Wall clock time and date at job start Mon Mar 30 2020 00:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47317 * 2 1 4 4 C 1.34771 * 119.99825 * 275.13923 * 3 2 1 5 5 O 1.21281 * 119.99696 * 185.19221 * 4 3 2 6 6 C 1.50703 * 120.00659 * 5.19080 * 4 3 2 7 7 C 1.52996 * 109.47628 * 180.02562 * 6 4 3 8 8 C 1.53006 * 117.49750 * 243.62539 * 7 6 4 9 9 C 1.52992 * 117.49894 * 175.00016 * 7 6 4 10 10 C 1.46500 * 119.99557 * 95.13435 * 3 2 1 11 11 H 1.09002 * 110.91055 * 190.39609 * 10 3 2 12 12 C 1.55157 * 111.00060 * 66.50160 * 10 3 2 13 13 C 1.54331 * 102.93805 * 277.42019 * 12 10 3 14 14 N 1.47023 * 107.27136 * 337.81157 * 13 12 10 15 15 C 1.36936 * 125.64613 * 178.97837 * 14 13 12 16 16 H 1.07995 * 119.99945 * 174.93299 * 15 14 13 17 17 C 1.38815 * 119.99813 * 354.92739 * 15 14 13 18 18 N 1.31619 * 120.00246 * 5.72192 * 17 15 14 19 19 Si 1.86805 * 119.99682 * 185.72317 * 17 15 14 20 20 H 1.48505 * 109.47043 * 94.99931 * 19 17 15 21 21 H 1.48496 * 109.46889 * 214.99539 * 19 17 15 22 22 H 1.48501 * 109.47203 * 334.99561 * 19 17 15 23 23 C 1.47423 * 108.70258 * 358.93967 * 14 13 12 24 24 H 1.09000 * 109.47271 * 300.00219 * 1 2 3 25 25 H 1.09002 * 109.47231 * 59.99754 * 1 2 3 26 26 H 1.09005 * 109.47790 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46879 * 239.99933 * 2 1 3 28 28 H 1.08995 * 109.47096 * 120.00567 * 2 1 3 29 29 H 1.09004 * 109.46698 * 300.00683 * 6 4 3 30 30 H 1.08995 * 109.47039 * 59.99735 * 6 4 3 31 31 H 1.09001 * 115.54935 * 29.32456 * 7 6 4 32 32 H 1.09001 * 117.49333 * 359.97438 * 8 7 6 33 33 H 1.08993 * 117.49578 * 145.01842 * 8 7 6 34 34 H 1.09006 * 117.49499 * 214.97238 * 9 7 6 35 35 H 1.08997 * 117.50205 * 359.97438 * 9 7 6 36 36 H 1.08997 * 110.71841 * 159.06331 * 12 10 3 37 37 H 1.08997 * 110.72864 * 35.78540 * 12 10 3 38 38 H 1.09000 * 109.87965 * 97.22842 * 13 12 10 39 39 H 1.08997 * 109.87954 * 218.38913 * 13 12 10 40 40 H 0.97002 * 119.99553 * 179.97438 * 18 17 15 41 41 H 1.08992 * 110.36360 * 142.96789 * 23 14 13 42 42 H 1.09001 * 110.36765 * 265.28933 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1444 2.0513 -1.1625 5 8 2.6366 3.1598 -1.1731 6 6 1.6739 1.4235 -2.4492 7 6 1.9311 2.3860 -3.6103 8 6 0.7138 2.9205 -4.3677 9 6 1.6289 1.8845 -5.0238 10 6 2.3696 2.0339 1.2637 11 1 2.5372 3.1009 1.1170 12 6 3.6078 1.3603 1.9120 13 6 2.9976 0.1454 2.6424 14 7 1.5752 0.4411 2.8681 15 6 0.6726 -0.3934 3.4715 16 1 -0.3336 -0.0517 3.6644 17 6 1.0509 -1.6786 3.8349 18 7 2.3044 -2.0576 3.7036 19 14 -0.2193 -2.8702 4.5105 20 1 -0.7399 -3.7169 3.4071 21 1 0.4108 -3.7332 5.5416 22 1 -1.3386 -2.1077 5.1197 23 6 1.2819 1.7852 2.3382 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3635 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2180 0.4946 -2.6203 30 1 0.6068 1.2123 -2.3814 31 1 2.7810 3.0570 -3.4853 32 1 -0.2701 2.5861 -4.0389 33 1 0.7628 3.9434 -4.7410 34 1 2.2797 2.2260 -5.8288 35 1 1.2472 0.8687 -5.1265 36 1 4.0871 2.0355 2.6209 37 1 4.3147 1.0360 1.1483 38 1 3.0972 -0.7469 2.0245 39 1 3.5013 -0.0043 3.5974 40 1 2.5688 -2.9556 3.9580 41 1 0.2903 1.8066 1.8862 42 1 1.3545 2.5297 3.1309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665692045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:32 Heat of formation + Delta-G solvation = 22.293414 kcal Electronic energy + Delta-G solvation = -21590.066131 eV Core-core repulsion = 18572.047828 eV Total energy + Delta-G solvation = -3018.018303 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99508 -37.89815 -36.72604 -34.54949 -32.47149 -30.27625 -29.43895 -28.74329 -27.21102 -24.45617 -22.86880 -22.42401 -21.47641 -20.08751 -19.98164 -18.43412 -16.95148 -16.92159 -16.10204 -15.47565 -14.72068 -14.66874 -14.17231 -13.79168 -13.71534 -13.39617 -12.93439 -12.73027 -12.20344 -12.05229 -11.90866 -11.81709 -11.58119 -11.43012 -11.18505 -10.99231 -10.91031 -10.80140 -10.44637 -10.38859 -10.15446 -10.04729 -9.98609 -9.84392 -9.68733 -9.17915 -8.66462 -8.12760 -6.87510 -5.77776 -3.10579 2.97695 3.35122 3.39668 3.42064 3.43519 3.79443 4.45056 4.64912 4.74870 4.88953 5.10891 5.35682 5.39291 5.42571 5.50415 5.54344 5.56007 5.60232 5.70064 5.73915 5.82863 5.90497 5.93693 6.01561 6.04160 6.22349 6.31067 6.31784 6.36847 6.46948 6.54912 6.64742 6.77508 6.92445 7.18776 7.51503 7.54831 7.76857 7.94918 8.18135 8.57660 9.15773 9.75693 10.42266 11.33679 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.005372 C = 0.004886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.304164 B = 5210.901269 C = 5728.769889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.089 3.911 3 N -0.586 5.586 4 C 0.514 3.486 5 O -0.556 6.556 6 C -0.110 4.110 7 C -0.136 4.136 8 C -0.179 4.179 9 C -0.183 4.183 10 C 0.124 3.876 11 H 0.095 0.905 12 C -0.156 4.156 13 C 0.173 3.827 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.920 5.920 19 Si 0.907 3.093 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.282 1.282 23 C 0.123 3.877 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.252 0.748 41 H 0.049 0.951 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 4.865 -12.342 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 N -0.317 5.317 4 C 0.302 3.698 5 O -0.435 6.435 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.216 4.216 9 C -0.220 4.220 10 C 0.020 3.980 11 H 0.113 0.887 12 C -0.195 4.195 13 C 0.049 3.951 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.201 4.201 18 N -0.568 5.568 19 Si 0.737 3.263 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.003 4.003 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.084 5.209 -12.228 13.335 hybrid contribution -0.697 -0.841 0.457 1.184 sum -1.781 4.368 -11.770 12.681 Atomic orbital electron populations 1.22180 0.96153 1.02013 1.01437 1.22017 0.94739 0.81739 1.04849 1.47879 1.63789 1.14481 1.05586 1.20510 0.78366 0.85624 0.85298 1.90621 1.45449 1.20597 1.86844 1.21303 1.03024 0.99019 0.91663 1.22077 1.00796 1.01660 0.90925 1.23009 0.95167 0.98882 1.04577 1.22985 1.03811 0.99304 0.95910 1.22208 0.95980 0.96806 0.83043 0.88658 1.23263 0.96799 1.00018 0.99456 1.21236 0.83792 0.92347 0.97734 1.44544 1.06159 1.13262 1.68862 1.18991 0.92183 0.92291 1.31761 0.90555 1.24760 0.96351 0.97366 1.01623 1.69970 1.14478 1.18644 1.53675 0.86179 0.80509 0.81311 0.78274 1.21638 1.21849 1.20731 1.21953 0.96217 0.89104 0.93063 0.90891 0.94503 0.92054 0.92595 0.85208 0.88791 0.88778 0.86546 0.88940 0.88948 0.88891 0.88853 0.91545 0.91966 0.92924 0.94156 0.93740 0.93339 0.95401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.99 37.16 0.37 -2.20 16 2 C 0.09 1.51 5.04 -4.04 -0.02 1.49 16 3 N -0.59 -10.11 2.52 -163.68 -0.41 -10.52 16 4 C 0.51 8.58 7.63 -10.99 -0.08 8.49 16 5 O -0.56 -10.84 15.00 5.56 0.08 -10.75 16 6 C -0.11 -1.42 4.65 -27.88 -0.13 -1.55 16 7 C -0.14 -1.66 5.41 -90.62 -0.49 -2.15 16 8 C -0.18 -1.89 10.18 -26.72 -0.27 -2.16 16 9 C -0.18 -1.78 10.25 -26.73 -0.27 -2.05 16 10 C 0.12 2.29 3.61 -65.79 -0.24 2.05 16 11 H 0.10 1.76 7.12 -51.93 -0.37 1.39 16 12 C -0.16 -2.95 6.56 -24.89 -0.16 -3.11 16 13 C 0.17 3.94 4.31 -3.06 -0.01 3.93 16 14 N -0.60 -13.99 2.19 -170.08 -0.37 -14.36 16 15 C -0.22 -5.73 10.27 -15.06 -0.15 -5.89 16 16 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 17 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 18 N -0.92 -25.32 10.35 55.49 0.57 -24.75 16 19 Si 0.91 21.04 29.56 -169.99 -5.02 16.01 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.12 2.46 6.05 -2.53 -0.02 2.45 16 24 H 0.07 1.33 5.63 -51.93 -0.29 1.04 16 25 H 0.04 0.50 6.32 -51.93 -0.33 0.18 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.82 6.71 -51.93 -0.35 0.48 16 28 H 0.13 2.70 3.73 -51.93 -0.19 2.51 16 29 H 0.09 1.10 7.28 -51.93 -0.38 0.72 16 30 H 0.09 1.12 6.09 -51.93 -0.32 0.81 16 31 H 0.12 1.62 7.31 -51.93 -0.38 1.24 16 32 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.30 5.69 -51.93 -0.30 1.00 16 39 H 0.04 1.04 7.63 -51.93 -0.40 0.64 16 40 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.05 0.96 6.00 -51.93 -0.31 0.65 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 321.05 15.07 4.84 4.84 Total: -1.00 -28.30 321.05 -8.42 -36.73 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -6.53 Total: 3.74 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.58 Total: -0.93 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.21 Total: -49.63 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.30 -8.42 -36.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665692045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.020 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds