Wall clock time and date at job start Mon Mar 30 2020 00:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46501 * 109.46607 * 2 1 4 4 C 1.36939 * 119.99794 * 263.78179 * 3 2 1 5 5 H 1.08002 * 119.99526 * 142.61911 * 4 3 2 6 6 C 1.38814 * 120.00341 * 322.62285 * 4 3 2 7 7 N 1.31620 * 120.00000 * 157.38948 * 6 4 3 8 8 Si 1.86801 * 119.99844 * 337.38570 * 6 4 3 9 9 H 1.48495 * 109.47149 * 95.71184 * 8 6 4 10 10 H 1.48500 * 109.47159 * 215.71709 * 8 6 4 11 11 H 1.48501 * 109.46953 * 335.71840 * 8 6 4 12 12 C 1.46494 * 120.00291 * 83.78684 * 3 2 1 13 13 C 1.53007 * 109.47170 * 89.99389 * 12 3 2 14 14 N 1.46494 * 109.47170 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99782 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00475 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99773 * 180.02562 * 15 14 13 18 18 C 1.53003 * 115.54871 * 179.97438 * 17 15 14 19 19 C 1.53003 * 117.50046 * 34.33327 * 18 17 15 20 20 C 1.52990 * 117.50029 * 325.66911 * 18 17 15 21 21 C 1.53001 * 117.50036 * 34.33254 * 17 15 14 22 22 C 1.53004 * 117.50230 * 325.66954 * 17 15 14 23 23 H 1.08999 * 109.46622 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47094 * 299.99900 * 1 2 3 25 25 H 1.08999 * 109.47351 * 60.00600 * 1 2 3 26 26 H 1.08996 * 109.47094 * 240.00099 * 2 1 3 27 27 H 1.08994 * 109.47051 * 119.99742 * 2 1 3 28 28 H 0.96995 * 119.99726 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47272 * 329.99957 * 12 3 2 30 30 H 1.08994 * 109.47678 * 209.99486 * 12 3 2 31 31 H 1.08994 * 109.46899 * 300.00574 * 13 12 3 32 32 H 1.09002 * 109.46559 * 60.00132 * 13 12 3 33 33 H 0.97001 * 120.00051 * 0.02562 * 14 13 12 34 34 H 1.09008 * 115.55060 * 179.97438 * 18 17 15 35 35 H 1.09004 * 117.49464 * 359.97438 * 19 18 17 36 36 H 1.08995 * 117.49837 * 145.02219 * 19 18 17 37 37 H 1.08998 * 117.50668 * 214.97784 * 20 18 17 38 38 H 1.09003 * 117.49946 * 359.97438 * 20 18 17 39 39 H 1.08994 * 117.50127 * 359.97438 * 21 17 15 40 40 H 1.09005 * 117.49840 * 145.02165 * 21 17 15 41 41 H 1.08996 * 117.49840 * 214.98021 * 22 17 15 42 42 H 1.08995 * 117.49388 * 359.97438 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3676 1.9840 -1.1790 5 1 2.1496 3.0301 -1.3359 6 6 3.0017 1.2505 -2.1724 7 7 2.9451 1.6519 -3.4246 8 14 3.9355 -0.3063 -1.7319 9 1 3.0564 -1.4855 -1.9368 10 1 5.1349 -0.4262 -2.5992 11 1 4.3573 -0.2447 -0.3094 12 6 2.1330 2.1177 1.2612 13 6 3.5249 1.8960 1.8565 14 7 3.6394 2.6320 3.1180 15 6 4.7863 2.5842 3.8243 16 8 5.7237 1.9325 3.4153 17 6 4.9038 3.3408 5.1223 18 6 6.2493 3.2151 5.8399 19 6 7.5046 3.1009 4.9726 20 6 6.9849 1.8780 5.7325 21 6 3.6487 3.4545 5.9899 22 6 4.1677 4.6778 5.2299 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.3878 1.1392 -4.1187 29 1 1.3775 1.7600 1.9608 30 1 1.9821 3.1812 1.0761 31 1 3.6757 0.8326 2.0416 32 1 4.2804 2.2538 1.1569 33 1 2.8898 3.1536 3.4449 34 1 6.3345 3.7627 6.7785 35 1 7.3718 3.1150 3.8907 36 1 8.4154 3.5726 5.3411 37 1 7.5543 1.5455 6.6005 38 1 6.5102 1.0876 5.1510 39 1 2.7379 2.9825 5.6217 40 1 3.7818 3.4405 7.0717 41 1 4.6419 5.4680 5.8120 42 1 3.5987 5.0103 4.3618 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663393499.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:18 Heat of formation + Delta-G solvation = 17.764558 kcal Electronic energy + Delta-G solvation = -20721.257596 eV Core-core repulsion = 17703.042908 eV Total energy + Delta-G solvation = -3018.214689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49169 -38.66449 -37.94457 -36.80642 -35.26005 -33.86191 -31.77911 -29.53250 -26.29097 -25.32273 -24.45944 -23.61506 -22.90258 -22.77910 -22.04574 -20.46448 -18.74606 -17.76407 -17.37161 -17.26278 -16.49641 -16.32669 -15.91792 -15.48504 -15.26222 -14.95089 -14.62360 -14.45211 -14.11943 -13.88015 -13.51752 -13.31654 -13.08619 -12.82245 -12.71762 -12.56505 -12.37981 -12.34169 -12.18257 -11.89479 -11.73985 -11.71691 -11.43494 -11.09660 -10.69559 -10.55856 -10.37327 -10.07125 -8.87581 -8.25480 -5.62679 1.22911 1.37288 1.46240 1.48700 2.11170 2.35928 2.67950 3.01607 3.28071 3.37117 3.47130 3.60560 3.96603 4.00394 4.15939 4.21223 4.26709 4.29023 4.36636 4.37679 4.59719 4.65485 4.72185 4.76282 4.84718 4.86751 4.93675 5.01393 5.04200 5.05994 5.11042 5.18366 5.21464 5.34655 5.42193 5.48976 5.49796 5.90973 6.13770 6.57903 6.94049 7.28616 7.58054 7.98889 8.94235 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.004881 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.853022 B = 5735.288773 C = 6243.088506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.120 3.880 3 N -0.612 5.612 4 C -0.254 4.254 5 H 0.050 0.950 6 C -0.013 4.013 7 N -0.944 5.944 8 Si 0.931 3.069 9 H -0.271 1.271 10 H -0.312 1.312 11 H -0.268 1.268 12 C 0.147 3.853 13 C 0.112 3.888 14 N -0.711 5.711 15 C 0.532 3.468 16 O -0.578 6.578 17 C -0.155 4.155 18 C -0.096 4.096 19 C -0.183 4.183 20 C -0.178 4.178 21 C -0.133 4.133 22 C -0.140 4.140 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.263 0.737 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.028 0.972 33 H 0.413 0.587 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 3.881 23.407 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.004 4.004 3 N -0.335 5.335 4 C -0.384 4.384 5 H 0.068 0.932 6 C -0.210 4.210 7 N -0.588 5.588 8 Si 0.760 3.240 9 H -0.197 1.197 10 H -0.241 1.241 11 H -0.193 1.193 12 C 0.021 3.979 13 C -0.015 4.015 14 N -0.364 5.364 15 C 0.321 3.679 16 O -0.459 6.459 17 C -0.158 4.158 18 C -0.114 4.114 19 C -0.220 4.220 20 C -0.215 4.215 21 C -0.170 4.170 22 C -0.178 4.178 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.250 0.750 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.045 3.379 22.928 23.175 hybrid contribution 0.707 -0.722 -0.862 1.328 sum 0.662 2.657 22.065 22.235 Atomic orbital electron populations 1.22090 0.96119 1.01320 1.01530 1.21290 0.94888 0.85214 0.99031 1.44218 1.74549 1.12268 1.02467 1.18698 1.32014 0.96070 0.91584 0.93224 1.25976 0.98773 1.01013 0.95215 1.69965 1.45917 1.42591 1.00317 0.86061 0.78410 0.81524 0.77987 1.19730 1.24109 1.19288 1.21144 0.92626 0.97203 0.86977 1.21897 1.00774 0.94828 0.83958 1.45834 1.16148 1.51443 1.22975 1.20275 0.81839 0.80491 0.85332 1.90646 1.39326 1.44318 1.71576 1.20976 0.96048 1.03875 0.94930 1.21558 0.88712 1.01126 1.00029 1.22971 0.97792 1.02848 0.98426 1.22965 1.04173 0.91920 1.02397 1.23290 0.93879 1.00078 0.99777 1.23283 1.00854 0.90214 1.03406 0.91474 0.91520 0.94631 0.94977 0.92529 0.92823 0.89771 0.92016 0.94263 0.95332 0.74954 0.84079 0.91091 0.87680 0.87537 0.90807 0.87278 0.85383 0.85571 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.23 71.98 0.74 -4.39 16 2 C 0.12 4.92 5.01 86.38 0.43 5.35 16 3 N -0.61 -27.62 2.08 -702.00 -1.46 -29.08 16 4 C -0.25 -14.13 9.91 84.03 0.83 -13.30 16 5 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 6 C -0.01 -0.75 5.26 84.86 0.45 -0.30 16 7 N -0.94 -59.29 13.97 21.65 0.30 -58.99 16 8 Si 0.93 47.86 25.05 68.60 1.72 49.58 16 9 H -0.27 -13.07 6.69 99.48 0.67 -12.40 16 10 H -0.31 -16.51 7.11 99.48 0.71 -15.80 16 11 H -0.27 -13.71 7.11 99.48 0.71 -13.01 16 12 C 0.15 5.16 5.80 86.38 0.50 5.66 16 13 C 0.11 4.17 6.00 86.38 0.52 4.68 16 14 N -0.71 -19.95 5.35 -463.07 -2.48 -22.43 16 15 C 0.53 16.36 7.24 87.66 0.63 16.99 16 16 O -0.58 -23.31 11.83 -3.03 -0.04 -23.34 16 17 C -0.15 -3.21 2.46 -52.93 -0.13 -3.34 16 18 C -0.10 -1.97 5.84 -10.79 -0.06 -2.03 16 19 C -0.18 -4.71 9.66 30.62 0.30 -4.42 16 20 C -0.18 -4.43 9.66 30.62 0.30 -4.13 16 21 C -0.13 -1.64 9.60 30.62 0.29 -1.35 16 22 C -0.14 -1.87 9.60 30.62 0.29 -1.58 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.03 1.49 3.60 -2.39 -0.01 1.48 16 27 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 28 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 29 H 0.08 2.34 8.05 -2.39 -0.02 2.32 16 30 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 8.22 6.66 -92.71 -0.62 7.60 16 34 H 0.14 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.07 2.39 6.28 -2.39 -0.01 2.38 16 36 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.37 6.28 -2.39 -0.01 2.35 16 39 H 0.11 1.21 7.55 -2.39 -0.02 1.19 16 40 H 0.13 1.06 8.14 -2.38 -0.02 1.05 16 41 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.10 1.37 7.55 -2.39 -0.02 1.36 16 Total: -1.00 -73.91 335.36 3.47 -70.44 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.34 Total: 15.97 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 5.09 Total: -2.15 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.64 Total: -110.50 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.34 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.72 Total: 49.58 kcal Total: -73.91 3.47 -70.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663393499.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.205 kcal (2) G-P(sol) polarization free energy of solvation -73.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds