Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 120.00118 * 2 1 4 4 H 1.07991 * 119.99720 * 159.32293 * 3 2 1 5 5 C 1.38814 * 119.99642 * 339.32330 * 3 2 1 6 6 N 1.31612 * 120.00346 * 347.98727 * 5 3 2 7 7 Si 1.86797 * 119.99458 * 168.26640 * 5 3 2 8 8 H 1.48507 * 109.47140 * 179.72429 * 7 5 3 9 9 H 1.48506 * 109.47185 * 299.71995 * 7 5 3 10 10 H 1.48495 * 109.47531 * 59.72330 * 7 5 3 11 11 C 1.46501 * 119.99881 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46377 * 269.99875 * 11 2 1 13 13 N 1.46501 * 109.46377 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99634 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00025 * 179.97438 * 14 13 12 17 17 C 1.52301 * 115.91499 * 248.29472 * 16 14 13 18 18 C 1.52062 * 115.93066 * 180.02562 * 16 14 13 19 19 H 1.08997 * 117.25641 * 0.46988 * 18 16 14 20 20 C 1.52716 * 120.52296 * 210.74237 * 18 16 14 21 21 C 1.52873 * 110.15094 * 21.47187 * 20 18 16 22 22 C 1.53298 * 108.58101 * 305.47329 * 21 20 18 23 23 C 1.52073 * 114.63596 * 33.38831 * 16 14 13 24 24 H 1.09007 * 109.47040 * 84.89309 * 1 2 3 25 25 H 1.08997 * 109.47171 * 204.89852 * 1 2 3 26 26 H 1.09001 * 109.47147 * 324.90114 * 1 2 3 27 27 H 0.96995 * 120.00285 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47198 * 29.99513 * 11 2 1 29 29 H 1.09001 * 109.47103 * 150.00024 * 11 2 1 30 30 H 1.08996 * 109.47161 * 299.99661 * 12 11 2 31 31 H 1.08993 * 109.47632 * 60.00295 * 12 11 2 32 32 H 0.96997 * 120.00600 * 0.02562 * 13 12 11 33 33 H 1.08998 * 117.53895 * 0.84846 * 17 16 14 34 34 H 1.09000 * 117.53573 * 146.10253 * 17 16 14 35 35 H 1.09002 * 109.35510 * 141.68324 * 20 18 16 36 36 H 1.09001 * 109.35469 * 261.26193 * 20 18 16 37 37 H 1.09001 * 109.62054 * 65.21076 * 21 20 18 38 38 H 1.09011 * 109.61883 * 185.57012 * 21 20 18 39 39 H 1.08999 * 109.61681 * 194.17472 * 22 21 20 40 40 H 1.08994 * 109.62175 * 314.53312 * 22 21 20 41 41 H 1.09005 * 109.26616 * 285.89210 * 23 16 14 42 42 H 1.09003 * 109.27202 * 45.35510 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1775 1.2160 0.3302 5 6 1.5227 2.3494 -0.4245 6 7 0.3636 2.2837 -1.0445 7 14 2.3278 4.0077 -0.1226 8 1 1.4657 5.0841 -0.6735 9 1 2.5046 4.2137 1.3374 10 1 3.6530 4.0437 -0.7917 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7109 1.4419 13 7 3.1844 -2.9800 1.4413 14 6 3.5217 -3.5638 2.6083 15 8 3.2188 -3.0389 3.6589 16 6 4.2741 -4.8696 2.6078 17 6 3.5040 -6.0817 3.1150 18 6 4.6065 -5.4460 3.9751 19 1 4.2738 -4.8842 4.8480 20 6 5.8662 -6.2851 4.1777 21 6 6.8819 -5.9849 3.0753 22 6 6.2045 -6.1955 1.7164 23 6 5.2489 -5.0391 1.4530 24 1 -0.3633 0.0915 -1.0236 25 1 -0.3633 -0.9321 0.4326 26 1 -0.3633 0.8408 0.5909 27 1 -0.0744 3.0966 -1.3414 28 1 1.6084 -2.0282 -0.5146 29 1 3.1499 -1.1382 -0.5143 30 1 3.0415 -0.9515 1.9559 31 1 1.5001 -1.8415 1.9556 32 1 3.4269 -3.3997 0.6011 33 1 2.4707 -5.9283 3.4263 34 1 3.7186 -7.0449 2.6520 35 1 6.3051 -6.0497 5.1473 36 1 5.6042 -7.3428 4.1493 37 1 7.2194 -4.9519 3.1600 38 1 7.7346 -6.6574 3.1703 39 1 6.9609 -6.2343 0.9325 40 1 5.6420 -7.1290 1.7286 41 1 4.6911 -5.2376 0.5377 42 1 5.8248 -4.1217 1.3307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663271732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -6.933436 kcal Electronic energy + Delta-G solvation = -20390.215566 eV Core-core repulsion = 17370.929892 eV Total energy + Delta-G solvation = -3019.285674 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69845 -38.18448 -36.03936 -34.22574 -33.23749 -31.57458 -30.90978 -28.16076 -25.88079 -25.10384 -24.18037 -22.65118 -21.59340 -20.65360 -20.35808 -18.44860 -17.47206 -16.68330 -15.74186 -15.23853 -14.82936 -14.71471 -14.46358 -14.18164 -13.99065 -13.66053 -13.53901 -13.12638 -12.69496 -12.51103 -12.30109 -12.19344 -12.04898 -11.21820 -11.15675 -11.09260 -10.88545 -10.83531 -10.72894 -10.61496 -10.31859 -10.11773 -9.98273 -9.90176 -9.86783 -9.49596 -8.68190 -8.54817 -6.82163 -5.73191 -3.19650 2.68331 3.35825 3.40754 3.45060 3.47436 3.68567 4.37742 4.45252 4.50615 4.57391 4.71994 4.83946 5.00410 5.05012 5.24449 5.31333 5.39583 5.41420 5.56023 5.61273 5.63725 5.67133 5.81467 5.86539 5.87065 5.89921 5.94106 6.01606 6.08021 6.20142 6.26008 6.62406 6.65864 6.77973 6.90851 7.40781 7.71202 7.79199 7.81025 8.36690 8.48903 9.22152 9.84519 10.31599 11.31844 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033548 B = 0.003592 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.428290 B = 7794.203995 C = 7997.619600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.599 5.599 3 C -0.259 4.259 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.909 5.909 7 Si 0.907 3.093 8 H -0.290 1.290 9 H -0.283 1.283 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.719 5.719 14 C 0.540 3.460 15 O -0.545 6.545 16 C -0.142 4.142 17 C -0.158 4.158 18 C -0.116 4.116 19 H 0.115 0.885 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.084 4.084 24 H 0.031 0.969 25 H -0.003 1.003 26 H 0.046 0.954 27 H 0.253 0.747 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.397 0.603 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.016 -19.479 5.013 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.321 5.321 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.737 3.263 8 H -0.216 1.216 9 H -0.210 1.210 10 H -0.209 1.209 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.369 5.369 14 C 0.325 3.675 15 O -0.422 6.422 16 C -0.145 4.145 17 C -0.195 4.195 18 C -0.134 4.134 19 H 0.133 0.867 20 C -0.126 4.126 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.122 4.122 24 H 0.049 0.951 25 H 0.015 0.985 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.631 -18.893 5.662 21.949 hybrid contribution 0.349 0.873 -0.280 0.982 sum 9.980 -18.019 5.382 21.290 Atomic orbital electron populations 1.20848 0.82160 0.95600 0.99549 1.43804 1.02041 1.00295 1.86009 1.19182 0.96970 0.85167 1.37515 0.91287 1.24986 0.97527 0.98492 0.98546 1.70071 1.17188 1.27011 1.41150 0.86298 0.78451 0.83519 0.78051 1.21573 1.20990 1.20896 1.20828 0.96675 0.89123 0.91793 1.22437 0.95620 0.83068 1.02056 1.46033 1.57997 1.24943 1.07965 1.19618 0.79002 0.84904 0.83995 1.90684 1.55257 1.64747 1.31534 1.21085 1.01954 0.93531 0.97935 1.23193 0.97600 0.95382 1.03319 1.22255 0.96594 1.00913 0.93687 0.86655 1.21079 0.93712 0.98707 0.99073 1.21578 0.97600 1.02144 0.94569 1.21476 0.98362 0.98287 0.97498 1.20743 0.96054 0.99730 0.95639 0.95065 0.98468 0.93526 0.93646 0.94093 0.92987 0.91592 0.92318 0.76977 0.88508 0.87940 0.91351 0.91439 0.91506 0.91775 0.91362 0.91768 0.90982 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 8.96 59.85 0.54 4.62 16 2 N -0.60 -15.21 2.93 -181.11 -0.53 -15.74 16 3 C -0.26 -7.20 9.69 -15.06 -0.15 -7.34 16 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 5 C 0.00 0.07 5.13 -17.43 -0.09 -0.02 16 6 N -0.91 -26.67 10.52 55.49 0.58 -26.09 16 7 Si 0.91 22.12 29.57 -169.99 -5.03 17.09 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.14 2.90 5.76 -4.04 -0.02 2.88 16 12 C 0.09 1.78 6.00 -4.04 -0.02 1.76 16 13 N -0.72 -10.88 5.45 -60.29 -0.33 -11.21 16 14 C 0.54 8.56 7.28 -10.98 -0.08 8.48 16 15 O -0.54 -10.95 16.07 5.56 0.09 -10.86 16 16 C -0.14 -1.64 2.49 -156.97 -0.39 -2.03 16 17 C -0.16 -1.59 9.27 -26.77 -0.25 -1.84 16 18 C -0.12 -1.27 5.65 -90.93 -0.51 -1.78 16 19 H 0.12 1.49 7.50 -51.93 -0.39 1.11 16 20 C -0.09 -0.73 5.83 -26.94 -0.16 -0.88 16 21 C -0.12 -0.94 5.93 -26.64 -0.16 -1.10 16 22 C -0.12 -0.88 5.67 -26.93 -0.15 -1.03 16 23 C -0.08 -0.77 4.69 -27.55 -0.13 -0.90 16 24 H 0.03 0.83 7.41 -51.93 -0.38 0.45 16 25 H 0.00 -0.07 8.03 -51.93 -0.42 -0.49 16 26 H 0.05 1.26 7.15 -51.93 -0.37 0.89 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 4.79 7.45 -40.82 -0.30 4.49 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 0.82 7.27 -51.93 -0.38 0.44 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 37 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.44 7.12 -51.93 -0.37 0.07 16 41 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -32.12 333.31 -8.96 -41.09 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.20 Total: -0.11 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.58 Total: 0.80 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: -0.28 Total: -53.03 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.12 -8.96 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663271732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.155 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds