Wall clock time and date at job start Mon Mar 30 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00242 * 2 1 4 4 C 1.53004 * 109.46683 * 269.99658 * 3 2 1 5 5 N 1.46496 * 109.47140 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00302 * 179.97438 * 5 4 3 7 7 H 1.07996 * 119.99679 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00301 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99663 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47349 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47184 * 120.00264 * 10 8 6 13 13 H 1.48507 * 109.46746 * 240.00118 * 10 8 6 14 14 C 1.34778 * 119.99825 * 179.97438 * 2 1 3 15 15 O 1.21279 * 119.99620 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00066 * 359.97438 * 14 2 1 17 17 H 1.09002 * 115.60440 * 34.09546 * 16 14 2 18 18 C 1.52306 * 117.53482 * 180.02562 * 16 14 2 19 19 H 1.08994 * 115.29635 * 0.57647 * 18 16 14 20 20 C 1.52077 * 119.83495 * 217.20048 * 18 16 14 21 21 C 1.52876 * 110.48419 * 310.46777 * 20 18 16 22 22 C 1.53293 * 108.59210 * 305.05700 * 21 20 18 23 23 C 1.52882 * 108.54723 * 74.49655 * 22 21 20 24 24 C 1.52071 * 60.63514 * 107.37870 * 18 16 14 25 25 H 1.08999 * 117.25259 * 253.96043 * 24 18 16 26 26 H 1.09001 * 109.47269 * 270.00905 * 1 2 3 27 27 H 1.09005 * 109.46623 * 30.00835 * 1 2 3 28 28 H 1.09004 * 109.46926 * 150.00123 * 1 2 3 29 29 H 1.09004 * 109.47205 * 29.98826 * 3 2 1 30 30 H 1.08996 * 109.47401 * 149.99434 * 3 2 1 31 31 H 1.08998 * 109.47291 * 299.99664 * 4 3 2 32 32 H 1.09003 * 109.47186 * 59.99430 * 4 3 2 33 33 H 0.97002 * 119.99685 * 359.97438 * 5 4 3 34 34 H 0.97001 * 120.00237 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.26952 * 70.71828 * 20 18 16 36 36 H 1.08996 * 109.26441 * 190.21874 * 20 18 16 37 37 H 1.08997 * 109.61997 * 64.82725 * 21 20 18 38 38 H 1.09005 * 109.61187 * 185.36485 * 21 20 18 39 39 H 1.08998 * 109.64461 * 314.76853 * 22 21 20 40 40 H 1.09004 * 109.77538 * 194.29633 * 22 21 20 41 41 H 1.09004 * 109.35549 * 185.25807 * 23 22 21 42 42 H 1.09000 * 109.35599 * 65.67796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 7 3.1846 2.9792 -1.4427 6 6 3.5274 3.5719 -2.6286 7 1 3.2577 3.1040 -3.5639 8 6 4.2205 4.7746 -2.6287 9 7 4.5488 5.3450 -1.4889 10 14 4.6875 5.5833 -4.2465 11 1 4.2055 4.7473 -5.3752 12 1 4.0634 6.9284 -4.3258 13 1 6.1644 5.7175 -4.3247 14 6 2.1389 -1.1672 0.0005 15 8 3.3517 -1.1672 0.0010 16 6 1.3854 -2.4723 0.0017 17 1 0.4447 -2.4736 -0.5490 18 6 2.2029 -3.7574 0.0028 19 1 3.2843 -3.6214 0.0126 20 6 1.7224 -4.9605 -0.7937 21 6 0.2541 -5.2542 -0.4858 22 6 0.0967 -5.4227 1.0297 23 6 0.1788 -4.0431 1.6835 24 6 1.4686 -3.3395 1.2673 25 1 2.0697 -2.9429 2.0855 26 1 -0.3634 0.0002 1.0277 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6084 2.0285 0.5137 30 1 3.1499 1.1384 0.5139 31 1 3.0417 0.9506 -1.9563 32 1 1.5002 1.8405 -1.9565 33 1 3.4265 3.3996 -0.6026 34 1 5.0334 6.1853 -1.4889 35 1 1.8324 -4.7542 -1.8583 36 1 2.3258 -5.8295 -0.5315 37 1 -0.3647 -4.4249 -0.8285 38 1 -0.0487 -6.1725 -0.9890 39 1 0.8958 -6.0574 1.4128 40 1 -0.8692 -5.8762 1.2520 41 1 0.1622 -4.1556 2.7676 42 1 -0.6766 -3.4440 1.3714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663869681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:02 Heat of formation + Delta-G solvation = -33.802763 kcal Electronic energy + Delta-G solvation = -20280.602700 eV Core-core repulsion = 17260.151885 eV Total energy + Delta-G solvation = -3020.450815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62155 -39.65812 -37.39534 -36.10164 -34.09370 -33.33893 -31.66024 -30.13558 -27.64011 -26.73371 -25.28575 -23.69584 -23.40343 -22.40244 -20.31672 -19.30092 -19.08946 -18.48032 -17.30835 -16.81448 -16.37418 -16.20254 -15.43954 -15.26735 -15.11056 -14.85309 -14.78843 -14.65385 -14.26948 -13.95014 -13.33609 -13.23409 -13.12099 -13.04753 -12.91820 -12.74740 -12.67682 -12.40944 -12.12059 -11.96759 -11.90667 -11.70718 -11.18403 -11.04098 -11.00463 -10.68843 -10.59915 -9.72865 -9.11223 -8.01276 -5.32777 1.41799 1.44463 1.46413 1.56579 1.91250 2.52914 2.77121 3.31798 3.42824 3.70300 3.75212 3.88793 4.01838 4.02904 4.12513 4.18748 4.21721 4.28963 4.38434 4.43413 4.50746 4.65136 4.70040 4.72624 4.85732 4.88389 4.95815 4.98099 5.06417 5.07870 5.14381 5.27943 5.34805 5.37706 5.39398 5.46156 5.50579 5.56846 6.20147 6.37832 7.13942 7.26107 7.96702 8.22930 9.22369 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.003341 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.901511 B = 8379.567779 C = 8589.145376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.743 5.743 6 C -0.253 4.253 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.292 1.292 14 C 0.528 3.472 15 O -0.593 6.593 16 C -0.191 4.191 17 H 0.151 0.849 18 C -0.114 4.114 19 H 0.080 0.920 20 C -0.086 4.086 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.086 4.086 24 C -0.099 4.099 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.056 0.944 31 H -0.004 1.004 32 H 0.032 0.968 33 H 0.376 0.624 34 H 0.254 0.746 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.890 -23.184 6.180 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.339 5.339 3 C -0.003 4.003 4 C 0.022 3.978 5 N -0.387 5.387 6 C -0.384 4.384 7 H 0.091 0.909 8 C -0.266 4.266 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.318 3.682 15 O -0.474 6.474 16 C -0.211 4.211 17 H 0.168 0.832 18 C -0.133 4.133 19 H 0.098 0.902 20 C -0.124 4.124 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.124 4.124 24 C -0.118 4.118 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.014 0.986 32 H 0.049 0.951 33 H 0.208 0.792 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.300 -23.157 5.997 28.395 hybrid contribution 1.104 1.271 -0.519 1.761 sum -14.196 -21.886 5.478 26.656 Atomic orbital electron populations 1.22140 0.76420 1.04647 1.03639 1.47831 1.08847 1.04653 1.72538 1.21343 0.97287 0.85371 0.96259 1.20933 0.94290 0.86754 0.95776 1.42407 1.67669 1.22926 1.05678 1.19632 1.29284 1.02645 0.86879 0.90915 1.25660 1.01507 0.98754 1.00649 1.69826 1.45948 1.19883 1.26150 0.84989 0.77202 0.78098 0.78917 1.19100 1.21228 1.21877 1.20554 0.87032 0.85961 0.74654 1.90685 1.16560 1.88018 1.52177 1.22520 1.02970 0.88040 1.07591 0.83208 1.21930 0.97767 0.93944 0.99695 0.90211 1.20900 0.97621 0.95036 0.98796 1.21646 0.94983 1.02444 0.96750 1.21576 1.02651 0.96267 0.94960 1.21141 0.93755 0.96237 1.01222 1.22412 1.00357 0.99130 0.89890 0.89320 0.90324 0.90421 0.88669 0.88483 0.92553 0.98585 0.95059 0.79236 0.93694 0.91604 0.90410 0.91414 0.90304 0.91925 0.89999 0.90307 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.26 127.77 1.31 2.63 16 2 N -0.61 -17.92 2.87 -846.72 -2.43 -20.35 16 3 C 0.12 4.48 5.52 86.38 0.48 4.95 16 4 C 0.15 6.77 6.58 86.38 0.57 7.34 16 5 N -0.74 -40.98 5.60 -343.46 -1.92 -42.90 16 6 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 7 H 0.07 4.19 7.83 -2.91 -0.02 4.17 16 8 C -0.07 -4.38 5.50 84.86 0.47 -3.91 16 9 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 10 Si 0.98 47.60 29.55 68.60 2.03 49.62 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 14 C 0.53 17.12 7.46 87.66 0.65 17.78 16 15 O -0.59 -25.71 15.75 -3.03 -0.05 -25.76 16 16 C -0.19 -4.15 4.42 -11.55 -0.05 -4.20 16 17 H 0.15 2.40 5.55 -2.39 -0.01 2.38 16 18 C -0.11 -2.46 5.59 -11.63 -0.07 -2.52 16 19 H 0.08 2.25 7.51 -2.39 -0.02 2.23 16 20 C -0.09 -1.32 5.93 30.25 0.18 -1.14 16 21 C -0.12 -1.27 5.70 30.65 0.17 -1.09 16 22 C -0.12 -1.10 5.93 30.65 0.18 -0.92 16 23 C -0.09 -0.96 5.83 30.46 0.18 -0.78 16 24 C -0.10 -1.82 5.90 -10.98 -0.06 -1.88 16 25 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 1.40 8.07 -2.38 -0.02 1.38 16 28 H 0.09 1.24 5.99 -2.39 -0.01 1.22 16 29 H 0.10 3.18 8.07 -2.38 -0.02 3.16 16 30 H 0.06 2.39 7.42 -2.39 -0.02 2.38 16 31 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.38 21.59 7.67 -92.71 -0.71 20.88 16 34 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 0.67 7.10 -2.39 -0.02 0.66 16 38 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.06 0.65 8.04 -2.39 -0.02 0.63 16 40 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.08 0.73 8.06 -2.39 -0.02 0.71 16 Total: -1.00 -76.56 335.69 3.04 -73.52 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.28 Total: 24.67 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.85 Total: 2.04 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -4.07 Total: -124.10 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -76.56 3.04 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663869681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.714 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds