Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50709 * 119.99769 * 2 1 4 4 C 1.52999 * 109.46736 * 125.13931 * 3 2 1 5 5 C 1.50697 * 112.85256 * 304.52210 * 4 3 2 6 6 O 1.21287 * 119.99767 * 115.92436 * 5 4 3 7 7 N 1.34772 * 120.00146 * 295.64177 * 5 4 3 8 8 C 1.46505 * 120.00137 * 355.35969 * 7 5 4 9 9 C 1.46502 * 120.00124 * 175.35299 * 7 5 4 10 10 C 1.53006 * 109.46904 * 90.00593 * 9 7 5 11 11 N 1.46502 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.36940 * 119.99509 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00174 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99705 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00076 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99877 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46919 * 90.00581 * 16 14 12 18 18 H 1.48505 * 109.47043 * 210.00168 * 16 14 12 19 19 H 1.48503 * 109.47398 * 330.00233 * 16 14 12 20 20 C 1.53787 * 113.69122 * 75.79571 * 4 3 2 21 21 C 1.53785 * 87.07937 * 89.12340 * 20 4 3 22 22 C 1.53775 * 87.08219 * 25.43306 * 21 20 4 23 23 H 1.08003 * 120.00226 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99758 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00226 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46814 * 5.14636 * 3 2 1 27 27 H 1.08995 * 109.46937 * 245.14219 * 3 2 1 28 28 H 1.09003 * 109.46817 * 94.48665 * 8 7 5 29 29 H 1.09000 * 109.47294 * 214.48352 * 8 7 5 30 30 H 1.08997 * 109.46849 * 334.48514 * 8 7 5 31 31 H 1.08999 * 109.47177 * 210.00425 * 9 7 5 32 32 H 1.08996 * 109.47318 * 330.00847 * 9 7 5 33 33 H 1.08999 * 109.47066 * 299.99900 * 10 9 7 34 34 H 1.08996 * 109.46925 * 60.00013 * 10 9 7 35 35 H 0.96998 * 120.00028 * 0.02562 * 11 10 9 36 36 H 0.96994 * 120.00076 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.60981 * 203.66807 * 20 4 3 38 38 H 1.08998 * 113.61219 * 334.57577 * 20 4 3 39 39 H 1.09005 * 113.61137 * 270.88236 * 21 20 4 40 40 H 1.09000 * 113.61163 * 139.98464 * 21 20 4 41 41 H 1.09005 * 113.61431 * 220.01830 * 22 21 20 42 42 H 1.08999 * 113.61737 * 89.12015 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0374 1.3317 1.1796 5 6 2.3595 1.0915 2.5039 6 8 2.6325 0.1053 3.1549 7 7 1.4539 1.9755 2.9675 8 6 1.2029 3.2193 2.2351 9 6 0.7205 1.6927 4.2037 10 6 1.4977 2.2519 5.3971 11 7 0.7645 1.9685 6.6334 12 6 1.2710 2.3765 7.8386 13 1 2.2105 2.9075 7.8775 14 6 0.5766 2.1075 9.0101 15 7 1.0630 2.5001 10.1683 16 14 -1.0490 1.1897 8.9425 17 1 -0.7981 -0.2700 9.0495 18 1 -1.9119 1.6275 10.0691 19 1 -1.7295 1.4820 7.6553 20 6 4.2922 0.4689 0.9645 21 6 4.9416 1.7110 0.3316 22 6 3.9727 2.5524 1.1789 23 1 -0.5401 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1315 0.0922 27 1 2.6192 1.4039 -0.9324 28 1 0.3528 3.0821 1.5667 29 1 0.9837 4.0194 2.9421 30 1 2.0853 3.4817 1.6516 31 1 -0.2625 2.1615 4.1584 32 1 0.6041 0.6150 4.3187 33 1 2.4806 1.7831 5.4425 34 1 1.6140 3.3295 5.2821 35 1 -0.0792 1.4913 6.5984 36 1 0.5776 2.3125 10.9869 37 1 4.7685 0.1521 1.8923 38 1 4.1429 -0.3513 0.2624 39 1 4.7693 1.7949 -0.7415 40 1 5.9885 1.8433 0.6048 41 1 3.5655 3.4141 0.6499 42 1 4.3617 2.8051 2.1652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664169821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = 23.572486 kcal Electronic energy + Delta-G solvation = -20920.026319 eV Core-core repulsion = 17902.063481 eV Total energy + Delta-G solvation = -3017.962838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.99298 -38.03412 -35.92344 -34.63810 -34.30367 -31.54003 -29.32473 -28.11191 -26.67949 -25.90996 -24.91121 -23.22025 -21.39476 -20.27568 -19.97029 -18.50414 -17.56014 -17.03197 -16.20587 -15.65802 -15.21148 -14.80572 -14.61543 -14.20518 -14.03579 -13.70540 -13.51744 -13.09460 -12.77168 -12.63759 -12.59663 -12.36572 -12.09265 -11.96901 -11.52839 -11.28817 -11.26380 -11.08480 -11.02070 -10.72322 -10.70024 -10.41449 -10.14440 -9.60008 -9.56620 -9.33202 -8.86121 -8.48504 -7.20796 -5.73470 -3.09286 2.10281 2.77109 3.09208 3.40117 3.44051 3.48096 4.15446 4.25154 4.45409 4.55729 4.62547 4.70688 4.89749 4.99434 5.07970 5.22813 5.29718 5.30932 5.43676 5.46030 5.52677 5.59250 5.61560 5.61870 5.66982 5.72340 5.73789 5.81500 5.86094 5.95803 5.99923 6.19576 6.45232 6.52271 6.57653 6.68523 6.87660 7.53433 8.02110 8.34838 8.45065 9.23763 9.96037 10.15670 11.45025 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.004464 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.750722 B = 6270.681702 C = 6715.991096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.068 4.068 4 C -0.101 4.101 5 C 0.529 3.471 6 O -0.531 6.531 7 N -0.608 5.608 8 C 0.069 3.931 9 C 0.106 3.894 10 C 0.147 3.853 11 N -0.754 5.754 12 C -0.242 4.242 13 H 0.089 0.911 14 C 0.004 3.996 15 N -0.935 5.935 16 Si 0.886 3.114 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.277 1.277 20 C -0.112 4.112 21 C -0.141 4.141 22 C -0.127 4.127 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 0.175 -26.530 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.105 4.105 4 C -0.104 4.104 5 C 0.317 3.683 6 O -0.407 6.407 7 N -0.341 5.341 8 C -0.074 4.074 9 C -0.017 4.017 10 C 0.019 3.981 11 N -0.400 5.400 12 C -0.372 4.372 13 H 0.107 0.893 14 C -0.191 4.191 15 N -0.583 5.583 16 Si 0.716 3.284 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.204 1.204 20 C -0.150 4.150 21 C -0.178 4.178 22 C -0.165 4.165 23 H 0.113 0.887 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.372 -0.242 -26.001 26.110 hybrid contribution -1.314 -0.563 0.219 1.446 sum 1.058 -0.805 -25.782 25.816 Atomic orbital electron populations 1.23811 0.95867 1.01805 1.00966 1.22850 0.96010 0.98372 0.99920 1.20597 0.97150 0.96374 0.96355 1.22100 0.95113 0.99954 0.93258 1.20305 0.78785 0.82549 0.86689 1.90714 1.62067 1.28971 1.58908 1.47681 1.40934 1.20313 1.25168 1.22057 1.01723 0.86471 0.97144 1.21688 0.94661 1.02130 0.83230 1.20885 0.95103 0.97281 0.84837 1.42568 1.24602 1.70199 1.02620 1.19040 1.05320 1.30360 0.82488 0.89272 1.24662 0.98554 1.00811 0.95102 1.69701 1.39772 1.51735 0.97087 0.86528 0.84820 0.80249 0.76820 1.20974 1.21680 1.20372 1.22834 0.93904 0.96405 1.01818 1.22847 0.99175 0.96450 0.99347 1.23047 0.96239 0.95661 1.01525 0.88704 0.88529 0.87262 0.90421 0.89874 0.92944 0.90858 0.90228 0.90748 0.90069 0.95085 0.95695 0.80705 0.93057 0.88910 0.90984 0.89943 0.90944 0.90397 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.78 14.32 29.02 0.42 -1.36 16 2 C -0.15 -1.50 8.63 -36.02 -0.31 -1.81 16 3 C -0.07 -0.56 4.77 -27.88 -0.13 -0.70 16 4 C -0.10 -1.05 0.30 -154.85 -0.05 -1.10 16 5 C 0.53 7.89 5.94 -10.99 -0.07 7.83 16 6 O -0.53 -10.35 15.75 5.55 0.09 -10.26 16 7 N -0.61 -8.50 2.87 -181.57 -0.52 -9.03 16 8 C 0.07 0.68 9.00 59.85 0.54 1.22 16 9 C 0.11 1.79 5.51 -4.04 -0.02 1.77 16 10 C 0.15 3.10 6.58 -4.04 -0.03 3.07 16 11 N -0.75 -19.04 5.41 -59.91 -0.32 -19.36 16 12 C -0.24 -7.19 10.47 -15.06 -0.16 -7.35 16 13 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 14 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 15 N -0.93 -30.16 13.97 55.49 0.78 -29.38 16 16 Si 0.89 22.76 27.73 -169.99 -4.71 18.05 16 17 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 18 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.28 -6.65 6.52 56.52 0.37 -6.29 16 20 C -0.11 -1.14 6.81 -25.91 -0.18 -1.31 16 21 C -0.14 -1.07 7.73 -25.92 -0.20 -1.27 16 22 C -0.13 -1.09 5.54 -25.92 -0.14 -1.23 16 23 H 0.09 0.81 7.84 -52.48 -0.41 0.40 16 24 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 25 H 0.11 1.11 7.98 -52.48 -0.42 0.69 16 26 H 0.08 0.58 5.47 -51.93 -0.28 0.29 16 27 H 0.08 0.55 7.31 -51.93 -0.38 0.17 16 28 H 0.05 0.42 7.41 -51.93 -0.38 0.04 16 29 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 30 H 0.08 0.63 4.00 -51.93 -0.21 0.42 16 31 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 32 H 0.08 1.52 7.49 -51.93 -0.39 1.13 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.36 8.78 5.53 -40.82 -0.23 8.55 16 36 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 37 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 38 H 0.07 0.67 7.96 -51.93 -0.41 0.25 16 39 H 0.08 0.49 7.61 -51.93 -0.40 0.10 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.50 7.03 -51.93 -0.36 0.14 16 42 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -35.12 334.02 -6.91 -42.02 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.82 Total: 5.14 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.42 Total: -2.21 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.07 Total: -57.77 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.12 -6.91 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664169821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.593 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds