Wall clock time and date at job start Mon Mar 30 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00242 * 2 1 4 4 C 1.53004 * 109.46683 * 269.99658 * 3 2 1 5 5 N 1.46496 * 109.47140 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00302 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99679 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00301 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99663 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47349 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47184 * 120.00264 * 10 8 6 13 13 H 1.48507 * 109.46746 * 240.00118 * 10 8 6 14 14 C 1.34778 * 119.99825 * 179.97438 * 2 1 3 15 15 O 1.21279 * 119.99620 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00066 * 359.97438 * 14 2 1 17 17 H 1.09002 * 115.60440 * 34.09546 * 16 14 2 18 18 C 1.52306 * 117.53482 * 180.02562 * 16 14 2 19 19 H 1.08994 * 115.29635 * 0.57647 * 18 16 14 20 20 C 1.52077 * 119.83495 * 217.20048 * 18 16 14 21 21 C 1.52876 * 110.48419 * 310.46777 * 20 18 16 22 22 C 1.53293 * 108.59210 * 305.05700 * 21 20 18 23 23 C 1.52882 * 108.54723 * 74.49655 * 22 21 20 24 24 C 1.52071 * 60.63514 * 107.37870 * 18 16 14 25 25 H 1.08999 * 117.25259 * 253.96043 * 24 18 16 26 26 H 1.09001 * 109.47269 * 270.00905 * 1 2 3 27 27 H 1.09005 * 109.46623 * 30.00835 * 1 2 3 28 28 H 1.09004 * 109.46926 * 150.00123 * 1 2 3 29 29 H 1.09004 * 109.47205 * 29.98826 * 3 2 1 30 30 H 1.08996 * 109.47401 * 149.99434 * 3 2 1 31 31 H 1.08998 * 109.47291 * 299.99664 * 4 3 2 32 32 H 1.09003 * 109.47186 * 59.99430 * 4 3 2 33 33 H 0.97002 * 119.99685 * 359.97438 * 5 4 3 34 34 H 0.97001 * 120.00237 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.26952 * 70.71828 * 20 18 16 36 36 H 1.08996 * 109.26441 * 190.21874 * 20 18 16 37 37 H 1.08997 * 109.61997 * 64.82725 * 21 20 18 38 38 H 1.09005 * 109.61187 * 185.36485 * 21 20 18 39 39 H 1.08998 * 109.64461 * 314.76853 * 22 21 20 40 40 H 1.09004 * 109.77538 * 194.29633 * 22 21 20 41 41 H 1.09004 * 109.35549 * 185.25807 * 23 22 21 42 42 H 1.09000 * 109.35599 * 65.67796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 7 3.1846 2.9792 -1.4427 6 6 3.5274 3.5719 -2.6286 7 1 3.2577 3.1040 -3.5639 8 6 4.2205 4.7746 -2.6287 9 7 4.5488 5.3450 -1.4889 10 14 4.6875 5.5833 -4.2465 11 1 4.2055 4.7473 -5.3752 12 1 4.0634 6.9284 -4.3258 13 1 6.1644 5.7175 -4.3247 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3854 -2.4723 0.0017 17 1 0.4447 -2.4736 -0.5490 18 6 2.2029 -3.7574 0.0028 19 1 3.2843 -3.6214 0.0126 20 6 1.7224 -4.9605 -0.7937 21 6 0.2541 -5.2542 -0.4858 22 6 0.0967 -5.4227 1.0297 23 6 0.1788 -4.0431 1.6835 24 6 1.4686 -3.3395 1.2673 25 1 2.0697 -2.9429 2.0855 26 1 -0.3634 0.0002 1.0277 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0285 0.5137 30 1 3.1499 1.1384 0.5139 31 1 3.0417 0.9506 -1.9563 32 1 1.5002 1.8405 -1.9565 33 1 3.4265 3.3996 -0.6026 34 1 5.0334 6.1853 -1.4889 35 1 1.8324 -4.7542 -1.8583 36 1 2.3258 -5.8295 -0.5315 37 1 -0.3647 -4.4249 -0.8285 38 1 -0.0487 -6.1725 -0.9890 39 1 0.8958 -6.0574 1.4128 40 1 -0.8692 -5.8762 1.2520 41 1 0.1622 -4.1556 2.7676 42 1 -0.6766 -3.4440 1.3714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663869681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:03 Heat of formation + Delta-G solvation = -12.047005 kcal Electronic energy + Delta-G solvation = -20279.659300 eV Core-core repulsion = 17260.151885 eV Total energy + Delta-G solvation = -3019.507415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60278 -38.63223 -35.84372 -34.29705 -33.30837 -31.34898 -31.04388 -28.43825 -26.61314 -25.42959 -23.73607 -22.79481 -22.23327 -21.04555 -19.28855 -18.29341 -17.46844 -17.08925 -15.94047 -15.44397 -15.39288 -14.47899 -14.34617 -14.23958 -13.95265 -13.69130 -13.37368 -13.13295 -12.89291 -12.82683 -12.57556 -12.52537 -12.19965 -11.88343 -11.40344 -11.25962 -11.10129 -10.97100 -10.86531 -10.66205 -10.55209 -10.11190 -10.03914 -9.90697 -9.74175 -9.49246 -8.84857 -8.44059 -6.90043 -5.73389 -3.02468 2.59907 3.10228 3.46128 3.51502 3.54097 3.67072 4.31675 4.47583 4.48629 4.63834 4.69757 4.74134 4.86581 4.96399 5.07790 5.19866 5.26212 5.32295 5.40017 5.42586 5.52444 5.62301 5.64513 5.69055 5.70585 5.77190 5.83744 5.88940 5.96327 6.00364 6.05105 6.07758 6.16494 6.18149 6.60942 6.78567 6.96093 7.57163 7.73685 8.37795 8.45433 9.56078 10.12541 10.47823 11.49701 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.003341 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.901511 B = 8379.567779 C = 8589.145376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.608 5.608 3 C 0.108 3.892 4 C 0.143 3.857 5 N -0.731 5.731 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.538 3.462 15 O -0.535 6.535 16 C -0.191 4.191 17 H 0.123 0.877 18 C -0.107 4.107 19 H 0.113 0.887 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.090 4.090 24 C -0.116 4.116 25 H 0.106 0.894 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.017 0.983 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.220 -21.904 6.598 26.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.341 5.341 3 C -0.015 4.015 4 C 0.015 3.985 5 N -0.375 5.375 6 C -0.368 4.368 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.582 5.582 10 Si 0.740 3.260 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.326 3.674 15 O -0.412 6.412 16 C -0.212 4.212 17 H 0.140 0.860 18 C -0.125 4.125 19 H 0.131 0.869 20 C -0.127 4.127 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.127 4.127 24 C -0.135 4.135 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.564 -21.844 6.419 26.005 hybrid contribution 0.255 0.910 -0.679 1.164 sum -12.309 -20.934 5.740 24.954 Atomic orbital electron populations 1.21802 0.79756 1.03168 1.01576 1.47713 1.06902 1.06158 1.73364 1.21707 0.97447 0.83206 0.99123 1.20905 0.95056 0.89360 0.93228 1.42225 1.67124 1.21595 1.06600 1.19261 1.29283 1.02260 0.85991 0.91153 1.24752 1.01313 0.98055 0.96952 1.69671 1.45147 1.19526 1.23903 0.86087 0.77925 0.79116 0.82905 1.20546 1.21850 1.21802 1.19679 0.87368 0.84366 0.75976 1.90715 1.13838 1.87115 1.49549 1.22527 1.02565 0.90502 1.05585 0.85951 1.21901 0.99391 0.93134 0.98112 0.86860 1.20887 0.96004 0.96187 0.99577 1.21636 0.96644 1.01614 0.96227 1.21570 1.01738 0.96855 0.95500 1.21082 0.95290 0.95864 1.00475 1.22327 0.99517 1.00464 0.91183 0.87632 0.92712 0.90714 0.91290 0.90502 0.89774 0.95959 0.96477 0.78273 0.93543 0.91196 0.91019 0.91823 0.91694 0.91569 0.91855 0.91295 0.91388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.26 59.85 0.61 1.46 16 2 N -0.61 -9.15 2.87 -181.56 -0.52 -9.68 16 3 C 0.11 1.95 5.52 -4.04 -0.02 1.93 16 4 C 0.14 3.17 6.58 -4.04 -0.03 3.14 16 5 N -0.73 -19.70 5.60 -59.91 -0.34 -20.03 16 6 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 7 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 10 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 C 0.54 8.60 7.46 -10.99 -0.08 8.51 16 15 O -0.54 -10.91 15.75 5.56 0.09 -10.83 16 16 C -0.19 -2.19 4.42 -91.79 -0.41 -2.59 16 17 H 0.12 1.17 5.55 -51.93 -0.29 0.89 16 18 C -0.11 -1.15 5.59 -91.92 -0.51 -1.66 16 19 H 0.11 1.47 7.51 -51.93 -0.39 1.08 16 20 C -0.09 -0.74 5.93 -27.26 -0.16 -0.90 16 21 C -0.12 -0.84 5.70 -26.64 -0.15 -1.00 16 22 C -0.12 -0.77 5.93 -26.64 -0.16 -0.92 16 23 C -0.09 -0.64 5.83 -26.94 -0.16 -0.80 16 24 C -0.12 -1.14 5.90 -90.91 -0.54 -1.67 16 25 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.07 0.58 5.99 -51.93 -0.31 0.27 16 29 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 30 H 0.08 1.70 7.42 -51.93 -0.39 1.31 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.38 10.70 7.67 -40.82 -0.31 10.38 16 34 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.44 7.10 -51.93 -0.37 0.07 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.45 8.06 -51.93 -0.42 0.03 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -34.27 335.69 -8.94 -43.21 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.08 Total: 4.73 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -1.85 Total: -2.17 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.13 Total: -58.07 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.27 -8.94 -43.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663869681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.167 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds