Wall clock time and date at job start Mon Mar 30 2020 01:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50709 * 119.99769 * 2 1 4 4 C 1.52999 * 109.46736 * 125.13931 * 3 2 1 5 5 C 1.50697 * 112.85256 * 304.52210 * 4 3 2 6 6 O 1.21287 * 119.99767 * 115.92436 * 5 4 3 7 7 N 1.34772 * 120.00146 * 295.64177 * 5 4 3 8 8 C 1.46505 * 120.00137 * 355.35969 * 7 5 4 9 9 C 1.46502 * 120.00124 * 175.35299 * 7 5 4 10 10 C 1.53006 * 109.46904 * 90.00593 * 9 7 5 11 11 N 1.46502 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.36940 * 119.99509 * 179.97438 * 11 10 9 13 13 H 1.07992 * 120.00174 * 0.02562 * 12 11 10 14 14 C 1.38816 * 119.99705 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00076 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99877 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46919 * 90.00581 * 16 14 12 18 18 H 1.48505 * 109.47043 * 210.00168 * 16 14 12 19 19 H 1.48503 * 109.47398 * 330.00233 * 16 14 12 20 20 C 1.53787 * 113.69122 * 75.79571 * 4 3 2 21 21 C 1.53785 * 87.07937 * 89.12340 * 20 4 3 22 22 C 1.53775 * 87.08219 * 25.43306 * 21 20 4 23 23 H 1.08003 * 120.00226 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.99758 * 180.02562 * 1 2 3 25 25 H 1.08003 * 120.00226 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.46814 * 5.14636 * 3 2 1 27 27 H 1.08995 * 109.46937 * 245.14219 * 3 2 1 28 28 H 1.09003 * 109.46817 * 94.48665 * 8 7 5 29 29 H 1.09000 * 109.47294 * 214.48352 * 8 7 5 30 30 H 1.08997 * 109.46849 * 334.48514 * 8 7 5 31 31 H 1.08999 * 109.47177 * 210.00425 * 9 7 5 32 32 H 1.08996 * 109.47318 * 330.00847 * 9 7 5 33 33 H 1.08999 * 109.47066 * 299.99900 * 10 9 7 34 34 H 1.08996 * 109.46925 * 60.00013 * 10 9 7 35 35 H 0.96998 * 120.00028 * 0.02562 * 11 10 9 36 36 H 0.96994 * 120.00076 * 179.97438 * 15 14 12 37 37 H 1.08997 * 113.60981 * 203.66807 * 20 4 3 38 38 H 1.08998 * 113.61219 * 334.57577 * 20 4 3 39 39 H 1.09005 * 113.61137 * 270.88236 * 21 20 4 40 40 H 1.09000 * 113.61163 * 139.98464 * 21 20 4 41 41 H 1.09005 * 113.61431 * 220.01830 * 22 21 20 42 42 H 1.08999 * 113.61737 * 89.12015 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0374 1.3317 1.1796 5 6 2.3595 1.0915 2.5039 6 8 2.6325 0.1053 3.1549 7 7 1.4539 1.9755 2.9675 8 6 1.2029 3.2193 2.2351 9 6 0.7205 1.6927 4.2037 10 6 1.4977 2.2519 5.3971 11 7 0.7645 1.9685 6.6334 12 6 1.2710 2.3765 7.8386 13 1 2.2105 2.9075 7.8775 14 6 0.5766 2.1075 9.0101 15 7 1.0630 2.5001 10.1683 16 14 -1.0490 1.1897 8.9425 17 1 -0.7981 -0.2700 9.0495 18 1 -1.9119 1.6275 10.0691 19 1 -1.7295 1.4820 7.6553 20 6 4.2922 0.4689 0.9645 21 6 4.9416 1.7110 0.3316 22 6 3.9727 2.5524 1.1789 23 1 -0.5401 0.9353 -0.0004 24 1 -0.5400 -0.9353 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1315 0.0922 27 1 2.6192 1.4039 -0.9324 28 1 0.3528 3.0821 1.5667 29 1 0.9837 4.0194 2.9421 30 1 2.0853 3.4817 1.6516 31 1 -0.2625 2.1615 4.1584 32 1 0.6041 0.6150 4.3187 33 1 2.4806 1.7831 5.4425 34 1 1.6140 3.3295 5.2821 35 1 -0.0792 1.4913 6.5984 36 1 0.5776 2.3125 10.9869 37 1 4.7685 0.1521 1.8923 38 1 4.1429 -0.3513 0.2624 39 1 4.7693 1.7949 -0.7415 40 1 5.9885 1.8433 0.6048 41 1 3.5655 3.4141 0.6499 42 1 4.3617 2.8051 2.1652 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664169821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:55 Heat of formation + Delta-G solvation = -0.168636 kcal Electronic energy + Delta-G solvation = -20921.055811 eV Core-core repulsion = 17902.063481 eV Total energy + Delta-G solvation = -3018.992330 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93516 -39.07179 -37.42538 -36.18102 -35.18113 -33.66595 -30.75717 -29.06981 -27.71296 -26.70693 -26.08687 -24.72412 -23.21488 -21.15176 -20.85204 -19.80645 -19.31609 -17.94088 -17.45198 -16.66007 -16.49240 -16.32233 -15.73965 -15.43549 -15.24400 -15.03452 -14.83324 -14.72734 -13.99805 -13.71446 -13.49548 -13.37176 -13.17744 -13.02889 -12.94586 -12.79596 -12.60606 -12.36425 -12.13671 -12.03150 -11.93306 -11.85781 -11.45921 -11.11544 -11.05702 -10.55176 -10.17347 -9.67386 -9.40517 -8.08440 -5.44511 1.34331 1.39124 1.40041 1.46569 1.65104 1.99249 2.44444 3.22518 3.37834 3.46209 3.63283 3.75621 3.85758 3.92141 4.10402 4.14976 4.20153 4.33223 4.35331 4.48812 4.58846 4.68410 4.70263 4.78900 4.86315 4.90477 4.95873 4.98716 5.01496 5.03822 5.11728 5.16678 5.22845 5.46873 5.54353 5.67885 5.75096 5.87529 6.14457 6.44620 6.99636 7.21513 7.72855 7.94707 9.13015 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.004464 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.750722 B = 6270.681702 C = 6715.991096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C -0.061 4.061 4 C -0.097 4.097 5 C 0.520 3.480 6 O -0.590 6.590 7 N -0.607 5.607 8 C 0.060 3.940 9 C 0.118 3.882 10 C 0.152 3.848 11 N -0.755 5.755 12 C -0.245 4.245 13 H 0.051 0.949 14 C -0.060 4.060 15 N -0.982 5.982 16 Si 0.959 3.041 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.246 1.246 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.125 4.125 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.060 0.940 33 H -0.001 1.001 34 H 0.033 0.967 35 H 0.368 0.632 36 H 0.261 0.739 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 1.170 -29.787 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.186 4.186 3 C -0.098 4.098 4 C -0.100 4.100 5 C 0.310 3.690 6 O -0.470 6.470 7 N -0.338 5.338 8 C -0.081 4.081 9 C -0.006 4.006 10 C 0.024 3.976 11 N -0.401 5.401 12 C -0.375 4.375 13 H 0.069 0.931 14 C -0.252 4.252 15 N -0.632 5.632 16 Si 0.785 3.215 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.170 1.170 20 C -0.163 4.163 21 C -0.161 4.161 22 C -0.162 4.162 23 H 0.127 0.873 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.017 0.983 34 H 0.051 0.949 35 H 0.202 0.798 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.636 0.792 -29.331 29.349 hybrid contribution -0.660 -0.863 1.255 1.660 sum -0.024 -0.071 -28.077 28.077 Atomic orbital electron populations 1.23959 0.95896 1.02438 1.00561 1.22973 0.96361 0.98871 1.00349 1.20654 0.96981 0.95939 0.96179 1.22213 0.95204 1.01111 0.91445 1.21254 0.78223 0.81627 0.87896 1.90683 1.63904 1.31524 1.60879 1.47807 1.40215 1.21693 1.24116 1.22399 1.03922 0.84326 0.97446 1.21381 0.95418 1.00805 0.82984 1.20935 0.93968 0.97524 0.85171 1.42513 1.25066 1.70049 1.02486 1.18984 1.04153 1.29774 0.84620 0.93089 1.25564 1.03071 1.02130 0.94406 1.69886 1.41840 1.53436 0.98004 0.85357 0.79559 0.78292 0.78281 1.20757 1.21407 1.16973 1.22857 0.94539 0.98037 1.00818 1.22840 0.98939 0.93703 1.00614 1.23058 0.95822 0.96169 1.01133 0.87268 0.88833 0.88577 0.88703 0.87098 0.90160 0.90671 0.88120 0.87981 0.92116 0.98313 0.94884 0.79839 0.93044 0.92390 0.90334 0.86972 0.90741 0.87043 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.22 14.32 67.78 0.97 -2.25 16 2 C -0.17 -2.96 8.63 25.65 0.22 -2.74 16 3 C -0.06 -0.79 4.77 29.85 0.14 -0.65 16 4 C -0.10 -1.84 0.30 -52.40 -0.02 -1.85 16 5 C 0.52 15.40 5.94 87.66 0.52 15.92 16 6 O -0.59 -24.11 15.75 -3.05 -0.05 -24.16 16 7 N -0.61 -16.09 2.87 -846.74 -2.43 -18.52 16 8 C 0.06 0.96 9.00 127.77 1.15 2.11 16 9 C 0.12 3.89 5.51 86.38 0.48 4.37 16 10 C 0.15 6.46 6.58 86.38 0.57 7.02 16 11 N -0.75 -38.13 5.41 -343.44 -1.86 -39.98 16 12 C -0.24 -14.88 10.47 84.03 0.88 -14.00 16 13 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 14 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 15 N -0.98 -64.84 13.97 21.65 0.30 -64.54 16 16 Si 0.96 46.74 27.73 68.60 1.90 48.64 16 17 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 19 H -0.25 -10.59 6.52 99.48 0.65 -9.94 16 20 C -0.12 -2.47 6.81 31.12 0.21 -2.26 16 21 C -0.12 -1.54 7.73 31.12 0.24 -1.30 16 22 C -0.12 -1.79 5.54 31.12 0.17 -1.62 16 23 H 0.11 1.49 7.84 -2.91 -0.02 1.47 16 24 H 0.09 1.58 8.06 -2.91 -0.02 1.55 16 25 H 0.10 1.91 7.98 -2.91 -0.02 1.89 16 26 H 0.09 0.93 5.47 -2.39 -0.01 0.92 16 27 H 0.11 0.90 7.31 -2.39 -0.02 0.88 16 28 H 0.08 0.90 7.41 -2.39 -0.02 0.88 16 29 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 30 H 0.10 1.18 4.00 -2.39 -0.01 1.17 16 31 H 0.10 2.81 8.07 -2.39 -0.02 2.79 16 32 H 0.06 2.27 7.49 -2.39 -0.02 2.25 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.37 17.36 5.53 -92.71 -0.51 16.85 16 36 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 37 H 0.06 1.55 7.69 -2.39 -0.02 1.53 16 38 H 0.08 1.41 7.96 -2.39 -0.02 1.39 16 39 H 0.11 0.79 7.61 -2.38 -0.02 0.78 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.88 7.03 -2.38 -0.02 0.86 16 42 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 Total: -1.00 -80.62 334.02 4.29 -76.32 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.42 Total: 22.70 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 6.01 Total: -0.46 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -3.99 Total: -123.04 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.90 Total: 48.64 kcal Total: -80.62 4.29 -76.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664169821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.154 kcal (2) G-P(sol) polarization free energy of solvation -80.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds