Wall clock time and date at job start Mon Mar 30 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99969 * 2 1 4 4 H 1.07998 * 119.99539 * 156.22826 * 3 2 1 5 5 C 1.38813 * 120.00027 * 336.24022 * 3 2 1 6 6 N 1.31618 * 120.00011 * 330.46158 * 5 3 2 7 7 Si 1.86800 * 120.00201 * 150.46384 * 5 3 2 8 8 H 1.48493 * 109.46953 * 269.99835 * 7 5 3 9 9 H 1.48504 * 109.47044 * 149.99385 * 7 5 3 10 10 H 1.48508 * 109.47133 * 29.99763 * 7 5 3 11 11 C 1.46498 * 120.00084 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47068 * 269.99640 * 11 2 1 13 13 N 1.46507 * 109.47152 * 180.02562 * 12 11 2 14 14 C 1.34772 * 119.99828 * 180.02562 * 13 12 11 15 15 O 1.21275 * 120.00485 * 0.02562 * 14 13 12 16 16 C 1.50706 * 119.99761 * 180.02562 * 14 13 12 17 17 C 1.52296 * 115.91368 * 111.70988 * 16 14 13 18 18 C 1.52067 * 115.93085 * 179.97438 * 16 14 13 19 19 H 1.09003 * 117.25532 * 359.53336 * 18 16 14 20 20 C 1.52710 * 120.52425 * 149.25650 * 18 16 14 21 21 C 1.52881 * 110.15328 * 338.53139 * 20 18 16 22 22 C 1.53298 * 108.58005 * 54.52002 * 21 20 18 23 23 C 1.52079 * 114.63578 * 326.61785 * 16 14 13 24 24 H 1.09000 * 109.47225 * 92.98419 * 1 2 3 25 25 H 1.09002 * 109.46733 * 212.98579 * 1 2 3 26 26 H 1.08997 * 109.47059 * 332.98259 * 1 2 3 27 27 H 0.97001 * 119.99645 * 354.58803 * 6 5 3 28 28 H 1.09001 * 109.46870 * 30.00244 * 11 2 1 29 29 H 1.09006 * 109.46914 * 149.99893 * 11 2 1 30 30 H 1.08993 * 109.47525 * 299.99951 * 12 11 2 31 31 H 1.09006 * 109.47046 * 60.00334 * 12 11 2 32 32 H 0.97003 * 119.99773 * 0.02562 * 13 12 11 33 33 H 1.09004 * 117.53989 * 213.89747 * 17 16 14 34 34 H 1.08999 * 117.54386 * 359.15145 * 17 16 14 35 35 H 1.09001 * 109.35509 * 98.73561 * 20 18 16 36 36 H 1.08999 * 109.36195 * 218.46120 * 20 18 16 37 37 H 1.08995 * 109.61939 * 174.24887 * 21 20 18 38 38 H 1.08995 * 109.61975 * 294.79298 * 21 20 18 39 39 H 1.09000 * 109.62238 * 45.28504 * 22 21 20 40 40 H 1.08998 * 109.61800 * 165.64722 * 22 21 20 41 41 H 1.09005 * 109.26683 * 314.64082 * 23 16 14 42 42 H 1.08990 * 109.26783 * 74.10640 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1609 1.2255 0.3770 5 6 1.5439 2.3371 -0.4844 6 7 0.6303 2.2528 -1.4281 7 14 2.0252 4.0060 0.2032 8 1 1.1553 4.3338 1.3611 9 1 1.8602 5.0411 -0.8489 10 1 3.4430 3.9697 0.6437 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 7 3.1857 -2.9794 1.4411 14 6 3.5223 -3.5636 2.6081 15 8 3.2180 -3.0397 3.6586 16 6 4.2769 -4.8682 2.6075 17 6 5.7115 -4.8075 3.1152 18 6 4.6095 -5.4446 3.9748 19 1 4.2890 -4.8758 4.8477 20 6 4.7063 -6.9551 4.1771 21 6 3.9387 -7.6845 3.0743 22 6 4.4602 -7.2027 1.7156 23 6 3.9367 -5.7968 1.4522 24 1 -0.3634 -0.0535 -1.0263 25 1 -0.3633 -0.8620 0.5595 26 1 -0.3633 0.9155 0.4668 27 1 0.4365 1.3964 -1.8403 28 1 1.6084 -2.0281 -0.5148 29 1 3.1500 -1.1381 -0.5144 30 1 3.0416 -0.9516 1.9558 31 1 1.5001 -1.8416 1.9555 32 1 3.4287 -3.3987 0.6009 33 1 6.4386 -5.4747 2.6523 34 1 6.0951 -3.8360 3.4269 35 1 5.7533 -7.2570 4.1488 36 1 4.2804 -7.2181 5.1454 37 1 4.0973 -8.7588 3.1671 38 1 2.8754 -7.4602 3.1586 39 1 5.5498 -7.1791 1.7291 40 1 4.1185 -7.8787 0.9318 41 1 2.8543 -5.8368 1.3296 42 1 4.3877 -5.4128 0.5373 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663271731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:08 Heat of formation + Delta-G solvation = -31.709593 kcal Electronic energy + Delta-G solvation = -20412.892875 eV Core-core repulsion = 17392.532827 eV Total energy + Delta-G solvation = -3020.360049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76728 -39.38463 -38.08771 -35.97768 -34.01125 -33.39402 -31.90371 -29.85486 -27.98118 -26.08387 -25.30486 -24.04287 -22.51303 -22.36279 -21.53143 -19.62193 -19.23947 -18.46653 -17.25251 -16.72162 -16.18938 -16.01188 -15.64518 -15.44909 -15.29638 -14.98439 -14.86458 -14.51085 -14.33033 -14.18058 -13.58307 -13.10769 -12.97412 -12.91381 -12.88688 -12.78464 -12.52267 -12.23469 -11.92645 -11.90745 -11.73892 -11.56623 -11.49097 -11.00267 -10.72931 -10.69820 -10.47979 -10.18340 -9.09427 -8.32644 -5.44529 1.42292 1.56951 1.62937 1.81534 2.03764 2.63270 2.73869 3.14462 3.44438 3.58561 3.66569 3.75582 3.84107 4.07170 4.09888 4.14293 4.27107 4.35693 4.49562 4.53157 4.55697 4.59415 4.72042 4.76710 4.81761 4.89712 4.97793 4.99674 5.06988 5.08779 5.11281 5.23242 5.27481 5.31424 5.36358 5.40361 5.51928 5.78244 6.34277 6.48624 6.97494 7.17254 7.70705 8.08154 8.93434 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.038117 B = 0.003569 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.399290 B = 7844.223378 C = 8173.386525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.619 5.619 3 C -0.371 4.371 4 H 0.050 0.950 5 C -0.066 4.066 6 N -0.934 5.934 7 Si 1.110 2.890 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.149 3.851 12 C 0.118 3.882 13 N -0.707 5.707 14 C 0.534 3.466 15 O -0.593 6.593 16 C -0.145 4.145 17 C -0.145 4.145 18 C -0.121 4.121 19 H 0.085 0.915 20 C -0.084 4.084 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.083 4.083 24 H 0.005 0.995 25 H 0.046 0.954 26 H 0.025 0.975 27 H 0.259 0.741 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.414 0.586 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 -22.654 5.647 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 N -0.343 5.343 3 C -0.500 4.500 4 H 0.068 0.932 5 C -0.264 4.264 6 N -0.575 5.575 7 Si 0.935 3.065 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.200 1.200 11 C 0.022 3.978 12 C -0.009 4.009 13 N -0.359 5.359 14 C 0.321 3.679 15 O -0.474 6.474 16 C -0.148 4.148 17 C -0.182 4.182 18 C -0.140 4.140 19 H 0.104 0.896 20 C -0.121 4.121 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.120 4.120 24 H 0.023 0.977 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.251 0.749 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.191 -20.629 6.289 23.444 hybrid contribution 0.020 -1.063 -0.192 1.080 sum 9.211 -21.693 6.098 24.343 Atomic orbital electron populations 1.20870 0.83308 0.98702 0.97373 1.44041 1.01698 1.02011 1.86561 1.20143 1.00928 0.88507 1.40425 0.93174 1.27051 0.98630 1.05334 0.95394 1.70879 1.37402 1.27679 1.21508 0.82915 0.76055 0.72102 0.75394 1.21292 1.21612 1.20022 1.20913 0.96727 0.87587 0.92586 1.21781 0.94755 0.84127 1.00257 1.45811 1.57342 1.23613 1.09086 1.20470 0.78324 0.86048 0.83011 1.90659 1.56794 1.66751 1.33226 1.21092 0.99900 0.94146 0.99683 1.23298 0.89521 1.02999 1.02366 1.22305 1.01719 0.97732 0.92233 0.89629 1.21112 1.01941 0.89499 0.99570 1.21597 0.99403 1.00357 0.94520 1.21495 1.01570 0.94487 0.97681 1.20805 1.01606 0.94696 0.94901 0.97662 0.93528 0.95625 0.93111 0.91552 0.92646 0.94725 0.93786 0.74852 0.84733 0.90106 0.89473 0.91199 0.89809 0.92998 0.90500 0.89784 0.91699 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.88 8.98 127.77 1.15 8.03 16 2 N -0.62 -31.25 2.80 -726.94 -2.03 -33.29 16 3 C -0.37 -21.04 9.46 84.03 0.80 -20.25 16 4 H 0.05 2.88 7.98 -2.91 -0.02 2.86 16 5 C -0.07 -3.80 4.61 84.86 0.39 -3.41 16 6 N -0.93 -56.81 12.74 21.65 0.28 -56.53 16 7 Si 1.11 51.95 30.01 68.60 2.06 54.01 16 8 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 C 0.15 5.89 5.80 86.38 0.50 6.39 16 12 C 0.12 4.50 6.00 86.38 0.52 5.01 16 13 N -0.71 -21.03 5.45 -463.06 -2.52 -23.56 16 14 C 0.53 16.97 7.28 87.66 0.64 17.60 16 15 O -0.59 -24.70 16.07 -3.01 -0.05 -24.75 16 16 C -0.15 -3.17 2.49 -53.77 -0.13 -3.30 16 17 C -0.14 -2.72 9.27 30.56 0.28 -2.43 16 18 C -0.12 -2.53 5.65 -11.00 -0.06 -2.59 16 19 H 0.09 2.30 7.50 -2.39 -0.02 2.29 16 20 C -0.08 -1.16 5.83 30.46 0.18 -0.99 16 21 C -0.12 -1.47 5.93 30.65 0.18 -1.29 16 22 C -0.12 -1.24 5.67 30.47 0.17 -1.07 16 23 C -0.08 -1.26 4.69 30.06 0.14 -1.12 16 24 H 0.01 0.26 6.87 -2.39 -0.02 0.25 16 25 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 26 H 0.02 1.34 7.27 -2.39 -0.02 1.32 16 27 H 0.26 15.86 6.37 -92.71 -0.59 15.27 16 28 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 29 H 0.06 2.18 8.04 -2.38 -0.02 2.16 16 30 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.41 9.34 7.45 -92.71 -0.69 8.65 16 33 H 0.13 1.68 7.26 -2.39 -0.02 1.66 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 0.91 8.06 -2.39 -0.02 0.89 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.05 0.78 8.06 -2.39 -0.02 0.77 16 39 H 0.08 0.68 7.11 -2.39 -0.02 0.66 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.09 1.06 7.81 -2.39 -0.02 1.04 16 Total: -1.00 -72.41 332.97 2.96 -69.45 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.48 Total: 14.07 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.75 Total: 0.60 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -4.28 Total: -113.38 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.05 Total: -24.75 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.06 Total: 54.01 kcal Total: -72.41 2.96 -69.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663271731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.743 kcal (2) G-P(sol) polarization free energy of solvation -72.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds