4446 3.9748 19 1 4.2890 -4.8758 4.8477 20 6 4.7063 -6.9551 4.1771 21 6 3.9387 -7.6845 3.0743 22 6 4.4602 -7.2027 1.7156 23 6 3.9367 -5.7968 1.4522 24 1 -0.3634 -0.0535 -1.0263 25 1 -0.3633 -0.8620 0.5595 26 1 -0.3633 0.9155 0.4668 27 1 0.4365 1.3964 -1.8403 28 1 1.6084 -2.0281 -0.5148 29 1 3.1500 -1.1381 -0.5144 30 1 3.0416 -0.9516 1.9558 31 1 1.5001 -1.8416 1.9555 32 1 3.4287 -3.3987 0.6009 33 1 6.4386 -5.4747 2.6523 34 1 6.0951 -3.8360 3.4269 35 1 5.7533 -7.2570 4.1488 36 1 4.2804 -7.2181 5.1454 37 1 4.0973 -8.7588 3.1671 38 1 2.8754 -7.4602 3.1586 39 1 5.5498 -7.1791 1.7291 40 1 4.1185 -7.8787 0.9318 41 1 2.8543 -5.8368 1.3296 42 1 4.3877 -5.4128 0.5373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663271731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:08 Heat of formation + Delta-G solvation = -11.364397 kcal Electronic energy + Delta-G solvation = -20412.010641 eV Core-core repulsion = 17392.532827 eV Total energy + Delta-G solvation = -3019.477815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.73678 -38.23458 -36.25189 -34.39009 -33.27071 -31.62878 -30.91354 -28.21029 -25.96574 -25.09288 -24.14616 -22.62980 -21.62099 -20.68374 -20.40205 -18.50724 -17.58219 -17.21380 -15.77518 -15.32266 -14.91445 -14.57310 -14.24842 -14.20908 -14.04092 -13.81184 -13.57253 -13.39123 -12.88246 -12.70482 -12.41651 -12.24109 -12.09423 -11.25284 -11.24468 -11.12213 -11.01952 -10.78861 -10.75848 -10.64353 -10.47451 -10.14615 -10.03514 -9.90604 -9.56763 -9.49176 -8.73882 -8.35670 -7.00427 -6.10734 -3.24315 2.64395 3.31308 3.52804 3.54320 3.65680 3.70862 4.34491 4.42120 4.53258 4.59396 4.69114 4.80822 4.97325 5.01242 5.21340 5.26790 5.27945 5.37066 5.51475 5.53777 5.58459 5.63549 5.73408 5.78632 5.83284 5.86129 5.88847 5.97579 6.04370 6.15896 6.17304 6.43959 6.57564 6.59196 6.77274 6.93434 7.07496 7.73682 7.96922 8.43481 8.54491 9.07285 9.81995 10.19251 11.17278 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.003569 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.399290 B = 7844.223378 C = 8173.386525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.600 5.600 3 C -0.365 4.365 4 H 0.059 0.941 5 C -0.018 4.018 6 N -0.909 5.909 7 Si 1.064 2.936 8 H -0.292 1.292 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.145 3.855 12 C 0.097 3.903 13 N -0.719 5.719 14 C 0.540 3.460 15 O -0.544 6.544 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.116 4.116 19 H 0.116 0.884 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.084 4.084 24 H 0.012 0.988 25 H 0.015 0.985 26 H 0.053 0.947 27 H 0.270 0.730 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -20.470 6.003 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.323 5.323 3 C -0.493 4.493 4 H 0.077 0.923 5 C -0.221 4.221 6 N -0.549 5.549 7 Si 0.893 3.107 8 H -0.219 1.219 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.370 5.370 14 C 0.325 3.675 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.194 4.194 18 C -0.134 4.134 19 H 0.134 0.866 20 C -0.126 4.126 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.121 4.121 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.751 -18.388 6.665 21.039 hybrid contribution 0.454 -1.688 -0.355 1.784 sum 8.205 -20.077 6.311 22.588 Atomic orbital electron populations 1.21001 0.83677 0.98807 0.97674 1.43820 1.01088 1.01082 1.86331 1.19962 1.01006 0.86961 1.41377 0.92289 1.25792 0.98734 1.02051 0.95538 1.70765 1.35794 1.28311 1.19984 0.83549 0.75363 0.75774 0.75974 1.21942 1.21639 1.21786 1.20827 0.96707 0.88858 0.91976 1.22326 0.95629 0.83193 1.01744 1.46017 1.57984 1.24970 1.08023 1.19619 0.78969 0.84926 0.83941 1.90683 1.54854 1.65113 1.31511 1.21082 0.99550 0.95989 0.97949 1.23200 0.89794 1.03215 1.03233 1.22257 1.01582 0.95956 0.93636 0.86641 1.21084 1.00566 0.91857 0.99071 1.21580 1.00418 0.99295 0.94567 1.21484 1.00897 0.95761 0.97524 1.20736 1.01725 0.93999 0.95665 0.96972 0.96605 0.92837 0.91892 0.94361 0.92814 0.91512 0.92351 0.76978 0.87898 0.88446 0.91384 0.91328 0.91747 0.91534 0.91736 0.91344 0.91006 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.22 8.98 59.85 0.54 3.75 16 2 N -0.60 -15.12 2.80 -181.12 -0.51 -15.63 16 3 C -0.36 -10.27 9.46 -15.06 -0.14 -10.41 16 4 H 0.06 1.68 7.98 -52.49 -0.42 1.26 16 5 C -0.02 -0.52 4.61 -17.43 -0.08 -0.60 16 6 N -0.91 -27.35 12.74 55.49 0.71 -26.64 16 7 Si 1.06 25.65 30.01 -169.99 -5.10 20.54 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.14 2.92 5.80 -4.05 -0.02 2.90 16 12 C 0.10 1.84 6.00 -4.04 -0.02 1.82 16 13 N -0.72 -10.96 5.45 -60.29 -0.33 -11.29 16 14 C 0.54 8.58 7.28 -10.98 -0.08 8.50 16 15 O -0.54 -10.94 16.07 5.56 0.09 -10.85 16 16 C -0.14 -1.65 2.49 -156.96 -0.39 -2.04 16 17 C -0.16 -1.62 9.27 -26.78 -0.25 -1.87 16 18 C -0.12 -1.26 5.65 -90.93 -0.51 -1.77 16 19 H 0.12 1.49 7.50 -51.93 -0.39 1.10 16 20 C -0.09 -0.72 5.83 -26.94 -0.16 -0.88 16 21 C -0.12 -0.91 5.93 -26.64 -0.16 -1.07 16 22 C -0.12 -0.87 5.67 -26.93 -0.15 -1.02 16 23 C -0.08 -0.75 4.69 -27.55 -0.13 -0.88 16 24 H 0.01 0.30 6.87 -51.93 -0.36 -0.06 16 25 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 26 H 0.05 1.39 7.27 -51.93 -0.38 1.01 16 27 H 0.27 8.13 6.37 -40.82 -0.26 7.87 16 28 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.40 4.85 7.45 -40.82 -0.30 4.55 16 33 H 0.10 0.84 7.26 -51.93 -0.38 0.47 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 39 H 0.06 0.44 7.11 -51.93 -0.37 0.07 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 LS Contribution 332.97 15.07 5.02 5.02 Total: -1.00 -32.72 332.97 -8.79 -41.51 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.11 Total: 0.90 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -1.56 Total: -3.57 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.13 Total: -53.56 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.10 Total: 20.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.72 -8.79 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663271731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.149 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds