Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 120.00118 * 2 1 4 4 H 1.07991 * 119.99720 * 159.32293 * 3 2 1 5 5 C 1.38814 * 119.99642 * 339.32330 * 3 2 1 6 6 N 1.31612 * 120.00346 * 347.98727 * 5 3 2 7 7 Si 1.86797 * 119.99458 * 168.26640 * 5 3 2 8 8 H 1.48507 * 109.47140 * 179.72429 * 7 5 3 9 9 H 1.48506 * 109.47185 * 299.71995 * 7 5 3 10 10 H 1.48495 * 109.47531 * 59.72330 * 7 5 3 11 11 C 1.46501 * 119.99881 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.46377 * 269.99875 * 11 2 1 13 13 N 1.46501 * 109.46377 * 179.97438 * 12 11 2 14 14 C 1.34781 * 119.99634 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00363 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00025 * 179.97438 * 14 13 12 17 17 C 1.52301 * 115.91499 * 248.29472 * 16 14 13 18 18 C 1.52062 * 115.93066 * 180.02562 * 16 14 13 19 19 H 1.08997 * 117.25641 * 0.46988 * 18 16 14 20 20 C 1.52716 * 120.52296 * 210.74237 * 18 16 14 21 21 C 1.52873 * 110.15094 * 21.47187 * 20 18 16 22 22 C 1.53298 * 108.58101 * 305.47329 * 21 20 18 23 23 C 1.52073 * 114.63596 * 33.38831 * 16 14 13 24 24 H 1.09007 * 109.47040 * 84.89309 * 1 2 3 25 25 H 1.08997 * 109.47171 * 204.89852 * 1 2 3 26 26 H 1.09001 * 109.47147 * 324.90114 * 1 2 3 27 27 H 0.96995 * 120.00285 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47198 * 29.99513 * 11 2 1 29 29 H 1.09001 * 109.47103 * 150.00024 * 11 2 1 30 30 H 1.08996 * 109.47161 * 299.99661 * 12 11 2 31 31 H 1.08993 * 109.47632 * 60.00295 * 12 11 2 32 32 H 0.96997 * 120.00600 * 0.02562 * 13 12 11 33 33 H 1.08998 * 117.53895 * 0.84846 * 17 16 14 34 34 H 1.09000 * 117.53573 * 146.10253 * 17 16 14 35 35 H 1.09002 * 109.35510 * 141.68324 * 20 18 16 36 36 H 1.09001 * 109.35469 * 261.26193 * 20 18 16 37 37 H 1.09001 * 109.62054 * 65.21076 * 21 20 18 38 38 H 1.09011 * 109.61883 * 185.57012 * 21 20 18 39 39 H 1.08999 * 109.61681 * 194.17472 * 22 21 20 40 40 H 1.08994 * 109.62175 * 314.53312 * 22 21 20 41 41 H 1.09005 * 109.26616 * 285.89210 * 23 16 14 42 42 H 1.09003 * 109.27202 * 45.35510 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1775 1.2160 0.3302 5 6 1.5227 2.3494 -0.4245 6 7 0.3636 2.2837 -1.0445 7 14 2.3278 4.0077 -0.1226 8 1 1.4657 5.0841 -0.6735 9 1 2.5046 4.2137 1.3374 10 1 3.6530 4.0437 -0.7917 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7109 1.4419 13 7 3.1844 -2.9800 1.4413 14 6 3.5217 -3.5638 2.6083 15 8 3.2188 -3.0389 3.6589 16 6 4.2741 -4.8696 2.6078 17 6 3.5040 -6.0817 3.1150 18 6 4.6065 -5.4460 3.9751 19 1 4.2738 -4.8842 4.8480 20 6 5.8662 -6.2851 4.1777 21 6 6.8819 -5.9849 3.0753 22 6 6.2045 -6.1955 1.7164 23 6 5.2489 -5.0391 1.4530 24 1 -0.3633 0.0915 -1.0236 25 1 -0.3633 -0.9321 0.4326 26 1 -0.3633 0.8408 0.5909 27 1 -0.0744 3.0966 -1.3414 28 1 1.6084 -2.0282 -0.5146 29 1 3.1499 -1.1382 -0.5143 30 1 3.0415 -0.9515 1.9559 31 1 1.5001 -1.8415 1.9556 32 1 3.4269 -3.3997 0.6011 33 1 2.4707 -5.9283 3.4263 34 1 3.7186 -7.0449 2.6520 35 1 6.3051 -6.0497 5.1473 36 1 5.6042 -7.3428 4.1493 37 1 7.2194 -4.9519 3.1600 38 1 7.7346 -6.6574 3.1703 39 1 6.9609 -6.2343 0.9325 40 1 5.6420 -7.1290 1.7286 41 1 4.6911 -5.2376 0.5377 42 1 5.8248 -4.1217 1.3307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663271732.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -26.819573 kcal Electronic energy + Delta-G solvation = -20391.077894 eV Core-core repulsion = 17370.929892 eV Total energy + Delta-G solvation = -3020.148002 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72210 -39.32660 -37.84263 -35.81897 -33.98203 -33.36451 -31.88713 -29.79081 -27.96132 -26.10921 -25.31134 -24.03114 -22.46324 -22.31908 -21.47733 -19.41708 -18.78396 -18.39934 -17.28670 -16.63650 -16.52385 -15.87907 -15.47359 -15.38785 -15.16704 -14.84835 -14.70791 -14.30101 -14.26819 -14.16006 -13.54033 -13.06910 -12.92512 -12.88213 -12.78242 -12.71064 -12.51793 -12.21131 -11.97855 -11.90123 -11.84478 -11.71324 -11.46365 -10.96311 -10.72568 -10.66476 -10.61415 -10.11739 -8.88993 -7.86608 -5.35401 1.44778 1.47209 1.48081 1.54261 2.10358 2.50935 2.77289 3.27548 3.51205 3.66097 3.71591 3.84660 3.88142 4.12782 4.18348 4.23790 4.30818 4.38148 4.55270 4.61413 4.62537 4.74963 4.79063 4.80211 4.99967 5.00336 5.02179 5.09664 5.14628 5.26160 5.29486 5.30417 5.35368 5.40910 5.46474 5.54070 5.58340 5.68722 6.27771 6.55020 7.10585 7.23056 7.81067 8.23005 9.16776 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033548 B = 0.003592 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.428290 B = 7794.203995 C = 7997.619600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.618 5.618 3 C -0.270 4.270 4 H 0.071 0.929 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.969 3.031 8 H -0.291 1.291 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.149 3.851 12 C 0.115 3.885 13 N -0.706 5.706 14 C 0.533 3.467 15 O -0.595 6.595 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.124 4.124 19 H 0.085 0.915 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.083 4.083 24 H 0.011 0.989 25 H 0.028 0.972 26 H 0.016 0.984 27 H 0.250 0.750 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.415 0.585 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.654 -21.777 4.342 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.341 5.341 3 C -0.400 4.400 4 H 0.088 0.912 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.797 3.203 8 H -0.217 1.217 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.021 3.979 12 C -0.012 4.012 13 N -0.358 5.358 14 C 0.321 3.679 15 O -0.476 6.476 16 C -0.148 4.148 17 C -0.178 4.178 18 C -0.143 4.143 19 H 0.103 0.897 20 C -0.121 4.121 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.121 4.121 24 H 0.030 0.970 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.252 0.748 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.304 -21.242 4.968 24.570 hybrid contribution -0.167 1.538 -0.012 1.547 sum 11.137 -19.704 4.955 23.170 Atomic orbital electron populations 1.20598 0.82427 0.95887 0.97977 1.44044 1.02331 1.01535 1.86196 1.19500 0.97209 0.86464 1.36821 0.91160 1.25750 0.98271 1.01742 0.98810 1.70224 1.18450 1.27433 1.42282 0.85314 0.77864 0.79384 0.77716 1.21718 1.20948 1.19743 1.20937 0.96931 0.87631 0.92359 1.21886 0.94662 0.84067 1.00621 1.45817 1.57303 1.23608 1.09024 1.20463 0.78340 0.86047 0.83072 1.90661 1.57224 1.66413 1.33282 1.21085 1.02699 0.91488 0.99568 1.23298 0.96600 0.95819 1.02113 1.22301 0.98500 1.01164 0.92316 0.89701 1.21102 0.92417 0.99135 0.99446 1.21598 0.98062 1.01626 0.94675 1.21486 0.98307 0.97845 0.97531 1.20808 0.95896 1.00295 0.95061 0.97050 0.95365 0.96468 0.94110 0.91542 0.92128 0.94577 0.94036 0.74802 0.89876 0.84699 0.91353 0.89402 0.93213 0.89873 0.89907 0.90305 0.89230 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.89 8.96 127.77 1.15 10.04 16 2 N -0.62 -31.38 2.93 -726.92 -2.13 -33.51 16 3 C -0.27 -15.08 9.69 84.03 0.81 -14.26 16 4 H 0.07 3.82 7.86 -2.91 -0.02 3.79 16 5 C -0.05 -2.87 5.13 84.86 0.44 -2.44 16 6 N -0.94 -55.85 10.52 21.65 0.23 -55.63 16 7 Si 0.97 45.78 29.57 68.60 2.03 47.81 16 8 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 11 C 0.15 5.80 5.76 86.38 0.50 6.30 16 12 C 0.11 4.34 6.00 86.38 0.52 4.86 16 13 N -0.71 -20.77 5.45 -463.06 -2.52 -23.29 16 14 C 0.53 16.88 7.28 87.66 0.64 17.52 16 15 O -0.59 -24.78 16.07 -3.03 -0.05 -24.83 16 16 C -0.15 -3.15 2.49 -53.77 -0.13 -3.29 16 17 C -0.14 -2.55 9.27 30.57 0.28 -2.26 16 18 C -0.12 -2.59 5.65 -10.99 -0.06 -2.65 16 19 H 0.08 2.30 7.50 -2.39 -0.02 2.28 16 20 C -0.08 -1.18 5.83 30.46 0.18 -1.01 16 21 C -0.12 -1.55 5.93 30.65 0.18 -1.37 16 22 C -0.11 -1.26 5.67 30.47 0.17 -1.09 16 23 C -0.08 -1.29 4.69 30.06 0.14 -1.15 16 24 H 0.01 0.61 7.41 -2.38 -0.02 0.59 16 25 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 26 H 0.02 0.93 7.15 -2.39 -0.02 0.91 16 27 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.07 2.28 8.07 -2.39 -0.02 2.26 16 29 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 9.14 7.45 -92.71 -0.69 8.45 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.14 1.58 7.27 -2.39 -0.02 1.56 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.91 8.06 -2.39 -0.02 0.89 16 37 H 0.05 0.80 8.06 -2.39 -0.02 0.78 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.68 7.12 -2.39 -0.02 0.67 16 41 H 0.09 1.07 7.81 -2.38 -0.02 1.05 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.19 333.31 2.66 -68.53 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.30 Total: 11.73 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 4.81 Total: 9.20 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -4.42 Total: -112.43 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.19 2.66 -68.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663271732.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.706 kcal (2) G-P(sol) polarization free energy of solvation -71.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds